Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsMH63_12G0231400 | OGI:12044020 | 13/16 | Minghui 63 | MH63RS3 | HZAU | Chr12:15975058-15978083 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TTACATAGCAGCTGGATAGTTTTGTATTATCCATTGGGCCACATATTCCTTAATAGAATCCAGTGGTCTACCCTTCAACATGGCAGCTATATTTTCATGGGTCGCGAGGTAAGTCTGCAGCTCAAGTCGAACCATGACAGGGTATTCCGTCATCTCATCAATTATCTTGAATAGGGATTCATTTGGATATGTCATATGTGTGAAACGCATGGTTTCAGACATATTATCCATAGCCCCTGTTATCTCATAAACCACATTATCATCAGCTCTAACTCTTTTACCTTTATCAGTTTTTCTACCTTTTGCACGCCTAGAAGATGAGCTACTTCCAGTACTGTTCTCTTGATCTGGAAGACAACCTGAGTCATAATTTGATGAAGGGTCAACATCACCAGGACTGCCATTTTTATCACCAATAAAATCATCATCTTCCATTGGACGGTCATATGGTGTTTGCAGAACATTAAATTCCCCTGTTGCATGCTTGTCTTGAAAAATAAACTCCATTTCATCATACCAACGTATGGGGACGTTAATGAATTTAGCCCTTTTATCTTTGGCCTACACATGACAATAAAATGGTAAGAAACATAGACATCCATATAGTGTAAACACGATAGTTATTTGCTAGGAAAGAATAGTTAGAACACTCACATTAGTCATTCGAACAACTTCAGTCTCATCATATAGGATTTTTTTCTCAACGTCATCAAAATTGGCCCCGCTCAAATTCTTTGCCTCCATAATCACCTTCCACTGAGCCTTCAACTTGTGAAACTTGTGATAAACTTGTCGACTTGTGAAGTTTGTGTGATACTTGCCATTAATTTGCTTTGCACATTCCTCATGATGGACTTCTTTAAATACAAGTTGTCTTCCATCAGCCAGTATCTTCTCCTTGTAGTATCGCAACATTTCCTCAACAACCTGGGGCTGCCAAACCACATTGTTCCCTGCCATATTGCTGCAAAAAGTATAAAACATTATGATAACAAGTCAAGAATGACATGGTTCAGTTGTTCCGCCACTTAAATCATGTAAATATAGGAAGCATACATAGCATGACAGTGCAATACAATTCAAGTATACATTGTTCTTTGTATGGACTAGTTTGATCCTAAAGTAAGATAAAAACATATATGCAGGAACAGAATTTCACAGCACAAATCATCCATGCCTAACATTATGTCTATTTCTCCACATCCTTCTTGCCATATTGTCTCTATCTCGCAGCACCTCTCTTTGCTCTTCACGCAAATCACGTTGAACTCGCCCTGGTGATCTTGGGTAATTTTCAAACCATCTTCGCTCAGAATAGACTAGCTCATCAGGACCACCATTTTGCAAGATCCAATTGTGAAGAATGCAACATGCTATGACGACCCTTACTTGGGATCGAAAAGGATAATATGGCCTAGTTGTAAGAACTTTGAATCGGTTTTTTAGAGATCCAAACGCTCTCTCAACAGTAGTACGGAGAGAAGAGTGTCTTAAGTTGAATAGTTCATTTGGTGTCTTGGGTTTATTGCTTTTCCCTTCACACAAATGGTATCGGGTTTGGCGAAACGGTGGTAGGAATCCTCTCCTAGCAGCATACCCAGCATCCGCAAGATAGTACTTCCCTGTTATAATATCATTAGCATGATCAATTCTACTAGGTGTATGCATAAGTTATATTTGAGATATAAAATTATTAGAGGTGCAGCAACCTTCAGGGACTCGTAGGCCATTAGGATGCTCAAGAGAGTGTCTCAGTACTGTTGAATCATGTGCTGAACCCTCCCAACCAGCACTAATATATGTAAACATCAAATCAAAGTCAACAGCAGCAAGAACATTACATTTTGTGTAGGAAATGGCTTTCTACCCCGGAATCTATCCGATATTCGAGATGGAACATTGCATGGAACATGGGTCCCATCAATGGCACCAATGCAGTCCTGACCATTCAATTACCAACCAAGTAAGTACATGCAAAACTCCAACATGTTTTTAATTTTAGATGAAATGTGAATAAAGTTATACCTTAAAATAAGGATCAAACCTTTGGTTGCCCAAAATCTTTGATGGCGTATCATGCGTGCGATGCCTAAGCATTTCTGGTCCAAGATGCCCGATTGCATATAATACTTTATTGAAGTACCGACTCACAGTTTCACCAGACCTTGTGAAGTGGAAGCCAATATCGCCATTTTTTTTGTGATGTCCTACCGTAGTGAGAAACATGGCAATCTGTTCCTCTACAGTACAGTGCCAAGTATCTCTCAATGCTCCCATACTACGCAGCTTATGACATAGTTTAAAGAACACGGTTTTACCCATACGTAGTTCACAGATACAATGTCTCTCCTCACCACAATAGAGATTTTGTAAATAGACCATCCTCTCTCTATTTTTCTCTAACAACGAGTATCTAATAGGGTCACTATTCTTGCGCTTATATATGATCAATGTCCAGTATGCCACTAAGAATGCACTGAAGAATGCAATTCTTCTATTAATTAGTGCACTGCCATCCATCTATAAATAAAAATATAAAAAAAATGAATACTGATTAGATTACATGCAGAGTAATATGCATAAAGTAAATGCGCCAGAAAGAAAGGAACGAGCATAACAAAATAAAACTATGTATCAACATAATAAATACTTATTAGGTGCTGATCGATAAAAGCACCTTTATTCCTGTATTGCAACTCATGTTTGTTCTGAATCCTGTTTTTCGTACCAATTAATCAAACACTATATAGAAGTACGGCTATACGGCAGTGTCAAATAATATGAACACAAGGGAAAAAATTAATGGACAAATGACGATCTAAAGAGCAAATACCAAACATCAATGTATAATGCATACTTCTACTCTTGATTGGTGCCGACGGCCAGAAAGTTCCTAGCTACTACTACCCATACCATCGACAATCCCCATTAATGCAAAATCAGAATCCAGCACCAAAGGCCCAAAGCAAGATTACTGGATGTGGAAATAGTACATGAAGCAACATATACAGCTCGCATACATCCAT
More
|
||||||||||
| CDS seq | ATGGATGTATGCGAGCTGTCTGGTGAAACTGTGAGTCGGTACTTCAATAAAGTATTATATGCAATCGGGCATCTTGGACCAGAAATGCTTAGGCATCGCACGCATGATACGCCATCAAAGATTTTGGGCAACCAAAGGTTTGATCCTTATTTTAAGGACTGCATTGGTGCCATTGATGGGACCCATGTTCCATGCAATGTTCCATCTCGAATATCGGATAGATTCCGGGGTAGAAATGCTGGTTGGGAGGGTTCAGCACATGATTCAACAGTACTGAGACACTCTCTTGAGCATCCTAATGGCCTACGAGTCCCTGAAGGGAAGTACTATCTTGCGGATGCTGGCAATATGGCAGGGAACAATGTGGTTTGGCAGCCCCAGGTTGTTGAGGAAATGTTGCGATACTACAAGGAGAAGATACTGGCTGATGGAAGACAACTTGTATTTAAAGAAGTCCATCATGAGGAATGTGCAAAGCAAATTAATGGCAAGTATCACACAAACTTCACAAGTCGACAAGTTTATCACAAGTTTCACAAGTTGAAGGCTCAGTGGAAGGTGATTATGGAGGCAAAGAATTTGAGCGGGGCCAATTTTGATGACGTTGAGAAAAAAATCCTATATGATGAGACTGAAGTTGTTCGAATGACTAATGCCAAAGATAAAAGGGCTAAATTCATTAACGTCCCCATACGTTGGTATGATGAAATGGAGTTTATTTTTCAAGACAAGCATGCAACAGGGGAATTTAATGTTCTGCAAACACCATATGACCGTCCAATGGAAGATGATGATTTTATTGGTGATAAAAATGGCAGTCCTGGTGATGTTGACCCTTCATCAAATTATGACTCAGGTTGTCTTCCAGATCAAGAGAACAGTACTGGAAGTAGCTCATCTTCTAGGCGTGCAAAAGGTAGAAAAACTGATAAAGGTAAAAGAGTTAGAGCTGATGATAATGTGGTTTATGAGATAACAGGGGCTATGGATAATATGTCTGAAACCATGCGTTTCACACATATGACATATCCAAATGAATCCCTATTCAAGATAATTGATGAGATGACGGAATACCCTGTCATGGTTCGACTTGAGCTGCAGACTTACCTCGCGACCCATGAAAATATAGCTGCCATGTTGAAGGGTAGACCACTGGATTCTATTAAGGAATATGTGGCCCAATGGATAATACAAAACTATCCAGCTGCTATGTAA
More
|
||||||||||
| Protein seq | MDVCELSGETVSRYFNKVLYAIGHLGPEMLRHRTHDTPSKILGNQRFDPYFKDCIGAIDGTHVPCNVPSRISDRFRGRNAGWEGSAHDSTVLRHSLEHPNGLRVPEGKYYLADAGNMAGNNVVWQPQVVEEMLRYYKEKILADGRQLVFKEVHHEECAKQINGKYHTNFTSRQVYHKFHKLKAQWKVIMEAKNLSGANFDDVEKKILYDETEVVRMTNAKDKRAKFINVPIRWYDEMEFIFQDKHATGEFNVLQTPYDRPMEDDDFIGDKNGSPGDVDPSSNYDSGCLPDQENSTGSSSSSRRAKGRKTDKGKRVRADDNVVYEITGAMDNMSETMRFTHMTYPNESLFKIIDEMTEYPVMVRLELQTYLATHENIAAMLKGRPLDSIKEYVAQWIIQNYPAAM |
||||||||||
| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsMH63_12G0231400 | OsMH63_12T0231400.1 | Chr12 | 15975058 | 15978083 | - | maker | ||
