Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os02g44480 | OGI:02076190 | 15/16 | Nipponbare | IRGSP 1.0 | MSU | Chr02:26922512-26924209 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | CTATGGCATTGCTGTTCGGCATTGTACAGATCTTGCCTCAACCAAACTAGATCCTGGTTCTTTTAGGAGGCCCCTTTCCACCATCATTCTCCGGACATCCTGAACATCCCTCCATCTGTCAGCTGCAGCATATATGTTACCAAGCAGCACGTAACTCCCAGTGTTCTCCGGATCAAGCTGAAATAATCGCTTTGCCGCAACCTCCCCAAACTCGACATTCTTGTGTAGAACACAGGCACCAAGCAGAGCACCCCATACCGAGGTGCTCGGCTCGAATGGCATATCTTGGATGAGACGATGAGCCTCCTCAATCCTCCCAGCACGGCCAAGCATGTCAACCAGGCACGAGTAGTGCTCGCCATTTGGCATCAAACCATGGACGTTGCGCATGTCCTTGAACACCTTAATGCCTTCGTCTATCATGCCGGCGTGGCTGCATGCATACAGCAAAGTGGCGATGGTCACAGTATTCGGCTTCCCTCCTGACTCCACCATCCTGTCGTAGAGCAGGATGGCAGTTCGGGCGTGACCATGTATACCGTACCCGGCGATGATCGTTGTCCAGGCAACAACGTCCTTCTCAGGTAGCCACTGGAAGAGAGCCCACGCAGCATCCAAGTCACCAGCCTTAGAATAGACATCAATCAAACCAGTGGCGATCTCTGTGCTTCTGAGGAATCCGAGAGTCAGTAAGAAACAGTGAATGTTCTTCCCTTCTTTCAGGTCTGCAGATTCTGCATAGGCCGGCAGGATGCTTGCCATTGTTGCAGAGTCTGGGCGCACCGATTCAGCAATCATCCGCTTGAACAATTCTATAGCTTTCTTCTCCCGTCCACTGACGGTATAACCAGACAAGGCTGCATTCCATGTTTCTGCACGCCATGAGCCCCTCTCAAGTGTTAATCTCATCAGCTTCATCTTACCGCACCTCGCATAAGCGTCGATAAGCGCAGTTTCAACAGCAATGTCTGATTTAAGGCCAAGTCTAATGCAGAGTGCATGTGTGCACTTGGCATGCTTCCCTGACGGCATGCTGGCGCATGCTGAGAGCAGATACACCATTGTCACTCCATTGGGCCATGCTGCCCCAGACATCAGCATCTGACAACCAAGAGAAATGGCCTCAAAAGCACGGTCGTTCAGCACATAAGCGCCAATCATCGCTGTCCAAGAAACAACATCTTTATCATGTTTGCAGTGATCAAACACCCTTCGTGCATCCTCCAAGCTCCTACACTTCCCGTACATGTCGATCAATGCGTTCTTCACTGCAACATAATCCCCCAAGCCTTTGTCCTCAACAAGCCGGTGCACGGCTCTCCCAGTGTTCAAGTCCTTGGCTTGCGCACAAGCTGGCAGCACTGACACAACCGTGGCACGGTCGATCCCGACACCATCAGCGGCCATCTCGCCGAACACTTCCAGCGCCCTCTCCGCGTAGCCGTTCTTGACGCACCCGGCGATGACCGCATTCCAGGACACGACTGTCCGGTTCCGCATCGCCCCGAACACCGCCTCCGCTGCGCCCACGTCGCCGCAGCTCATGTACATGGAAATGAGGGCGTTCTGCACGTACGTGTCGCCGCCGAAACCAGCGGCGAGCGCGCGGCAGTGCACGGCACGCCCATGGCGGCCGAGACGAAGGCCGGCGCAGGCCTTCGCGGCGAAGGGGAAGGTGAGGTGGTCGAAGGCGCGCAT
