Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os06g41040 | OGI:06069470 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr06:24510255-24512549 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TCACCAATAATCTCCACAGGTGCAGTTTCCGTGTGTAAGTAGATGAAATCGATTTTTGTCCCTAAGGGATATCTCCCTTTCATAAACTTTTGAAACAAATTTGGCAAAATTATGGCAATCAACACATATGCGAAGATTCTTCATAACCCGGATAGTCAATCCTGGAGGAGTGTTCATCAATCCAAAAGTTATTGCCAGCTTCTCACTGTGACCAAGAAGCATGCGTTCTTTTTGCTCATCATCAACATCATGCAGCACACAACTCAAGTCTGGAACAAAGCCAGCTGCTTTGATATCGACAAATATCTCTTTTATCTTGGCATTTATGTCTTTCTTACTGGGATGGAACCGCTCACTTGAATGGAAGGTGTGAATAACCTTGTCAAGAATTATCCAGCTCTGCCCTGGTTCCTTGGTCACTGTCTTCTCCAACATTAGCTTCCTCACTTTGAAAACATCTTTCCACATCCCAGCAGCAGCATAAATGTTAGAAAGTATTACATAATTGCCAGCATTTTCTGGCTCCATTTCCAGAAGCTTCTGAGCAACAAGCTCACCAACATGAACGTTAGCATGGACTCTGCAAGCACCGAGCAGTGAACCCCAAATTGATGGAGTTGACTCAAATGGCATATTTTCTATCAAATTTAAAGCTTTCTCTAGTCGTCCAGAACGTCCAAGAAGATCAATAATGCATCCATAGTGTCCAGTGTGGAGAAGTGCACTTTGCTCTTTGACCACAGTATCAAATATATCAAGGCCCTCATCAACCAGCCCACCATGGCTACAACCAGATAAAACAGCCAACAAAGTCACACTGTCAGGCTTCACCTCTTTATGCAAATCTTTGAAGAGACTAATAACTTCATGCCCCAATCCATGCCTTCCATATCCCATAAGCATTGCATTCCAACTGACGACTGATCTCTCTAGCATGTTGTCAAATACTCTCCTTGAGTATAACAGTTTACCACATTTGGAGTACATATCGATCAAAGAATTCTGTAGAGCAACGAAGAAAGGCAATTCTTTACGAAGTATTAAGGCATGGACTTGTTTGCCATAATCCAAAGAAGCCAGGCCAGACAATGCAGTAACAAGGGTGGTGAAGGTAACATGATTGCATTGCATTCCCTCACTATACAATTGTCTGAACAAGTCCAAGGCTTCCTCATCAAGACCCTTTTGAGCATAGCCAGATATAATTGCAGTACACGAAACGACGTCCCTTTCTGGAAGCGTGTCAAATACTCTTCGAGCTTCTTGGATGTTTTCTGACTTGGCATACATGTCAAGCAGGGAACTCCCAACAAACATGTGTGACTCAAAATTTGTCTTGACTAAGAGAGAATGGACTTGCTTGCCCTGGTATATACTTTGAGGACCAGAACAGGATGTAAGAACAGTTGCTAAAGTGTATTCATTAGGGATGCATCCTGCCAGATAGAAGTAAAATGTATTACACATTTGACAGAAATTAATACAGCATATGTTGATATAATCTGATCCTTGAAGACAATGGCATGCATTCCCAAATGGTTAAGAATATTTATAACAGTAATTGCAAAACAAACCTCCAAACTGGAGAGATTGAATATCAACTTGAGAGGACATTAAGACGGTCAGGGAGATATGAAAAGTAATTGTTGTGGCAATATTCTAAATATGGCCATGACATAACTCCATCCATATTCTTTACAGTACCAAAAATTTTATAAACTTTACTTTATAATAATCATGCCCCGCATGAAAGGTAAACCCCGCATTATGGATGCCAAATAATGTATCTAACAAAGGTAGATTATAGAGTACCAGACAACATGCTATGAAAACTCTGTTTTTGTTTTTCTGTCAATCTAAATCATTCAGCCAAAATGCATTGCAGAAAATAAATTGCCATCTCTAATCTGATGCTACTTTCTGATCTGTGTGATCTCCTTATGTCAAATGACTCACGAGAAACGATCCAAACAATTTACCAGCTCTAAGCATCTTGATGAACAGATCCAAGGCCTCGACATGTCGTTCTGTTTGAGAATAGCCTGAAATCATCGTCGTCCACGAGACCACACTCCGCTCCGGCATTCTATCGAGCACGTTGCGCGCGTCGTCCAGCGCGCCGCACCGCACGTACATGGTAACCAGCCGGGTCCCCAGGAACACCGCAGGCCGGTACCTCGCCGTGATCATGCGCGCGTGCACCTGCCGCCCCTCCCAGAGCGCCCTCCTCTCGATGCACGCCGTGATGGCGGCTTCGTACTCGTGGAACCTCGCGCTGGCCCCCGGAAGCGCCAT
