Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_02g0027010 | OGI:02076190 | 15/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr02:26285560-26286859 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atggaaccttctgctagcgtgtggggagctttgctctctgcatgtgctatgcataataacgtcgatgttggagagattgcagcatttaggctatttgagttagaagaaggcagtgctagcaattatgttaccctctgtggaatttatgacgcagttggtcaatctgatggtgttgcagggttgagatcaaggatgagagaactcggcatggtgaagacgcctgggtgcagtcggatcgatgtgaagggaagagctcatgctttctaccaggggagcatcccacgttatttgaggggatgaatgctttgggtattagatcagttactagacgatatggcaaattcagattctgaagatgagcttgctgacttgtactttgagttaactctgcactgaagttctgatggtgaaagtcatgtattgctgcaatcaattttgttcaaggaaaagcatggatcttccttgatggctgccatgccactcatgaacaaatttgaatgaagaccaacaaataatcctaagaaattggtcaatctagatgccttggaagctgaaacttttcaggaccagtatctggagcaacatcctgcatcatggtatggtgccaggatgagagcaatagggtggctcttctggtccaaacgactggtatctagtctgaggtgactgcaatgacagtaatacatgtgtaatgttgtcagtctggtttatcggcatatggctcaaatatagtgcttctgaaaatatgcgacaatattggatgcaggagaaattgtgaatgattggcatataaaagattatctcttggattaaataaaagagcgagaatgaatggctagtatttaaaaatgggtggaaaattatttccctttcccatttgacaaacattgccttatagcaaaactgaacgatttgctcagcacctccgaccgagagcaggacaccgcgccgaccagagagcgcgcgagccgcagccgcgcgagaggagcgaagcaggccaagctattaggcccattgggcttgtcttttttgtgtaaatggggcttttgactaggaaaccctaaacccaaatttcccctttctccagttctcccatccccaatctgtgcccgtgcgcgaggaggggcgcggcagggcgtatagcggcgggcgcgcgcgcgggtcggcggcgcggcagccggcactggcagcgcggcgcagcgcagggagcaaggcagaggcagccaccaaccaacagggactgaagtcaggcagaggcaggcaacaagctaaagaggaggagaggaagaggagagattag
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| CDS seq | atggaaccttctgctagcgtgtggggagctttgctctctgcatgtgctatgcataataacgtcgatgttggagagattgcagcatttaggctatttgagttagaagaaggcagtgctagcaattatgttaccctctgtggaatttatgacgcagttggtcaatctgatggtgttgcagggttgagatcaaggatgagagaactcggcatggtgaagacgcctgggtgcagtcggatcgatgtgaagggaagagctcatgctttctaccaggggagcatcccacgaccagtatctggagcaacatcctgcatcatggaaaccctaaacccaaatttcccctttctccagttctcccatccccaatctgtgcccgtgcgcgaggaggggcgcggcagggcgtatagcggcgggcgcgcgcgcgggtcggcggcgcggcagccggcactggcagcgcggcgcagcgcagggagcaaggcagaggcagccaccaaccaacagggactgaagtcaggcagaggcaggcaacaagctaaagaggaggagaggaagaggagagattag
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| Protein seq | MEPSASVWGALLSACAMHNNVDVGEIAAFRLFELEEGSASNYVTLCGIYDAVGQSDGVAGLRSRMRELGMVKTPGCSRIDVKGRAHAFYQGSIPRPVSGATSCIMETLNPNFPFLQFSHPQSVPVREEGRGRAYSGGRARGSAARQPALAARRSAGSKAEAATNQQGLKSGRGRQQAKEEERKRRD |
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| Function | Pentatricopeptide repeat-containing protein At2g29760, chloroplastic [UniProtKB/Swiss-Prot:O82380] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_02g0027010 | OsKeNa_02g0027010.01 | Chr02 | 26285560 | 26286859 | + | NAM | ||
| CDS seq | atggaaccttctgctagcgtgtggggagctttgctctctgcatgtgctatgcataataacgtcgatgttggagagattgcagcatttaggctatttgagttagaagaaggcagtgctagcaattatgttaccctctgtggaatttatgacgcagttggtcaatctgatggtgttgcagggttgagatcaaggatgagagaactcggcatggtgaagacgcctgggtgcagtcggatcgatgtgaagggaagagctcatgctttctaccaggggagcatcccacgaccagtatctggagcaacatcctgcatcatggaaaccctaaacccaaatttcccctttctccagttctcccatccccaatctgtgcccgtgcgcgaggaggggcgcggcagggcgtatagcggcgggcgcgcgcgcgggtcggcggcgcggcagccggcactggcagcgcggcgcagcgcagggagcaaggcagaggcagccaccaaccaacagggactgaagtcaggcagaggcaggcaacaagctaaagaggaggagaggaagaggagagattag
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| Protein seq | MEPSASVWGALLSACAMHNNVDVGEIAAFRLFELEEGSASNYVTLCGIYDAVGQSDGVAGLRSRMRELGMVKTPGCSRIDVKGRAHAFYQGSIPRPVSGATSCIMETLNPNFPFLQFSHPQSVPVREEGRGRAYSGGRARGSAARQPALAARRSAGSKAEAATNQQGLKSGRGRQQAKEEERKRRD |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 0.000000 | 0.000000 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0769900 | SBH | 0.759183 | 1.238924 | 0.454453 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g43070 | RBH | 0.0 | 0.000000 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0769900 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0026900 | RBH | 0.0 | 0.0 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0026880 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0026460 | RBH | 0.624004 | 0.472932 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0026560 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0343600 | SBH | 0.633975 | 1.7329575 | 1.2364055 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0026370 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0368800 | SBH | 0.757119 | 1.2539675 | 2.702005 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0004020 | SBH | 0.094534 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0026390 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0034920 | SBH | 0.000000 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0026570 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0026260 | RBH | 0.0 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G026870 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0026600 | RBH | 0.0 | 0.0 | 0.0 |
