Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_06g0028290 | OGI:06083530 | 9/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr06:30669496-30671061 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TCAAAGTACAGGCAGCCTTCGTTCAATAGACATGAGTGGCTGCATGCAGTCAAaaacagcaatgtagctaactggattaggctggaagccgtcacacctcatctggtagaaatattccagaccagccttacccatcccattgaatgcgagacctgcgatcatagcagtccaagcgtgaacatctctcttgcccatacgttggaaaacaatggttgcctcattgaccctcccacatttcatgtacatgtccagcagtgcagtaccaatgtatatgtctgtttccaccagcctcagctcaatgcAagcatgtaatgccctgccctgtggtaatgcacctaagcttgcacaagcagatagAaggctcaccaccgtaaagttgtcaacacgcagatcatgtctcctcatattcatgaacaatagcaacgcctctctaagctggccgctgtggatgtacccagtgatcattgagttgaatgtgatgatatcacggacctccatttgatcaaacaGagaccgtgcaacatcaacatggccatgcttgcagtatccatcaattatagcattccatgactgaggtcttcGgcctctacccacagcatcaaaaacctctcgtgcatgaccaaagtcaccacacttcgcatacatgtcaatgagcgcaacgacaagattttcactcatcgacatccccttctccttaacaagcgagtgcagtgaacagcccAgctccAaatccttgagctgtgagcatgctgagagcacgccaATaacagtaacatcatccggtgcaatgccttcagaaagcatgttcttgaagcaatcaacagcctctttggcccgatcagcacgagaataggcagcaatcaaacttgtccacgagatcacatccctcactggagcctgagccagaaggagccgcgcatcagaaagcatgcccattttggccagcccactgatcaccattgtccaggAaaccgcgtccttcacaGggatctcgtcaaaagcccgtcgaacatcgccagcaagcccaagctcagtgtacatatGgatgagagaattcgcgacgaacggcgcggcagacggtagcatggtccgcaggcaggcggcgtgcagcatcgtgcacaggagggcgcgggggcgggaggaggaggagcacttgAaaaggaagtggaacgtgaacccgtctggtcggacggccgcgcggcgcatccggcggaagaggacgaaggggatgtccgggtctcccgacgaggtcccggcacggaagcaGgcgcggagggcGgtgtcgaagaggaaggtggaggcgggcattcggtcgaacaggtggagggcgtagcggaggtggaggggatcggatgggggcaggcagttgacgagggagttgaggaggtggtgggcggatggcGggtggaggaggcggccggaggtggtgaGgtgggcgtggagctcggcggcttgccggacGgtgcgcggcgtcggccatGgcaccggcggcatgtcgcggccactccgcgggctctgcgtgcgctcgcgcttgtgacgctctgttacgccgcttggacggcccat
More
|
||||||||||
| CDS seq | atgccgccggtgcCatggccgacgccgcgcacCgtccggcaagccgccgagctccacgcccacCtcaccacctccggccgcctcctccaccCgccatccgcccaccacctcctcaactccctcgtcaactgcctgcccccatccgatcccctccacctccgctacgccctccacctgttcgaccgaatgcccgcctccaccttcctcttcgacacCgccctccgcgcCtgcttccgtgccgggacctcgtcgggagacccggacatccccttcgtcctcttccgccggatgcgccgcgcggccgtccgaccagacgggttcacgttccacttcctttTcaagtgctcctcctcctcccgcccccgcgccctcctgtgcacgatgctgcacgccgcctgcctgcggaccatgctaccgtctgccgcgccgttcgtcgcgaattctctcatcCatatgtacactgagcttgggcttgctggcgatgttcgacgggcttttgacgagatccCtgtgaaggacgcggttTcctggacaatggtgatcagtgggctggccaaaatgggcatgctttctgatgcgcggctccttctggctcaggctccagtgagggatgtgatctcgtggacaagtttgattgctgcctattctcgtgctgatcgggccaaagaggctgttgattgcttcaagaacatgctttctgaaggcattgcaccggatgatgttactgttATtggcgtgctctcagcatgctcacagctcaaggattTggagcTgggctgttcactgcactcgcttgttaaggagaaggggatgtcgatgagtgaaaatcttgtcgttgcgctcattgacatgtatgcgaagtgtggtgactttggtcatgcacgagaggtttttgatgctgtgggtagaggcCgaagacctcagtcatggaatgctataattgatggatactgcaagcatggccatgttgatgttgcacggtctCtgtttgatcaaatggaggtccgtgatatcatcacattcaactcaatgatcactgggtacatccacagcggccagcttagagaggcgttgctattgttcatgaatatgaggagacatgatctgcgtgttgacaactttacggtggtgagcctTctatctgcttgtgcaagcttaggtgcattaccacagggcagggcattacatgctTgcattgagctgaggctggtggaaacagacatatacattggtactgcactgctggacatgtacatgaaatgtgggagggtcaatgaggcaaccattgttttccaacgtatgggcaagagagatgttcacgcttggactgctatgatcgcaggtctcgcattcaatgggatgggtaaggctggtctggaatatttctaccagatgaggtgtgacggcttccagcctaatccagttagctacattgctgtttTTGACTGCATGCAGCCACTCATGTCTATTGAACGAAGGCTGCCTGTACTTTGA
More
|
||||||||||
| Protein seq | MPPVPWPTPRTVRQAAELHAHLTTSGRLLHPPSAHHLLNSLVNCLPPSDPLHLRYALHLFDRMPASTFLFDTALRACFRAGTSSGDPDIPFVLFRRMRRAAVRPDGFTFHFLFKCSSSSRPRALLCTMLHAACLRTMLPSAAPFVANSLIHMYTELGLAGDVRRAFDEIPVKDAVSWTMVISGLAKMGMLSDARLLLAQAPVRDVISWTSLIAAYSRADRAKEAVDCFKNMLSEGIAPDDVTVIGVLSACSQLKDLELGCSLHSLVKEKGMSMSENLVVALIDMYAKCGDFGHAREVFDAVGRGRRPQSWNAIIDGYCKHGHVDVARSLFDQMEVRDIITFNSMITGYIHSGQLREALLLFMNMRRHDLRVDNFTVVSLLSACASLGALPQGRALHACIELRLVETDIYIGTALLDMYMKCGRVNEATIVFQRMGKRDVHAWTAMIAGLAFNGMGKAGLEYFYQMRCDGFQPNPVSYIAVFDCMQPLMSIERRLPVL |
||||||||||
| Function | Pentatricopeptide repeat-containing protein At2g22410, mitochondrial [UniProtKB/Swiss-Prot:Q9SJZ3] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_06g0028290 | OsNaBo_06g0028290.01 | Chr06 | 30669496 | 30671061 | - | NAM | ||
| CDS seq | atgccgccggtgcCatggccgacgccgcgcacCgtccggcaagccgccgagctccacgcccacCtcaccacctccggccgcctcctccaccCgccatccgcccaccacctcctcaactccctcgtcaactgcctgcccccatccgatcccctccacctccgctacgccctccacctgttcgaccgaatgcccgcctccaccttcctcttcgacacCgccctccgcgcCtgcttccgtgccgggacctcgtcgggagacccggacatccccttcgtcctcttccgccggatgcgccgcgcggccgtccgaccagacgggttcacgttccacttcctttTcaagtgctcctcctcctcccgcccccgcgccctcctgtgcacgatgctgcacgccgcctgcctgcggaccatgctaccgtctgccgcgccgttcgtcgcgaattctctcatcCatatgtacactgagcttgggcttgctggcgatgttcgacgggcttttgacgagatccCtgtgaaggacgcggttTcctggacaatggtgatcagtgggctggccaaaatgggcatgctttctgatgcgcggctccttctggctcaggctccagtgagggatgtgatctcgtggacaagtttgattgctgcctattctcgtgctgatcgggccaaagaggctgttgattgcttcaagaacatgctttctgaaggcattgcaccggatgatgttactgttATtggcgtgctctcagcatgctcacagctcaaggattTggagcTgggctgttcactgcactcgcttgttaaggagaaggggatgtcgatgagtgaaaatcttgtcgttgcgctcattgacatgtatgcgaagtgtggtgactttggtcatgcacgagaggtttttgatgctgtgggtagaggcCgaagacctcagtcatggaatgctataattgatggatactgcaagcatggccatgttgatgttgcacggtctCtgtttgatcaaatggaggtccgtgatatcatcacattcaactcaatgatcactgggtacatccacagcggccagcttagagaggcgttgctattgttcatgaatatgaggagacatgatctgcgtgttgacaactttacggtggtgagcctTctatctgcttgtgcaagcttaggtgcattaccacagggcagggcattacatgctTgcattgagctgaggctggtggaaacagacatatacattggtactgcactgctggacatgtacatgaaatgtgggagggtcaatgaggcaaccattgttttccaacgtatgggcaagagagatgttcacgcttggactgctatgatcgcaggtctcgcattcaatgggatgggtaaggctggtctggaatatttctaccagatgaggtgtgacggcttccagcctaatccagttagctacattgctgtttTTGACTGCATGCAGCCACTCATGTCTATTGAACGAAGGCTGCCTGTACTTTGA