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| CDS seq | ATGCGCGCCTTCGACCACCTCACCTTCCCCTTCGCCGCGAAGGCCTGCGCCGGCCTTCGTCTCGGCCGCCATGGGCGTGCCGTGCACTGCCGCGCGCTCGCCGCTGGTTTCGGCGGCGACACGTACGTGCAGAACGCCCTCATTTCCATGTACATGAGCTGCGGCGACGTGGGCGCAGCGGAGGCGGTGTTCGGGGCGATGCGGAACCGGACAGTCGTGTCCTGGAATGCGGTCATCGCCGGGTGCGTCAAGAACGGCTACGCGGAGAGGGCGCTGGAAGTGTTCGGCGAGATGGCCGCTGATGGTGTCGGGATCGACCGTGCCACGGTTGTGTCAGTGCTGCCAGCTTGTGCGCAAGCCAAGGACTTGAACACTGGGAGAGCCGTGCACCGGCTTGTTGAGGACAAAGGCTTGGGGGATTATGTTGCAGTGAAGAACGCATTGATCGACATGTACGGGAAGTGTAGGAGCTTGGAGGATGCACGAAGGGTGTTTGATCACTGCAAACATGATAAAGATGTTGTTTCTTGGACAGCGATGATTGGCGCTTATGTGCTGAACGACCGTGCTTTTGAGGCCATTTCTCTTGGTTGTCAGATGCTGATGTCTGGGGCAGCATGGCCCAATGGAGTGACAATGGTGTATCTGCTCTCAGCATGCGCCAGCATGCCGTCAGGGAAGCATGCCAAGTGCACACATGCACTCTGCATTAGACTTGGCCTTAAATCAGACATTGCTGTTGAAACTGCGCTTATCGACGCTTATGCGAGGTGCGGTAAGATGAAGCTGATGAGATTAACACTTGAGAGGGGCTCATGGCGTGCAGAAACATGGAATGCAGCCTTGTCTGGTTATACCGTCAGTGGACGGGAGAAGAAAGCTATAGAATTGTTCAAGCGGATGATTGCTGAATCGGTGCGCCCAGACTCTGCAACAATGGCAAGCATCCTGCCGGCCTATGCAGAATCTGCAGACCTGAAAGAAGGGAAGAACATTCACTGTTTCTTACTGACTCTCGGATTCCTCAGAAGCACAGAGATCGCCACTGGTTTGATTGATGTCTATTCTAAGGCTGGTGACTTGGATGCTGCGTGGGCTCTCTTCCAGTGGCTACCTGAGAAGGACGTTGTTGCCTGGACAACGATCATCGCCGGGTACGGTATACATGGTCACGCCCGAACTGCCATCCTGCTCTACGACAGGATGGTGGAGTCAGGAGGGAAGCCGAATACTGTGACCATCGCCACTTTGCTGTATGCATGCAGCCACGCCGGCATGATAGACGAAGGCATTAAGGTGTTCAAGGACATGCGCAACGTCCATGGTTTGATGCCAAATGGCGAGCACTACTCGTGCCTGGTTGACATGCTTGGCCGTGCTGGGAGGATTGAGGAGGCTCATCGTCTCATCCAAGATATGCCATTCGAGCCGAGCACCTCGGTATGGGGTGCTCTGCTTGGTGCCTGTGTTCTACACAAGAATGTCGAGTTTGGGGAGGTTGCGGCAAAGCGATTATTTCAGCTTGATCCGGAGAACACTGGGAGTTACGTGCTGCTTGGTAACATATATGCTGCAGCTGACAGATGGAGGGATGTTCAGGATGTCCGGAGAATGATGGTGGAAAGGGGCCTCCTAAAAGAACCAGGATCTAGTTTGGTTGAGGCAAGATCTGTACAATGCCGAACAGCAATGCCATAG
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| Protein seq | MRAFDHLTFPFAAKACAGLRLGRHGRAVHCRALAAGFGGDTYVQNALISMYMSCGDVGAAEAVFGAMRNRTVVSWNAVIAGCVKNGYAERALEVFGEMAADGVGIDRATVVSVLPACAQAKDLNTGRAVHRLVEDKGLGDYVAVKNALIDMYGKCRSLEDARRVFDHCKHDKDVVSWTAMIGAYVLNDRAFEAISLGCQMLMSGAAWPNGVTMVYLLSACASMPSGKHAKCTHALCIRLGLKSDIAVETALIDAYARCGKMKLMRLTLERGSWRAETWNAALSGYTVSGREKKAIELFKRMIAESVRPDSATMASILPAYAESADLKEGKNIHCFLLTLGFLRSTEIATGLIDVYSKAGDLDAAWALFQWLPEKDVVAWTTIIAGYGIHGHARTAILLYDRMVESGGKPNTVTIATLLYACSHAGMIDEGIKVFKDMRNVHGLMPNGEHYSCLVDMLGRAGRIEEAHRLIQDMPFEPSTSVWGALLGACVLHKNVEFGEVAAKRLFQLDPENTGSYVLLGNIYAAADRWRDVQDVRRMMVERGLLKEPGSSLVEARSVQCRTAMP |
