Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os12g31660 | OGI:07002380 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr12:19069751-19072449 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATCATGAAAACACACAAGTCATTTATTACATCACATTTCATTACATATCATGCTAGATTAGAATGATCATGAACATAATCATTCCACATCGCCATTGCAATATTGTCCCTAATAACATTTCCTTGATGAGTTTGATTATTCAGTGAGTTGACATCATTGCCATACTCATCACCTCCCGCTGGAACATCAACAAAATCTTCAGGTGATATATGGTGTGGATCATGTGGCTGATGATCAAGATCCAACCATCCCTCATTCCCATTGTACCTCCTAATCAGGTTGTGAAATACGGCAGCAGCTGCTGGTATCCTAACTTGGTTTTCAATAGGGTGTAGTGTGCCTACTTTTAAGATCGGGAAGCGCTTCTTCAAAACTCCAATAGCCCTTTCTATGTGATTACGCAATAATGCATGGCTTTGATTGAACAATTATTTGTAGTTTGATGGGCGCCGGTGACCACGACCAAACTCCTTAAGATGGTATCGAACGCCACGGTAAGGTGCGAGGAATGAAGGCGTGTTGGCATATCCACCATCAACAAGGTAAAACTTGCCCATCGGTATGCGAAAACCATTTAGTTGAGCAGACCTAAGCACCCGGGCATCCGTGGCAGATCCCTCCCAGCCACAAGAAATGAATGTGAAGTTTAAGTCAAAATCACATGCTAACATCACATTTTGGCTTAGTGTGCTCTTTCTATTCCTATATGGAGCTGCCATCTCAGGGTTTATAGTGATAGGAACATGAGTACCATCAATTGCTCCTAAGCAATTCTGCAAGAATAATATAAACACATAAGAAGATTTAATTTTAGAAATAAAATATTTTATTATACATGAATGCCAAGTTAGTATTGCACCTTGAAGTATGGGTAGAAGCGAGGATTTGATGTGATCTTTGAATGAGTTTGGTTTGCAAGAGGCGGCTTAATGAATCTATGGGTGAGAGTAGGGACTATATCGAAAAATGCCCTAATATGTAGGTGGATTGTCGCCCCACTATGCTTGAATTCATATTGCATATCTTGGTAGCTCGCATTATGGGATAGCATATACATGAACATAGCAAGCTTTTCCTCCACTCTAACTCCCCTAGTGTCACGGACCAAGTTCTTCCTTCTTAGAAATTCTGCAGTACTTTTGAAGACCTCCGGTTCCATACGGTACGCCACAAGGCAATTCATGACATGCCCTTCAAGTACCTCTGTCACTTTTTCTGCACCAGTCTGGGTTGATGCATGCCTAGGTGTTTTCTCTCTCCCCCACCACCACTATCCAAAAGATGCACAGCAGGGAAAAGGAAAAGAATCATATCATCATCCTCTTCCTCCCGCTTCCGACGTTTAGCCCTTGAATCCATTTTAATTCCAGGAACTGTTGACATGTGTGAGATGACTTCTAAGCACATAAAAGTGTGATATCAAGCAAACAAATGTTAACAAAAAAAAGAATCTTCTAAGCACCAAACTACAAAAAATTAACAGATAACAGAAGGTTGCAGTTAATGTCAAAGGTAGTAATGGCTATTCTGTACTTCTATAGATTAGATTACAAAGCATAAAAAAGATAAACAGCAGAGCATATCTTTGATAAACAACAGAGCTTTCTTCTATTTTACATTTGAAGGACTAATAGTGCAATTCCGTCGATTCAGAGAATGACTTAATTCCATGTGGTAATGTGAGTGTTAATTTCCATTCTGCAAGGCTAAATAAAGATTTTTCTCTAATTTCTATGTGTATATTGACCTGATTAACTATATATCCAGAGAATGAAAGAAAAATGCAGCATACTGTCAGTTACTACGTTGAAGTGTAACCTTCAACAGAAATATAATAAATGAACAGATGCATGTTCTTTCAGAAATCCATAGCAATGAACCACAAAAATATCTGTTCGGAAATAAAGGGACAAAACCTGATTACTCTCCTTTCAATATATCTTGATCAACATAAAAGGAAAGGAAGAAAATATTTTCCTTCGAATGAACATTATGTCAGACATCTAGAATTTGTTACTATCATCTCCCATAGTAAATTACCCATTTTAATTCCAGGAATTGACAAAGCAAGTTTGGGTGCTTCACAGGATCATGAAGAATTCTAATTAATACACAAACCGTATCAAGTTTGTTAGGGCAAAAATTAAGAGTATATCATGGATCAACAGAGATGCTCAAGCTTTATCCACACGAGCATCAGGAATTAATACACAGAGCCACAACTTATACAGAGCTGCACAGATTATGCCTAGAGATTTCACAAGTAAAATTAGCACAAGATTACCTAGCCCAAGATTAACTATCCGCAACATAATCGATCAGATCTAGCCCAAGATTTCACCTTCCCAACCACCAAACCAATCAATTCAGGAGAAGGATGGAATTTGGCATACCTAGACAAGCTGGTAGAAGATGACGACGAGGTCCTGGAGGTTCTTGTTGGGGACGAGGTCCTGGATGGTGGAGACCGAACGGAGAAGGCCACACCGTTGTTGAACTCCGGCAGATCTGACGAGAGGCGGCGTCGTTTCCGGCGAGAGGAGGAGGCCAAAGTGACGGCAGGCGCCGGCGCGAGTAGATGCGCGGCCCACCGCCGGCACGCGATGGGATGAGCAGCGGCGGCGCGGGCGTGGCCCACCGCGGCGCGCGTCTGGACGAGCAGCGGCGGCGCGGGCGCCGCTCCAGTCGAGAAGAGGCAG