| CDS seq | ATGGATGTATGCGAGCTGTCTGGTGAAACTGTGAGTCGGTACTTCAATAAAGTATTATATGCAATCGGGCATCTTGGACCAGAAATGCTTAGGCATCGCACGCATGATACGCCATCAAAGATTTTGGGCAACCAAAGGTTTGATCCTTATTTTAAGGACTGCATTGGTGCCATTGATGGGACCCATGTTCCATGCAATGTTCCATCTCGAATATCGGATAGATTCCGGGGTAGAAATGCTGGTTGGGAGGGTTCAGCACATGATTCAACAGTACTGAGACACTCTCTTGAGCATCCTAATGGCCTACGAGTCCCTGAAGGGAAGTACTATCTTGCGGATGCTGGCAATATGGCAGGGAACAATGTGGTTTGGCAGCCCCAGGTTGTTGAGGAAATGTTGCGATACTACAAGGAGAAGATACTGGCTGATGGAAGACAACTTGTATTTAAAGAAGTCCATCATGAGGAATGTGCAAAGCAAATTAATGGCAAGTATCACACAAACTTCACAAGTCGACAAGTTTATCACAAGTTTCACAAGTTGAAGGCTCAGTGGAAGGTGATTATGGAGGCAAAGAATTTGAGCGGGGCCAATTTTGATGACGTTGAGAAAAAAATCCTATATGATGAGACTGAAGTTGTTCGAATGACTAATGCCAAAGATAAAAGGGCTAAATTCATTAACGTCCCCATACGTTGGTATGATGAAATGGAGTTTATTTTTCAAGACAAGCATGCAACAGGGGAATTTAATGTTCTGCAAACACCATATGACCGTCCAATGGAAGATGATGATTTTATTGGTGATAAAAATGGCAGTCCTGGTGATGTTGACCCTTCATCAAATTATGACTCAGGTTGTCTTCCAGATCAAGAGAACAGTACTGGAAGTAGCTCATCTTCTAGGCGTGCAAAAGGTAGAAAAACTGATAAAGGTAAAAGAGTTAGAGCTGATGATAATGTGGTTTATGAGATAACAGGGGCTATGGATAATATGTCTGAAACCATGCGTTTCACACATATGACATATCCAAATGAATCCCTATTCAAGATAATTGATGAGATGACGGAATACCCTGTCATGGTTCGACTTGAGCTGCAGACTTACCTCGCGACCCATGAAAATATAGCTGCCATGTTGAAGGGTAGACCACTGGATTCTATTAAGGAATATGTGGCCCAATGGATAATACAAAACTATCCAGCTGCTATGTAA
More
|
|||||||
| Protein seq | MDVCELSGETVSRYFNKVLYAIGHLGPEMLRHRTHDTPSKILGNQRFDPYFKDCIGAIDGTHVPCNVPSRISDRFRGRNAGWEGSAHDSTVLRHSLEHPNGLRVPEGKYYLADAGNMAGNNVVWQPQVVEEMLRYYKEKILADGRQLVFKEVHHEECAKQINGKYHTNFTSRQVYHKFHKLKAQWKVIMEAKNLSGANFDDVEKKILYDETEVVRMTNAKDKRAKFINVPIRWYDEMEFIFQDKHATGEFNVLQTPYDRPMEDDDFIGDKNGSPGDVDPSSNYDSGCLPDQENSTGSSSSSRRAKGRKTDKGKRVRADDNVVYEITGAMDNMSETMRFTHMTYPNESLFKIIDEMTEYPVMVRLELQTYLATHENIAAMLKGRPLDSIKEYVAQWIIQNYPAAM
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0 | 0 | 0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0500800 | SBH | 2.244841 | 1.470234 | 5.042561 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g31660 | SBH | 1.117434 | 1.631231 | 0.686350 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0500800 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0012630 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_09g0006480 | SBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0007690 | SBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0012430 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0012130 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0229900 | RBH | 0 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0012330 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0254500 | RBH | 0 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0012190 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0012550 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0012410 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0012360 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0012570 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G013170 | RBH | 0.0 | 0.0 | 0.197501 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0012140 | RBH | 0.0 | 0.0 | 0.0 |