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| CDS seq | ATGGCGCTTCCGGGGGCCAGCGCGAGGTTCCACGAGTACGAAGCCGCCATCACGGCGTGCATCGAGAGGAGGGCGCTCTGGGAGGGGCGGCAGGTGCACGCGCGCATGATCACGGCGAGGTACCGGCCTGCGGTGTTCCTGGGGACCCGGCTGGTTACCATGTACGTGCGGTGCGGCGCGCTGGACGACGCGCGCAACGTGCTCGATAGAATGCCGGAGCGGAGTGTGGTCTCGTGGACGACGATGATTTCAGGCTATTCTCAAACAGAACGACATGTCGAGGCCTTGGATCTGTTCATCAAGATGCTTAGAGCTGGATGCATCCCTAATGAATACACTTTAGCAACTGTTCTTACATCCTGTTCTGGTCCTCAAAGTATATACCAGGGCAAGCAAGTCCATTCTCTCTTAGTCAAGACAAATTTTGAGTCACACATGTTTGTTGGGAGTTCCCTGCTTGACATGTATGCCAAGTCAGAAAACATCCAAGAAGCTCGAAGAGTATTTGACACGCTTCCAGAAAGGGACGTCGTTTCGTGTACTGCAATTATATCTGGCTATGCTCAAAAGGGTCTTGATGAGGAAGCCTTGGACTTGTTCAGACAATTGTATAGTGAGGGAATGCAATGCAATCATGTTACCTTCACCACCCTTGTTACTGCATTGTCTGGCCTGGCTTCTTTGGATTATGGCAAACAAGTCCATGCCTTAATACTTCGTAAAGAATTGCCTTTCTTCGTTGCTCTACAGAATTCTTTGATCGATATGTACTCCAAATGTGGTAAACTGTTATACTCAAGGAGAGTATTTGACAACATGCTAGAGAGATCAGTCGTCAGTTGGAATGCAATGCTTATGGGATATGGAAGGCATGGATTGGGGCATGAAGTTATTAGTCTCTTCAAAGATTTGCATAAAGAGGTGAAGCCTGACAGTGTGACTTTGTTGGCTGTTTTATCTGGTTGTAGCCATGGTGGGCTGGTTGATGAGGGCCTTGATATATTTGATACTGTGGTCAAAGAGCAAAGTGCACTTCTCCACACTGGACACTATGGATGCATTATTGATCTTCTTGGACGTTCTGGACGACTAGAGAAAGCTTTAAATTTGATAGAAAATATGCCATTTGAGTCAACTCCATCAATTTGGGGTTCACTGCTCGGTGCTTGCAGAGTCCATGCTAACGTTCATGTTGGTGAGCTTGTTGCTCAGAAGCTTCTGGAAATGGAGCCAGAAAATGCTGGCAATTATGTAATACTTTCTAACATTTATGCTGCTGCTGGGATGTGGAAAGATGTTTTCAAAGTGAGGAAGCTAATGTTGGAGAAGACAGTGACCAAGGAACCAGGGCAGAGCTGGATAATTCTTGACAAGGTTATTCACACCTTCCATTCAAGTGAGCGGTTCCATCCCAGTAAGAAAGACATAAATGCCAAGATAAAAGAGATATTTGTCGATATCAAAGCAGCTGGCTTTGTTCCAGACTTGAGTTGTGTGCTGCATGATGTTGATGATGAGCAAAAAGAACGCATGCTTCTTGGTCACAGTGAGAAGCTGGCAATAACTTTTGGATTGATGAACACTCCTCCAGGATTGACTATCCGGGTTATGAAGAATCTTCGCATATGTGTTGATTGCCATAATTTTGCCAAATTTGTTTCAAAAGTTTATGAAAGGGAGATATCCCTTAGGGACAAAAATCGATTTCATCTACTTACACACGGAAACTGCACCTGTGGAGATTATTGGTGA
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| Protein seq | MALPGASARFHEYEAAITACIERRALWEGRQVHARMITARYRPAVFLGTRLVTMYVRCGALDDARNVLDRMPERSVVSWTTMISGYSQTERHVEALDLFIKMLRAGCIPNEYTLATVLTSCSGPQSIYQGKQVHSLLVKTNFESHMFVGSSLLDMYAKSENIQEARRVFDTLPERDVVSCTAIISGYAQKGLDEEALDLFRQLYSEGMQCNHVTFTTLVTALSGLASLDYGKQVHALILRKELPFFVALQNSLIDMYSKCGKLLYSRRVFDNMLERSVVSWNAMLMGYGRHGLGHEVISLFKDLHKEVKPDSVTLLAVLSGCSHGGLVDEGLDIFDTVVKEQSALLHTGHYGCIIDLLGRSGRLEKALNLIENMPFESTPSIWGSLLGACRVHANVHVGELVAQKLLEMEPENAGNYVILSNIYAAAGMWKDVFKVRKLMLEKTVTKEPGQSWIILDKVIHTFHSSERFHPSKKDINAKIKEIFVDIKAAGFVPDLSCVLHDVDDEQKERMLLGHSEKLAITFGLMNTPPGLTIRVMKNLRICVDCHNFAKFVSKVYEREISLRDKNRFHLLTHGNCTCGDYW |
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| Function | Putative pentatricopeptide repeat-containing protein At3g13770, mitochondrial [UniProtKB/Swiss-Prot:Q9LIC3] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os06g41040 | LOC_Os06g41040.1 | Chr06 | 24510255 | 24512549 | - | MSU_osa1r7 | ||
| CDS seq | ATGGCGCTTCCGGGGGCCAGCGCGAGGTTCCACGAGTACGAAGCCGCCATCACGGCGTGCATCGAGAGGAGGGCGCTCTGGGAGGGGCGGCAGGTGCACGCGCGCATGATCACGGCGAGGTACCGGCCTGCGGTGTTCCTGGGGACCCGGCTGGTTACCATGTACGTGCGGTGCGGCGCGCTGGACGACGCGCGCAACGTGCTCGATAGAATGCCGGAGCGGAGTGTGGTCTCGTGGACGACGATGATTTCAGGCTATTCTCAAACAGAACGACATGTCGAGGCCTTGGATCTGTTCATCAAGATGCTTAGAGCTGGATGCATCCCTAATGAATACACTTTAGCAACTGTTCTTACATCCTGTTCTGGTCCTCAAAGTATATACCAGGGCAAGCAAGTCCATTCTCTCTTAGTCAAGACAAATTTTGAGTCACACATGTTTGTTGGGAGTTCCCTGCTTGACATGTATGCCAAGTCAGAAAACATCCAAGAAGCTCGAAGAGTATTTGACACGCTTCCAGAAAGGGACGTCGTTTCGTGTACTGCAATTATATCTGGCTATGCTCAAAAGGGTCTTGATGAGGAAGCCTTGGACTTGTTCAGACAATTGTATAGTGAGGGAATGCAATGCAATCATGTTACCTTCACCACCCTTGTTACTGCATTGTCTGGCCTGGCTTCTTTGGATTATGGCAAACAAGTCCATGCCTTAATACTTCGTAAAGAATTGCCTTTCTTCGTTGCTCTACAGAATTCTTTGATCGATATGTACTCCAAATGTGGTAAACTGTTATACTCAAGGAGAGTATTTGACAACATGCTAGAGAGATCAGTCGTCAGTTGGAATGCAATGCTTATGGGATATGGAAGGCATGGATTGGGGCATGAAGTTATTAGTCTCTTCAAAGATTTGCATAAAGAGGTGAAGCCTGACAGTGTGACTTTGTTGGCTGTTTTATCTGGTTGTAGCCATGGTGGGCTGGTTGATGAGGGCCTTGATATATTTGATACTGTGGTCAAAGAGCAAAGTGCACTTCTCCACACTGGACACTATGGATGCATTATTGATCTTCTTGGACGTTCTGGACGACTAGAGAAAGCTTTAAATTTGATAGAAAATATGCCATTTGAGTCAACTCCATCAATTTGGGGTTCACTGCTCGGTGCTTGCAGAGTCCATGCTAACGTTCATGTTGGTGAGCTTGTTGCTCAGAAGCTTCTGGAAATGGAGCCAGAAAATGCTGGCAATTATGTAATACTTTCTAACATTTATGCTGCTGCTGGGATGTGGAAAGATGTTTTCAAAGTGAGGAAGCTAATGTTGGAGAAGACAGTGACCAAGGAACCAGGGCAGAGCTGGATAATTCTTGACAAGGTTATTCACACCTTCCATTCAAGTGAGCGGTTCCATCCCAGTAAGAAAGACATAAATGCCAAGATAAAAGAGATATTTGTCGATATCAAAGCAGCTGGCTTTGTTCCAGACTTGAGTTGTGTGCTGCATGATGTTGATGATGAGCAAAAAGAACGCATGCTTCTTGGTCACAGTGAGAAGCTGGCAATAACTTTTGGATTGATGAACACTCCTCCAGGATTGACTATCCGGGTTATGAAGAATCTTCGCATATGTGTTGATTGCCATAATTTTGCCAAATTTGTTTCAAAAGTTTATGAAAGGGAGATATCCCTTAGGGACAAAAATCGATTTCATCTACTTACACACGGAAACTGCACCTGTGGAGATTATTGGTGA