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| CDS seq | ATGAATTGCCTTGTGGCGTACCGTATGGAACCGGAGGTCTTCAAAAGTACTGCAGAATTTCTAAGAAGGAAGAACTTGGTCCGTGACACTAGGGGAGTTAGAGTGGAGGAAAAGCTTGCTATGTTCATGTATATGCTATCCCATAATGCGAGCTACCAAGATATGCAATATGAATTCAAGCATAGTGGGGCGACAATCCACCTACATATTAGGGCATTTTTCGATATAGTCCCTACTCTCACCCATAGATTCATTAAGCCGCCTCTTGCAAACCAAACTCATTCAAAGATCACATCAAATCCTCGCTTCTACCCATACTTCAAGAATTGCTTAGGAGCAATTGATGGTACTCATGTTCCTATCACTATAAACCCTGAGATGGCAGCTCCATATAGGAATAGAAAGAGCACACTAAGCCAAAATGTGATGTTAGCATGTGATTTTGACTTAAACTTCACATTCATTTCTTGTGGCTGGGAGGGATCTGCCACGGATGCCCGGGTGCTTAGGTCTGCTCAACTAAATGGTTTTCGCATACCGATGGGCAAGTTTTACCTTGTTGATGGTGGATATGCCAACACGCCTTCATTCCTCGCACCTTACCGTGGCGTTCGATACCATCTTAAGGAGTTTGGTCGTGGTCACCGGCGCCCATCAAACTACAAATAA
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| Protein seq | MNCLVAYRMEPEVFKSTAEFLRRKNLVRDTRGVRVEEKLAMFMYMLSHNASYQDMQYEFKHSGATIHLHIRAFFDIVPTLTHRFIKPPLANQTHSKITSNPRFYPYFKNCLGAIDGTHVPITINPEMAAPYRNRKSTLSQNVMLACDFDLNFTFISCGWEGSATDARVLRSAQLNGFRIPMGKFYLVDGGYANTPSFLAPYRGVRYHLKEFGRGHRRPSNYK |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os12g31660 | LOC_Os12g31660.1 | Chr12 | 19069751 | 19072449 | - | MSU_osa1r7 | ||
| CDS seq | ATGAATTGCCTTGTGGCGTACCGTATGGAACCGGAGGTCTTCAAAAGTACTGCAGAATTTCTAAGAAGGAAGAACTTGGTCCGTGACACTAGGGGAGTTAGAGTGGAGGAAAAGCTTGCTATGTTCATGTATATGCTATCCCATAATGCGAGCTACCAAGATATGCAATATGAATTCAAGCATAGTGGGGCGACAATCCACCTACATATTAGGGCATTTTTCGATATAGTCCCTACTCTCACCCATAGATTCATTAAGCCGCCTCTTGCAAACCAAACTCATTCAAAGATCACATCAAATCCTCGCTTCTACCCATACTTCAAGAATTGCTTAGGAGCAATTGATGGTACTCATGTTCCTATCACTATAAACCCTGAGATGGCAGCTCCATATAGGAATAGAAAGAGCACACTAAGCCAAAATGTGATGTTAGCATGTGATTTTGACTTAAACTTCACATTCATTTCTTGTGGCTGGGAGGGATCTGCCACGGATGCCCGGGTGCTTAGGTCTGCTCAACTAAATGGTTTTCGCATACCGATGGGCAAGTTTTACCTTGTTGATGGTGGATATGCCAACACGCCTTCATTCCTCGCACCTTACCGTGGCGTTCGATACCATCTTAAGGAGTTTGGTCGTGGTCACCGGCGCCCATCAAACTACAAATAA
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| Protein seq | MNCLVAYRMEPEVFKSTAEFLRRKNLVRDTRGVRVEEKLAMFMYMLSHNASYQDMQYEFKHSGATIHLHIRAFFDIVPTLTHRFIKPPLANQTHSKITSNPRFYPYFKNCLGAIDGTHVPITINPEMAAPYRNRKSTLSQNVMLACDFDLNFTFISCGWEGSATDARVLRSAQLNGFRIPMGKFYLVDGGYANTPSFLAPYRGVRYHLKEFGRGHRRPSNYK
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.117434 | 1.631231 | 0.686350 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0500800 | RBH | 2.244841 | 1.470234 | 5.042561 |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0500800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0015040 | SBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0015180 | SBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0015080 | SBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0014890 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0257800 | RBH | 2.631697 | 12.1163335 | 13.5896915 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0014610 | SBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0282200 | RBH | 1.2042185 | 0.166327 | 2.7485095 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0014840 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