More
|
|||||||
| Protein seq | MPPVPWPTPRTVRQAAELHAHLTTSGRLLHPPSAHHLLNSLVNCLPPSDPLHLRYALHLFDRMPASTFLFDTALRACFRAGTSSGDPDIPFVLFRRMRRAAVRPDGFTFHFLFKCSSSSRPRALLCTMLHAACLRTMLPSAAPFVANSLIHMYTELGLAGDVRRAFDEIPVKDAVSWTMVISGLAKMGMLSDARLLLAQAPVRDVISWTSLIAAYSRADRAKEAVDCFKNMLSEGIAPDDVTVIGVLSACSQLKDLELGCSLHSLVKEKGMSMSENLVVALIDMYAKCGDFGHAREVFDAVGRGRRPQSWNAIIDGYCKHGHVDVARSLFDQMEVRDIITFNSMITGYIHSGQLREALLLFMNMRRHDLRVDNFTVVSLLSACASLGALPQGRALHACIELRLVETDIYIGTALLDMYMKCGRVNEATIVFQRMGKRDVHAWTAMIAGLAFNGMGKAGLEYFYQMRCDGFQPNPVSYIAVFDCMQPLMSIERRLPVL
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 2.524298 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_06g0705350 | RBH | 0.312738 | 0.213813 | 0.509578 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g41040 | SBH | 0.124760 | 0.175425 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os06g0705350 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0028440 | RBH | 0.359876 | 2.383157 | 2.051016 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0028260 | SBH | 0.239439 | 0.231900 | 0.901249 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0028400 | RBH | 1.196730 | 3.488731 | 9.460806 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0027990 | SBH | 0.061658 | 0.289238 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0028480 | RBH | 4.237380 | 1.809937 | 11.559981 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0468500 | RBH | 0.7744795 | 2.1616825 | 1.230384 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0027850 | RBH | 0.340661 | 0.234173 | 0.692426 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0452100 | RBH | 0.346285 | 1.121978 | 1.8916995 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0028390 | RBH | 0.153788 | 0.185298 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0028440 | RBH | 0.972853 | 0.791662 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0028030 | RBH | 2.723677 | 6.419896 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0028690 | RBH | 0.203374 | 0.657310 | 2.168358 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0028310 | RBH | 0.121252 | 2.489928 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G028190 | RBH | 1.030676 | 1.154695 | 2.941664 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0003840 | SBH | 0.162812 | 1.354247 | 1.600036 |