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| Function | Pentatricopeptide repeat-containing protein At5g39350 [UniProtKB/Swiss-Prot:Q9FLZ9] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os02g44480 | LOC_Os02g44480.1 | Chr02 | 26922512 | 26924209 | - | MSU_osa1r7 | ||
| CDS seq | ATGCGCGCCTTCGACCACCTCACCTTCCCCTTCGCCGCGAAGGCCTGCGCCGGCCTTCGTCTCGGCCGCCATGGGCGTGCCGTGCACTGCCGCGCGCTCGCCGCTGGTTTCGGCGGCGACACGTACGTGCAGAACGCCCTCATTTCCATGTACATGAGCTGCGGCGACGTGGGCGCAGCGGAGGCGGTGTTCGGGGCGATGCGGAACCGGACAGTCGTGTCCTGGAATGCGGTCATCGCCGGGTGCGTCAAGAACGGCTACGCGGAGAGGGCGCTGGAAGTGTTCGGCGAGATGGCCGCTGATGGTGTCGGGATCGACCGTGCCACGGTTGTGTCAGTGCTGCCAGCTTGTGCGCAAGCCAAGGACTTGAACACTGGGAGAGCCGTGCACCGGCTTGTTGAGGACAAAGGCTTGGGGGATTATGTTGCAGTGAAGAACGCATTGATCGACATGTACGGGAAGTGTAGGAGCTTGGAGGATGCACGAAGGGTGTTTGATCACTGCAAACATGATAAAGATGTTGTTTCTTGGACAGCGATGATTGGCGCTTATGTGCTGAACGACCGTGCTTTTGAGGCCATTTCTCTTGGTTGTCAGATGCTGATGTCTGGGGCAGCATGGCCCAATGGAGTGACAATGGTGTATCTGCTCTCAGCATGCGCCAGCATGCCGTCAGGGAAGCATGCCAAGTGCACACATGCACTCTGCATTAGACTTGGCCTTAAATCAGACATTGCTGTTGAAACTGCGCTTATCGACGCTTATGCGAGGTGCGGTAAGATGAAGCTGATGAGATTAACACTTGAGAGGGGCTCATGGCGTGCAGAAACATGGAATGCAGCCTTGTCTGGTTATACCGTCAGTGGACGGGAGAAGAAAGCTATAGAATTGTTCAAGCGGATGATTGCTGAATCGGTGCGCCCAGACTCTGCAACAATGGCAAGCATCCTGCCGGCCTATGCAGAATCTGCAGACCTGAAAGAAGGGAAGAACATTCACTGTTTCTTACTGACTCTCGGATTCCTCAGAAGCACAGAGATCGCCACTGGTTTGATTGATGTCTATTCTAAGGCTGGTGACTTGGATGCTGCGTGGGCTCTCTTCCAGTGGCTACCTGAGAAGGACGTTGTTGCCTGGACAACGATCATCGCCGGGTACGGTATACATGGTCACGCCCGAACTGCCATCCTGCTCTACGACAGGATGGTGGAGTCAGGAGGGAAGCCGAATACTGTGACCATCGCCACTTTGCTGTATGCATGCAGCCACGCCGGCATGATAGACGAAGGCATTAAGGTGTTCAAGGACATGCGCAACGTCCATGGTTTGATGCCAAATGGCGAGCACTACTCGTGCCTGGTTGACATGCTTGGCCGTGCTGGGAGGATTGAGGAGGCTCATCGTCTCATCCAAGATATGCCATTCGAGCCGAGCACCTCGGTATGGGGTGCTCTGCTTGGTGCCTGTGTTCTACACAAGAATGTCGAGTTTGGGGAGGTTGCGGCAAAGCGATTATTTCAGCTTGATCCGGAGAACACTGGGAGTTACGTGCTGCTTGGTAACATATATGCTGCAGCTGACAGATGGAGGGATGTTCAGGATGTCCGGAGAATGATGGTGGAAAGGGGCCTCCTAAAAGAACCAGGATCTAGTTTGGTTGAGGCAAGATCTGTACAATGCCGAACAGCAATGCCATAG
