Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_02g0026600 | OGI:02076190 | 15/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr02:27969311-27971056 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atggaaccttctgctagcgtgtggggagctttgctctctgcatgtgctatgcataataacgtcgatgttggagagattgcagcatttaggctatttgagttagaagaaggcagtgctagcaattatgttaccctctgtggaatttatgacgcagttggtcaatctgatggtgttgcagggttgagatcaaggatgagagaactcggcatggtgaagacgcctgggtgcagtcggatcgatgtgaagggaagagctcatgctttctaccaggggagcatcccacgttatttgaggggatgaatgctttgggtattagatcagttactagacgatatggcaaattcagattctgaagatgagcttgctgacttgtactttgagttaactctgcactgaagttctgatggtgaaagtcatgtattgctgcaatcaattttgttcaaggaaaagcatggatcttccttgatggctgccatgccactcatgaacaaatttgaatgaagaccaacaaataatcctaagaaattggtcaatctagatgccttggaagctgaaacttttcaggaccagtatctggagcaacatcctgcatcatggtatggtgccaggatgagagcaatagggtggctcttctggtccaaacgactggtatctagtctgaggtgactgcaatgacagtaatacatgtgtaatgttgtcagtctggtttatcggcatatggctcaaatatagtgcttctgaaaatatgcgacaatattggatgcaggagaaattgtgaaaatctcctgcaaggccaaacagagcagtctctcattctgaagggattttactatacaaatgttgtccaggttcagtgagctcagctaaccatgggcctgttgagctttcatccagtcacaaattcagatgatgtttcaggctttcatctgaatatggcaaacgttatttcttctttttttttcttgtaacaaaataatcttcttgattctgaagacggcactagacaaagcaatcatagagctgacttgatgcgccctattagaactagtatgaagcatcaagtactgtgtacatatcaaaaactgcaaattgccagtaacatctgcagcttagtagtatttcagtacttatttgaaccgaaatgattacagctgagatggtcttaatcaagcttatgtcgaacaagaacatttctgaagatgaattgatcaagcctctacaaactaccatgcttacaactgaatgacaaaagggcaggagccatgcaagttgctttgacacctttattccaaaatgctcactttactgatctttgccctgaaaaatatgctcactttaccgtgaaaaccattcttttcttgcattgggatttgggaggtcaggattatccgtccctattctctgggcatgagggagcatggaatcccactttgcattgtctcaaactttagcatctccctttcggctcttccctgtcagtaaagtaggatctacaaatattttagcaatagctgattagagaacaatttctctgaatctgaggttgtgtggatcaaatcttcaaaatactgaaaacatgttactttgtggacaatatgcatctttcaagactcaaccctgggtccagcataattttgaaaactagcacaaatttcaactgatgaaatacatatggtcagtttataagttatcaatcatcgaactgagctgtttacagcaaaagaagcatatgattttgaaaagtag
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| CDS seq | atggaaccttctgctagcgtgtggggagctttgctctctgcatgtgctatgcataataacgtcgatgttggagagattgcagcatttaggctatttgagttagaagaaggcagtgctagcaattatgttaccctctgtggaatttatgacgcagttggtcaatctgatggtgttgcagggttgagatcaaggatgagagaactcggcatggtgaagacgcctgggtgcagtcggatcgatgtgaagggaagagctcatgctttctaccaggggagcatcccaccaaaagaagcatatgattttgaaaagtag |
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| Protein seq | MEPSASVWGALLSACAMHNNVDVGEIAAFRLFELEEGSASNYVTLCGIYDAVGQSDGVAGLRSRMRELGMVKTPGCSRIDVKGRAHAFYQGSIPPKEAYDFEK |
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| Function | Pentatricopeptide repeat-containing protein At1g20230 [UniProtKB/Swiss-Prot:Q9LNU6] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_02g0026600 | OsNaBo_02g0026600.01 | Chr02 | 27969311 | 27971056 | + | NAM | ||
| CDS seq | atggaaccttctgctagcgtgtggggagctttgctctctgcatgtgctatgcataataacgtcgatgttggagagattgcagcatttaggctatttgagttagaagaaggcagtgctagcaattatgttaccctctgtggaatttatgacgcagttggtcaatctgatggtgttgcagggttgagatcaaggatgagagaactcggcatggtgaagacgcctgggtgcagtcggatcgatgtgaagggaagagctcatgctttctaccaggggagcatcccaccaaaagaagcatatgattttgaaaagtag
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| Protein seq | MEPSASVWGALLSACAMHNNVDVGEIAAFRLFELEEGSASNYVTLCGIYDAVGQSDGVAGLRSRMRELGMVKTPGCSRIDVKGRAHAFYQGSIPPKEAYDFEK |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0769900 | SBH | 0.759183 | 1.238924 | 0.454453 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g44480 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0769900 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0026900 | RBH | 0.0 | 0.0 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0027010 | RBH | 0.000000 | 0.000000 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0026880 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0026450 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0026560 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0437000 | SBH | 0.3611435 | 1.900748 | 0.3496175 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0003880 | SBH | 0.021490 | 0.054893 | 0.126535 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0464800 | SBH | 0.3597165 | 1.8503535 | 2.0963465 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0004020 | SBH | 0.094534 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0003830 | SBH | 0.063120 | 3.509796 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0004090 | SBH | 0.000000 | 5.220460 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0004060 | SBH | 0.000000 | 0.248817 | 0.096282 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0026260 | RBH | 0.0 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G026870 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0019270 | RBH | 0.799456 | 3.745464 | 1.254060 |
