Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_02g0032870 | OGI:02087140 | 16/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr02:31040528-31043087 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ggatggattcttgccgcctcctgcacccttatccacagccgctccctctccctccccctccccctcccccgacctctactcctcgacctacccacctccaatggggtgtcctccgccgccgccgccgccgccaccacttcctccggtgcgtcgccgcctccgctgccaccctgcagaaggaactcacggtgccgcgcaccccaacagccgcgcagagccccggtccagtgaacccgcctacgctgttcgacagaatgcccgagaggagcgtcgcgacggtttccgctgcggataacctgctcgacgaaatgtctcggacgtgcggcgcgggccagcgtggtcggcctctggaggcgcctcctcgggacggcggcgggaagagcgcgagcgccgcgatcgtggcgctggcgcatgccggccggcacgcggaggtcgtcgagctcttctgccggatgcggaggggcggcgtccccgtaagcaggttcgtgctcccgagcgtgctcgcggcttgcgccggcctgcgggacatcgggatgctccgagccgtgcacgccttggtcatcaagtgcggcctgtgccagcatgtcatcgtgggcactgcattggttgacgggtatactgattttggattggtggatgatgcgaggaaggcgttcgatgagataacagacgccaatatagtttcttggagtgtgctcattggtggctatgcccgttcttctcggtgggaagaaacattggatgctttctccgcaatgcggcgtgctggggtgcttccaaatgattctgttcttgtaatggcgattcaggcgtgcggtgcattgggacgcctggtacatgggaagcagctgcatggcttagcagttgtccttggatttgataggaatgctactgtttggaactgcctgatggacatgtatgggaagtgtggtgacattgacagttgcaagatggtttttgagacgatgatcggcagggatcaagtgagttggaacacgctaatctcaagttatgcccgtgttggtctttgtgaagaggcactcgacatgattgtgcagatgcaagagtctggttacattgtcgatcgcttcacccttggcagcggagttacagcttgtgcccgtttggctgatatagatagcggccgtgcattccatggttatttggttagaagattgttggatactgatgtcatccagggcagcgcgcttgttgacatgtatggtaaatgccacaacatggaacttgcacacattgtattcgacaggatggatgagaggaattatgtatcatgggatgcactcttgtctgggtatgttgagaatgagcaggttgatttagcacttgagattttccggcaaatgggttgtgcaaacataaagtataaccagcataattttgctaaccttcttaagctctgtggcagtcagaggtataaagagtatggaaggcaaattcacgggcatgccattaagaccataaacaagatgaatgtggttttggaaacggagcttattgacatgtacgcaaagtgtggctgcattgaggtcgctcggctactatttcttcggatgaatgagagaaaccttatttcctggaatgccctactttcaggttatgcagcagatggacagccagttgcaacgataaatatttaccgccaaatggagctggcatgcattaggcctgacaaatacactttggcagggcttttaagcctttgccggtaccaaggactattgcattatggaaggcagatacacgctcatctcatcaagatgggttctgaaatgaacgtggtaatgcaaactatacttgttcatatgtatatcaagtgcatgcgtcagcaggatgctgaaaatgtttgtataatgatcgaagaaaggaattcatatgtgcttgatgcattttcaaaggtctatggagatgactacttgatctgaagaaaagaaaatatctcattttacactggagttagaatgtatgggaatacttttgtcttccttgtggatacaaatcttagatgcaaaatttgtatttcctgtatactaaggactatagtagtttttcgtcactaacttggattctagttctgtgattgttcaaggaaaaggaagtgcctcatatcctaaaaagagggtaatagtagagaagagttgttgtcaagtcaaatagagtatacattctctgccttcagtctggtttgatgatatgtttatgcatgtggacctgtactgtatatgttctattgaacagctgattgatagctgtatacaaggttcattttttcatgaaatcaagattgtggactgccttttttcagccgtagcattacatttgtccgtgaatcgcaagggtttcaaagatcaaattttagctactactactagattccaacagtcatatgatcataagggaaagtaggcaggttcattctggaagacagtgggttttagtttctgtagaatgatgtagtgcaaaccactgctttaaccggcctgtaagagtttaatcccacatgaatgaaaagaaaaatgcgcaaggattgcgtgaattgagc
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| CDS seq | atggattcttgccgcctcctgcacccttatccacagccgctccctctccctccccctccccctcccccgacctctactcctcgacctacccacctccaatggggtgtcctccgccgccgccgccgccgccaccacttcctccggtgcgtcgccgcctccgctgccaccctgcagaaggaactcacggtgccgcgcaccccaacagccgcgcagagccccggtccagtgaacccgcctacgctgttcgacagaatgcccgagaggagcgtcgcgacggtttccgctgcggataacctgctcgacgaaatgtctcggacgtgcggcgcgggccagcgtggtcggcctctggaggcgcctcctcgggacggcggcgggaagagcgcgagcgccgcgatcgtggcgctggcgcatgccggccggcacgcggaggtcgtcgagctcttctgccggatgcggaggggcggcgtccccgtaagcaggttcgtgctcccgagcgtgctcgcggcttgcgccggcctgcgggacatcgggatgctccgagccgtgcacgccttggtcatcaagtgcggcctgtgccagcatgtcatcgtgggcactgcattggttgacgggtatactgattttggattggtggatgatgcgaggaaggcgttcgatgagataacagacgccaatatagtttcttggagtgtgctcattggtggctatgcccgttcttctcggtgggaagaaacattggatgctttctccgcaatgcggcgtgctggggtgcttccaaatgattctgttcttgtaatggcgattcaggcgtgcggtgcattgggacgcctggtacatgggaagcagctgcatggcttagcagttgtccttggatttgataggaatgctactgtttggaactgcctgatggacatgtatgggaagtgtggtgacattgacagttgcaagatggtttttgagacgatgatcggcagggatcaagtgagttggaacacgctaatctcaagttatgcccgtgttggtctttgtgaagaggcactcgacatgattgtgcagatgcaagagtctggttacattgtcgatcgcttcacccttggcagcggagttacagcttgtgcccgtttggctgatatagatagcggccgtgcattccatggttatttggttagaagattgttggatactgatgtcatccagggcagcgcgcttgttgacatgtatggtaaatgccacaacatggaacttgcacacattgtattcgacaggatggatgagaggaattatgtatcatgggatgcactcttgtctgggtatgttgagaatgagcaggttgatttagcacttgagattttccggcaaatgggttgtgcaaacataaagtataaccagcataattttgctaaccttcttaagctctgtggcagtcagaggtataaagagtatggaaggcaaattcacgggcatgccattaagaccataaacaagatgaatgtggttttggaaacggagcttattgacatgtacgcaaagtgtggctgcattgaggtcgctcggctactatttcttcggatgaatgagagaaaccttatttcctggaatgccctactttcaggttatgcagcagatggacagccagttgcaacgataaatatttaccgccaaatggagctggcatgcattaggcctgacaaatacactttggcagggcttttaagcctttgccggtaccaaggactattgcattatggaaggcagatacacgctcatctcatcaagatgggttctgaaatgaacgtggtaatgcaaactatacttgttcatatgtatatcaagtgcatgcgtcagcaggatgctgaaaatgtttgtataatgatcgaagaaaggaattcatatgtgcttgatgcattttcaaaggtctatggagatgactacttgatctga
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| Protein seq | MDSCRLLHPYPQPLPLPPPPPPPTSTPRPTHLQWGVLRRRRRRHHFLRCVAASAATLQKELTVPRTPTAAQSPGPVNPPTLFDRMPERSVATVSAADNLLDEMSRTCGAGQRGRPLEAPPRDGGGKSASAAIVALAHAGRHAEVVELFCRMRRGGVPVSRFVLPSVLAACAGLRDIGMLRAVHALVIKCGLCQHVIVGTALVDGYTDFGLVDDARKAFDEITDANIVSWSVLIGGYARSSRWEETLDAFSAMRRAGVLPNDSVLVMAIQACGALGRLVHGKQLHGLAVVLGFDRNATVWNCLMDMYGKCGDIDSCKMVFETMIGRDQVSWNTLISSYARVGLCEEALDMIVQMQESGYIVDRFTLGSGVTACARLADIDSGRAFHGYLVRRLLDTDVIQGSALVDMYGKCHNMELAHIVFDRMDERNYVSWDALLSGYVENEQVDLALEIFRQMGCANIKYNQHNFANLLKLCGSQRYKEYGRQIHGHAIKTINKMNVVLETELIDMYAKCGCIEVARLLFLRMNERNLISWNALLSGYAADGQPVATINIYRQMELACIRPDKYTLAGLLSLCRYQGLLHYGRQIHAHLIKMGSEMNVVMQTILVHMYIKCMRQQDAENVCIMIEERNSYVLDAFSKVYGDDYLI |
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| Function | Pentatricopeptide repeat-containing protein At4g21300 [UniProtKB/Swiss-Prot:Q9STE1] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_02g0032870 | OsKeNa_02g0032870.01 | Chr02 | 31040528 | 31043087 | + | NAM | ||
| CDS seq | atggattcttgccgcctcctgcacccttatccacagccgctccctctccctccccctccccctcccccgacctctactcctcgacctacccacctccaatggggtgtcctccgccgccgccgccgccgccaccacttcctccggtgcgtcgccgcctccgctgccaccctgcagaaggaactcacggtgccgcgcaccccaacagccgcgcagagccccggtccagtgaacccgcctacgctgttcgacagaatgcccgagaggagcgtcgcgacggtttccgctgcggataacctgctcgacgaaatgtctcggacgtgcggcgcgggccagcgtggtcggcctctggaggcgcctcctcgggacggcggcgggaagagcgcgagcgccgcgatcgtggcgctggcgcatgccggccggcacgcggaggtcgtcgagctcttctgccggatgcggaggggcggcgtccccgtaagcaggttcgtgctcccgagcgtgctcgcggcttgcgccggcctgcgggacatcgggatgctccgagccgtgcacgccttggtcatcaagtgcggcctgtgccagcatgtcatcgtgggcactgcattggttgacgggtatactgattttggattggtggatgatgcgaggaaggcgttcgatgagataacagacgccaatatagtttcttggagtgtgctcattggtggctatgcccgttcttctcggtgggaagaaacattggatgctttctccgcaatgcggcgtgctggggtgcttccaaatgattctgttcttgtaatggcgattcaggcgtgcggtgcattgggacgcctggtacatgggaagcagctgcatggcttagcagttgtccttggatttgataggaatgctactgtttggaactgcctgatggacatgtatgggaagtgtggtgacattgacagttgcaagatggtttttgagacgatgatcggcagggatcaagtgagttggaacacgctaatctcaagttatgcccgtgttggtctttgtgaagaggcactcgacatgattgtgcagatgcaagagtctggttacattgtcgatcgcttcacccttggcagcggagttacagcttgtgcccgtttggctgatatagatagcggccgtgcattccatggttatttggttagaagattgttggatactgatgtcatccagggcagcgcgcttgttgacatgtatggtaaatgccacaacatggaacttgcacacattgtattcgacaggatggatgagaggaattatgtatcatgggatgcactcttgtctgggtatgttgagaatgagcaggttgatttagcacttgagattttccggcaaatgggttgtgcaaacataaagtataaccagcataattttgctaaccttcttaagctctgtggcagtcagaggtataaagagtatggaaggcaaattcacgggcatgccattaagaccataaacaagatgaatgtggttttggaaacggagcttattgacatgtacgcaaagtgtggctgcattgaggtcgctcggctactatttcttcggatgaatgagagaaaccttatttcctggaatgccctactttcaggttatgcagcagatggacagccagttgcaacgataaatatttaccgccaaatggagctggcatgcattaggcctgacaaatacactttggcagggcttttaagcctttgccggtaccaaggactattgcattatggaaggcagatacacgctcatctcatcaagatgggttctgaaatgaacgtggtaatgcaaactatacttgttcatatgtatatcaagtgcatgcgtcagcaggatgctgaaaatgtttgtataatgatcgaagaaaggaattcatatgtgcttgatgcattttcaaaggtctatggagatgactacttgatctga
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| Protein seq | MDSCRLLHPYPQPLPLPPPPPPPTSTPRPTHLQWGVLRRRRRRHHFLRCVAASAATLQKELTVPRTPTAAQSPGPVNPPTLFDRMPERSVATVSAADNLLDEMSRTCGAGQRGRPLEAPPRDGGGKSASAAIVALAHAGRHAEVVELFCRMRRGGVPVSRFVLPSVLAACAGLRDIGMLRAVHALVIKCGLCQHVIVGTALVDGYTDFGLVDDARKAFDEITDANIVSWSVLIGGYARSSRWEETLDAFSAMRRAGVLPNDSVLVMAIQACGALGRLVHGKQLHGLAVVLGFDRNATVWNCLMDMYGKCGDIDSCKMVFETMIGRDQVSWNTLISSYARVGLCEEALDMIVQMQESGYIVDRFTLGSGVTACARLADIDSGRAFHGYLVRRLLDTDVIQGSALVDMYGKCHNMELAHIVFDRMDERNYVSWDALLSGYVENEQVDLALEIFRQMGCANIKYNQHNFANLLKLCGSQRYKEYGRQIHGHAIKTINKMNVVLETELIDMYAKCGCIEVARLLFLRMNERNLISWNALLSGYAADGQPVATINIYRQMELACIRPDKYTLAGLLSLCRYQGLLHYGRQIHAHLIKMGSEMNVVMQTILVHMYIKCMRQQDAENVCIMIEERNSYVLDAFSKVYGDDYLI
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.472739 | 0.418689 | 0.867839 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0735800 | RBH | 2.601744 | 4.392081 | 1.518733 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g50280 | RBH | 1.517679 | 2.489075 | 0.407137 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0735800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0032770 | RBH | 0.408150 | 4.086637 | 1.661972 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0009870 | RBH | 0.141559 | 1.750063 | 0.172870 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0032750 | RBH | 1.971943 | 0.870885 | 2.586320 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0032340 | RBH | 0.277923 | 0.046083 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0032480 | RBH | 11.633341 | 1.346765 | 4.408669 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0503500 | RBH | 9.87553 | 4.2939195 | 2.187986 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0032260 | RBH | 0.403450 | 0.000000 | 0.120150 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0532400 | RBH | 0 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0032540 | RBH | 0.292406 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0032320 | RBH | 0.426823 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0032660 | RBH | 0.924539 | 2.478112 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0032500 | RBH | 1.278907 | 0.034437 | 0.631546 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0032130 | RBH | 0.576755 | 1.086634 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G032810 | RBH | 0.181947 | 0.349068 | 1.078600 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0032550 | RBH | 1.934350 | 2.327143 | 4.122991 |