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| Protein seq | MALPGASARFHEYEAAITACIERRALWEGRQVHARMITARYRPAVFLGTRLVTMYVRCGALDDARNVLDRMPERSVVSWTTMISGYSQTERHVEALDLFIKMLRAGCIPNEYTLATVLTSCSGPQSIYQGKQVHSLLVKTNFESHMFVGSSLLDMYAKSENIQEARRVFDTLPERDVVSCTAIISGYAQKGLDEEALDLFRQLYSEGMQCNHVTFTTLVTALSGLASLDYGKQVHALILRKELPFFVALQNSLIDMYSKCGKLLYSRRVFDNMLERSVVSWNAMLMGYGRHGLGHEVISLFKDLHKEVKPDSVTLLAVLSGCSHGGLVDEGLDIFDTVVKEQSALLHTGHYGCIIDLLGRSGRLEKALNLIENMPFESTPSIWGSLLGACRVHANVHVGELVAQKLLEMEPENAGNYVILSNIYAAAGMWKDVFKVRKLMLEKTVTKEPGQSWIILDKVIHTFHSSERFHPSKKDINAKIKEIFVDIKAAGFVPDLSCVLHDVDDEQKERMLLGHSEKLAITFGLMNTPPGLTIRVMKNLRICVDCHNFAKFVSKVYEREISLRDKNRFHLLTHGNCTCGDYW
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.124760 | 0.175425 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_06g0681900 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | Os06g0681900 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0022310 | RBH | 0.0 | 0.0 | 0.398872 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0022160 | RBH | 0.0 | 0.625712 | 0.596820 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0022260 | RBH | 0.264872 | 0.0 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0021980 | RBH | 0.0 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0022390 | RBH | 0.000000 | 0.0 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0385700 | RBH | 7.732355 | 9.3066865 | 7.126475 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0021840 | RBH | 0.041651 | 0.171933 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0365800 | RBH | 1.0107895 | 1.918166 | 4.932718 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0022300 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0022220 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0021910 | RBH | 0.000000 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0022580 | RBH | 0.0 | 0.000000 | 0.144786 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0022170 | RBH | 0.000000 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G021940 | RBH | 0.295818 | 0.559388 | 0.728008 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0022140 | RBH | 0.298898 | 2.197661 | 0.740486 |
