Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsZS97_06G0452100 | OGI:06083530 | 9/16 | Zhenshan 97 | ZS97RS3 | HZAU | Chr06:30837064-30839569 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | CTACCAACCCTGAGGATTGAACTGAGAGCAGCACTGCTGTGAAGCTTTCAGTGACACAGGCACACAGCCGACCTCTTTTTCCTGAAAACGCATATTACTGGTAACAGAGTATCAACATGACAACCAGAGTGTAATTAAGGAGAAGAAAGAGTACCTTTGTTGATCAGAAATTCAAGTGCAATTCCAAACTAATGCGAACAACTCCAGTTTACAATGTTCCTAAACCTCAGCTTTTTCACCAAAAACATGGAGTACTATAAAATGGTATTTACCAAAAATCGTTGCAAGAACATGCCCCCTCTCTGAAGTGGTGGAACCTACTCCGGTCTCTGACTATGATTTCCCGATTCCAAAGCCTGGAGATCAACTTGATTGCAGAGTGGCAGTCCTCACATACCCTGAGATTCTTTATGATATGAACCGGCAAGTTTGGTGCTAGACTAACGAGGCCAAAAGCAATGGCTAGCTTCTCACTGTGTGCTAGCAGTGTCTGTTCTTTCTCTTCCTCATCGACATCCACTGTTACCTGTGATGTAATCGGCGAATAGCCTGCTGACTTTAACCTGTGTGAGATCTCCTCTAGCATTGCGATGATCTCCAATATCCGTGGATGTGATTTGTCACTAACTACAAACTTGTGCACCTGCCCAGCCACAGTAACAGAACTATAACCTGCAGTTTTCTTAACTTGCCTTTCTTCCATCAACATCCTTATCTTTGACGCATCTTCCCATTTTCTAGAGTCTATGCATATGTTATATAACTGGACATAGACAGCATCCTCGTCAGGTTCTATCTTCAGAAGATGCTCAGCGGCACATTGAGCTAAGTCTATGCGTTTATGGACTCTGCAAGCACTCAAGATGGATGCCCATATGACAGAATTCGGTTGCATGGGCATGGTCTTAACAAGATCCATTGCTTCATCCAAAAGCCCACTGCGTCCCAGCAAATCAATCATGCAGCCATAGTGCTCAATCTGAGGATGTATGTTGTACAAGATTCTCATCTCATCAAAGTACAGGCGGCCTTCGTTCAATAGACATGAGTGGCTGCATGCAGTCAAAACAGCAATGTAGCTAACTGGATTAGGCTGGAAGCCGTCACACCTCATCTGGTAGAAATATTCCAGACCAGCCTTACCCATCCCATTGAATGCGAGACCTGCGATCATAGCAGTCCAAGCGTGAACATCTCTCTTGCCCATACGTTGGAAAACAATGGTTGCCTCATTGACCCTCCCACATTTCATGTACATGTCCAGCAGTGCAGTACCAATGTATATGTCTGTTTCCACCAGCCTCAGCTCAATGCAAGCATGTAATGCCCTGCCCTGTGGTAATGCACCTAAGCTTGCACAAGCAGATAGAAGGCTCACCACCGTAAAGTTGTCAACACGCAGATCATGTCTCCTCATATTCATGAACAATAGCAACGCCTCTCTAAGCTGGCCGCTGTGGATGTACCCAGTGATCATTGAGTTGAATGTGATGATATCACGGACCTCCATTTGATCAAACAGAGACCGTGCAACATCAACATGGCCATGCTTGCAGTATCCATCAATTATAGCATTCCATGACTGAGGTCTTCGGCCTCTACCCACAGCATCAAAAACCTCTCGTGCATGACCAAAGTCACCACACTTCGCATACATGTCAATGAGCGCAACGACAAGATTTTCACTCATCGACATCCCCTTCTCCTTAACAAGCGAGTGCAGTGAACAGCCCAGCTCCAAATCCTTGAGCTGTGAGCATGCTGAGAGCACGCCAATAACAGTAACATCATCCGGTGCAATGCCTTCAGAAAGCATGTTCTTGAAGCAATCAACAGCCTCTTTGGCCCGATCAGCACGAGAATAGGCAGCAATCAAACTTGTCCACGAGATCACATCCCTCACTGGAGCCTGAGCCAGAAGGAGCCGCGCATCAGAAAGCATGCCCATTTTGGCCAGCCCACTGATCACCATTGTCCAGGAAACCGCGTCCTTCACAGGGATCTCGTCAAAAGCCCGTCGAACATCGCCAGCAAGCCCAAGCTCAGTGTACATATGGATGAGAGAATTCGCGACGAACGGCGCGGCAGACGGTAGCATGGTCCGCAGGCAGGCGGCGTGCAGCATCGTGCACAGGAGGGCGCGGGGGCGGGAGGAGGAGGAGCACTTGAAAAGGAAGTGGAACGTGAACCCGTCTGGTCGGACGGCCGCGCGGCGCATCCGGCGGAAGAGGACGAAGGGGATGTCCGGGTCTCCCGACGAGGTCCCGGCACGGAAGCAGGCGCGGAGGGCGGTGTCGAAGAGGAAGGTGGAGGCGGGCATTCGGTCGAACAGGTGGAGGGCGTAGCGGAGGTGGAGGGGATCGGATGGGGGCAGGCAGTTGACGAGGGAGTTGAGGAGGTGGTGGGCGGATGGCGGGTGGAGGAGGCGGCCGGAGGTGGTGAGGTGGGCGTGGAGCTCGGCGGCTTGCCGGACGGTGCGCGGCGTCGGCCATGGCACCGGCGGCAT
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| CDS seq | ATGCCGCCGGTGCCATGGCCGACGCCGCGCACCGTCCGGCAAGCCGCCGAGCTCCACGCCCACCTCACCACCTCCGGCCGCCTCCTCCACCCGCCATCCGCCCACCACCTCCTCAACTCCCTCGTCAACTGCCTGCCCCCATCCGATCCCCTCCACCTCCGCTACGCCCTCCACCTGTTCGACCGAATGCCCGCCTCCACCTTCCTCTTCGACACCGCCCTCCGCGCCTGCTTCCGTGCCGGGACCTCGTCGGGAGACCCGGACATCCCCTTCGTCCTCTTCCGCCGGATGCGCCGCGCGGCCGTCCGACCAGACGGGTTCACGTTCCACTTCCTTTTCAAGTGCTCCTCCTCCTCCCGCCCCCGCGCCCTCCTGTGCACGATGCTGCACGCCGCCTGCCTGCGGACCATGCTACCGTCTGCCGCGCCGTTCGTCGCGAATTCTCTCATCCATATGTACACTGAGCTTGGGCTTGCTGGCGATGTTCGACGGGCTTTTGACGAGATCCCTGTGAAGGACGCGGTTTCCTGGACAATGGTGATCAGTGGGCTGGCCAAAATGGGCATGCTTTCTGATGCGCGGCTCCTTCTGGCTCAGGCTCCAGTGAGGGATGTGATCTCGTGGACAAGTTTGATTGCTGCCTATTCTCGTGCTGATCGGGCCAAAGAGGCTGTTGATTGCTTCAAGAACATGCTTTCTGAAGGCATTGCACCGGATGATGTTACTGTTATTGGCGTGCTCTCAGCATGCTCACAGCTCAAGGATTTGGAGCTGGGCTGTTCACTGCACTCGCTTGTTAAGGAGAAGGGGATGTCGATGAGTGAAAATCTTGTCGTTGCGCTCATTGACATGTATGCGAAGTGTGGTGACTTTGGTCATGCACGAGAGGTTTTTGATGCTGTGGGTAGAGGCCGAAGACCTCAGTCATGGAATGCTATAATTGATGGATACTGCAAGCATGGCCATGTTGATGTTGCACGGTCTCTGTTTGATCAAATGGAGGTCCGTGATATCATCACATTCAACTCAATGATCACTGGGTACATCCACAGCGGCCAGCTTAGAGAGGCGTTGCTATTGTTCATGAATATGAGGAGACATGATCTGCGTGTTGACAACTTTACGGTGGTGAGCCTTCTATCTGCTTGTGCAAGCTTAGGTGCATTACCACAGGGCAGGGCATTACATGCTTGCATTGAGCTGAGGCTGGTGGAAACAGACATATACATTGGTACTGCACTGCTGGACATGTACATGAAATGTGGGAGGGTCAATGAGGCAACCATTGTTTTCCAACGTATGGGCAAGAGAGATGTTCACGCTTGGACTGCTATGATCGCAGGTCTCGCATTCAATGGGATGGGTAAGGCTGGTCTGGAATATTTCTACCAGATGAGGTGTGACGGCTTCCAGCCTAATCCAGTTAGCTACATTGCTGTTTTGACTGCATGCAGCCACTCATGTCTATTGAACGAAGGCCGCCTGTACTTTGATGAGATGAGAATCTTGTACAACATACATCCTCAGATTGAGCACTATGGCTGCATGATTGATTTGCTGGGACGCAGTGGGCTTTTGGATGAAGCAATGGATCTTGTTAAGACCATGCCCATGCAACCGAATTCTGTCATATGGGCATCCATCTTGAGTGCTTGCAGAGTCCATAAACGCATAGACTTAGCTCAATGTGCCGCTGAGCATCTTCTGAAGATAGAACCTGACGAGGATGCTGTCTATGTCCAGTTATATAACATATGCATAGACTCTAGAAAATGGGAAGATGCGTCAAAGATAAGGATGTTGATGGAAGAAAGGCAAGTTAAGAAAACTGCAGGTTATAGTTCTGTTACTGTGGCTGGGCAGGTGCACAAGTTTGTAGTTAGTGACAAATCACATCCACGGATATTGGAGATCATCGCAATGCTAGAGGAGATCTCACACAGGTTAAAGTCAGCAGGCTATTCGCCGATTACATCACAGGTAACAGTGGATGTCGATGAGGAAGAGAAAGAACAGACACTGCTAGCACACAGTGAGAAGCTAGCCATTGCTTTTGGCCTCGTTAGTCTAGCACCAAACTTGCCGGTTCATATCATAAAGAATCTCAGGGAAAAAGAGGTCGGCTGTGTGCCTGTGTCACTGAAAGCTTCACAGCAGTGCTGCTCTCAGTTCAATCCTCAGGGTTGGTAG
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| Protein seq | MPPVPWPTPRTVRQAAELHAHLTTSGRLLHPPSAHHLLNSLVNCLPPSDPLHLRYALHLFDRMPASTFLFDTALRACFRAGTSSGDPDIPFVLFRRMRRAAVRPDGFTFHFLFKCSSSSRPRALLCTMLHAACLRTMLPSAAPFVANSLIHMYTELGLAGDVRRAFDEIPVKDAVSWTMVISGLAKMGMLSDARLLLAQAPVRDVISWTSLIAAYSRADRAKEAVDCFKNMLSEGIAPDDVTVIGVLSACSQLKDLELGCSLHSLVKEKGMSMSENLVVALIDMYAKCGDFGHAREVFDAVGRGRRPQSWNAIIDGYCKHGHVDVARSLFDQMEVRDIITFNSMITGYIHSGQLREALLLFMNMRRHDLRVDNFTVVSLLSACASLGALPQGRALHACIELRLVETDIYIGTALLDMYMKCGRVNEATIVFQRMGKRDVHAWTAMIAGLAFNGMGKAGLEYFYQMRCDGFQPNPVSYIAVLTACSHSCLLNEGRLYFDEMRILYNIHPQIEHYGCMIDLLGRSGLLDEAMDLVKTMPMQPNSVIWASILSACRVHKRIDLAQCAAEHLLKIEPDEDAVYVQLYNICIDSRKWEDASKIRMLMEERQVKKTAGYSSVTVAGQVHKFVVSDKSHPRILEIIAMLEEISHRLKSAGYSPITSQVTVDVDEEEKEQTLLAHSEKLAIAFGLVSLAPNLPVHIIKNLREKEVGCVPVSLKASQQCCSQFNPQGW |
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| Function | Pentatricopeptide repeat-containing protein At1g08070, chloroplastic [UniProtKB/Swiss-Prot:Q9LN01] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsZS97_06G0452100 | OsZS97_06T0452100.1 | Chr06 | 30837064 | 30839569 | - | makerRMon | ||
| CDS seq | ATGCCGCCGGTGCCATGGCCGACGCCGCGCACCGTCCGGCAAGCCGCCGAGCTCCACGCCCACCTCACCACCTCCGGCCGCCTCCTCCACCCGCCATCCGCCCACCACCTCCTCAACTCCCTCGTCAACTGCCTGCCCCCATCCGATCCCCTCCACCTCCGCTACGCCCTCCACCTGTTCGACCGAATGCCCGCCTCCACCTTCCTCTTCGACACCGCCCTCCGCGCCTGCTTCCGTGCCGGGACCTCGTCGGGAGACCCGGACATCCCCTTCGTCCTCTTCCGCCGGATGCGCCGCGCGGCCGTCCGACCAGACGGGTTCACGTTCCACTTCCTTTTCAAGTGCTCCTCCTCCTCCCGCCCCCGCGCCCTCCTGTGCACGATGCTGCACGCCGCCTGCCTGCGGACCATGCTACCGTCTGCCGCGCCGTTCGTCGCGAATTCTCTCATCCATATGTACACTGAGCTTGGGCTTGCTGGCGATGTTCGACGGGCTTTTGACGAGATCCCTGTGAAGGACGCGGTTTCCTGGACAATGGTGATCAGTGGGCTGGCCAAAATGGGCATGCTTTCTGATGCGCGGCTCCTTCTGGCTCAGGCTCCAGTGAGGGATGTGATCTCGTGGACAAGTTTGATTGCTGCCTATTCTCGTGCTGATCGGGCCAAAGAGGCTGTTGATTGCTTCAAGAACATGCTTTCTGAAGGCATTGCACCGGATGATGTTACTGTTATTGGCGTGCTCTCAGCATGCTCACAGCTCAAGGATTTGGAGCTGGGCTGTTCACTGCACTCGCTTGTTAAGGAGAAGGGGATGTCGATGAGTGAAAATCTTGTCGTTGCGCTCATTGACATGTATGCGAAGTGTGGTGACTTTGGTCATGCACGAGAGGTTTTTGATGCTGTGGGTAGAGGCCGAAGACCTCAGTCATGGAATGCTATAATTGATGGATACTGCAAGCATGGCCATGTTGATGTTGCACGGTCTCTGTTTGATCAAATGGAGGTCCGTGATATCATCACATTCAACTCAATGATCACTGGGTACATCCACAGCGGCCAGCTTAGAGAGGCGTTGCTATTGTTCATGAATATGAGGAGACATGATCTGCGTGTTGACAACTTTACGGTGGTGAGCCTTCTATCTGCTTGTGCAAGCTTAGGTGCATTACCACAGGGCAGGGCATTACATGCTTGCATTGAGCTGAGGCTGGTGGAAACAGACATATACATTGGTACTGCACTGCTGGACATGTACATGAAATGTGGGAGGGTCAATGAGGCAACCATTGTTTTCCAACGTATGGGCAAGAGAGATGTTCACGCTTGGACTGCTATGATCGCAGGTCTCGCATTCAATGGGATGGGTAAGGCTGGTCTGGAATATTTCTACCAGATGAGGTGTGACGGCTTCCAGCCTAATCCAGTTAGCTACATTGCTGTTTTGACTGCATGCAGCCACTCATGTCTATTGAACGAAGGCCGCCTGTACTTTGATGAGATGAGAATCTTGTACAACATACATCCTCAGATTGAGCACTATGGCTGCATGATTGATTTGCTGGGACGCAGTGGGCTTTTGGATGAAGCAATGGATCTTGTTAAGACCATGCCCATGCAACCGAATTCTGTCATATGGGCATCCATCTTGAGTGCTTGCAGAGTCCATAAACGCATAGACTTAGCTCAATGTGCCGCTGAGCATCTTCTGAAGATAGAACCTGACGAGGATGCTGTCTATGTCCAGTTATATAACATATGCATAGACTCTAGAAAATGGGAAGATGCGTCAAAGATAAGGATGTTGATGGAAGAAAGGCAAGTTAAGAAAACTGCAGGTTATAGTTCTGTTACTGTGGCTGGGCAGGTGCACAAGTTTGTAGTTAGTGACAAATCACATCCACGGATATTGGAGATCATCGCAATGCTAGAGGAGATCTCACACAGGTTAAAGTCAGCAGGCTATTCGCCGATTACATCACAGGTAACAGTGGATGTCGATGAGGAAGAGAAAGAACAGACACTGCTAGCACACAGTGAGAAGCTAGCCATTGCTTTTGGCCTCGTTAGTCTAGCACCAAACTTGCCGGTTCATATCATAAAGAATCTCAGGGAAAAAGAGGTCGGCTGTGTGCCTGTGTCACTGAAAGCTTCACAGCAGTGCTGCTCTCAGTTCAATCCTCAGGGTTGGTAG
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| Protein seq | MPPVPWPTPRTVRQAAELHAHLTTSGRLLHPPSAHHLLNSLVNCLPPSDPLHLRYALHLFDRMPASTFLFDTALRACFRAGTSSGDPDIPFVLFRRMRRAAVRPDGFTFHFLFKCSSSSRPRALLCTMLHAACLRTMLPSAAPFVANSLIHMYTELGLAGDVRRAFDEIPVKDAVSWTMVISGLAKMGMLSDARLLLAQAPVRDVISWTSLIAAYSRADRAKEAVDCFKNMLSEGIAPDDVTVIGVLSACSQLKDLELGCSLHSLVKEKGMSMSENLVVALIDMYAKCGDFGHAREVFDAVGRGRRPQSWNAIIDGYCKHGHVDVARSLFDQMEVRDIITFNSMITGYIHSGQLREALLLFMNMRRHDLRVDNFTVVSLLSACASLGALPQGRALHACIELRLVETDIYIGTALLDMYMKCGRVNEATIVFQRMGKRDVHAWTAMIAGLAFNGMGKAGLEYFYQMRCDGFQPNPVSYIAVLTACSHSCLLNEGRLYFDEMRILYNIHPQIEHYGCMIDLLGRSGLLDEAMDLVKTMPMQPNSVIWASILSACRVHKRIDLAQCAAEHLLKIEPDEDAVYVQLYNICIDSRKWEDASKIRMLMEERQVKKTAGYSSVTVAGQVHKFVVSDKSHPRILEIIAMLEEISHRLKSAGYSPITSQVTVDVDEEEKEQTLLAHSEKLAIAFGLVSLAPNLPVHIIKNLREKEVGCVPVSLKASQQCCSQFNPQGW
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.346285 | 1.121978 | 1.8916995 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_06g0705350 | RBH | 0.312738 | 0.213813 | 0.509578 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g46840 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os06g0705350 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0028440 | SBH | 0.359876 | 2.383157 | 2.051016 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0028260 | SBH | 0.239439 | 0.231900 | 0.901249 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0028400 | SBH | 1.196730 | 3.488731 | 9.460806 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0027990 | SBH | 0.061658 | 0.289238 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0028480 | SBH | 4.237380 | 1.809937 | 11.559981 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0468500 | SBH | 0.7744795 | 2.1616825 | 1.230384 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0027850 | SBH | 0.340661 | 0.234173 | 0.692426 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0452000 | RBH | 0.860369 | 2.9803035 | 2.7255425 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0028390 | SBH | 0.153788 | 0.185298 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0028440 | SBH | 0.972853 | 0.791662 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0028030 | SBH | 2.723677 | 6.419896 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0028690 | SBH | 0.203374 | 0.657310 | 2.168358 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0028310 | SBH | 0.121252 | 2.489928 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G028190 | SBH | 1.030676 | 1.154695 | 2.941664 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0028290 | RBH | 0.0 | 2.524298 | 0.0 |