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| Protein seq | MRAFDHLTFPFAAKACAGLRLGRHGRAVHCRALAAGFGGDTYVQNALISMYMSCGDVGAAEAVFGAMRNRTVVSWNAVIAGCVKNGYAERALEVFGEMAADGVGIDRATVVSVLPACAQAKDLNTGRAVHRLVEDKGLGDYVAVKNALIDMYGKCRSLEDARRVFDHCKHDKDVVSWTAMIGAYVLNDRAFEAISLGCQMLMSGAAWPNGVTMVYLLSACASMPSGKHAKCTHALCIRLGLKSDIAVETALIDAYARCGKMKLMRLTLERGSWRAETWNAALSGYTVSGREKKAIELFKRMIAESVRPDSATMASILPAYAESADLKEGKNIHCFLLTLGFLRSTEIATGLIDVYSKAGDLDAAWALFQWLPEKDVVAWTTIIAGYGIHGHARTAILLYDRMVESGGKPNTVTIATLLYACSHAGMIDEGIKVFKDMRNVHGLMPNGEHYSCLVDMLGRAGRIEEAHRLIQDMPFEPSTSVWGALLGACVLHKNVEFGEVAAKRLFQLDPENTGSYVLLGNIYAAADRWRDVQDVRRMMVERGLLKEPGSSLVEARSVQCRTAMP
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0735800 | SBH | 2.601744 | 4.392081 | 1.518733 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g43430 | RBH | 0.249681 | 0.378304 | 0.099572 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0735800 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0032770 | SBH | 0.408150 | 4.086637 | 1.661972 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0032870 | SBH | 0.472739 | 0.418689 | 0.867839 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0026880 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0026450 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0027690 | RBH | 0.0 | 0.839354 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0437000 | RBH | 0.3611435 | 1.900748 | 0.3496175 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0027490 | RBH | 0.0 | 0.038988 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0464800 | RBH | 0.3597165 | 1.8503535 | 2.0963465 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0027820 | RBH | 0.0 | 0.051923 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0027510 | RBH | 0.0 | 0.729601 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0032660 | SBH | 0.924539 | 2.478112 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0027700 | RBH | 0.0 | 0.000000 | 0.020240 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0027390 | RBH | 0.0 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G027970 | RBH | 0.0 | 0.199067 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0027720 | RBH | 0.107086 | 1.781451 | 0.0 |
