Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsCMeo_01g0007690 | OGI:01018740 | 14/16 | CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | Chr01:6165870-6167037 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ttacatagcagctggatagttttgtattatccattgggccacatattccttaatagaatccaatggcctacccttcaacatggcagctatattctcatgggtcgcgagataagtttgcagctcaagtcgaaccatgacagggtattccgtcatctcatcaattatcttgaatagggattcatttggatgtgtcatatgtgtgaaacacatggtttcagacatattatccatagcccctgttatctcataaaccacattatcatcagttctaactcttttacctttatcagattttctaccttttgcacgcctagaagatgagctacttccagtattattctcttgatctggaagacaatctgagtcataatttgatgaagggtcaacatcactaggactgccatttttatcaccaataaaatcatcatcttcagtcattggatggtcatatggtgtttgcagaacattaaattcccctgttgcatgcttgtcttgaaaaataaactccatttcatcataccaacgtatggggacgttaatgaatttagcccttttatctttggcctacacatgacaagaaaaatgtcagaaacatagacatccatattatatgtaaacacgatagttatttgcaaggaaagaatagttagaacactcacattagtcattcgaacaacttcagtctcatcatataggattttttttctcaacatcgtcaaagttggccccgctcaaattctttgcctccataatcaccttccactgagccttcaacttgtgataaacttgtcgacttgtgaagtttgtgtgatacttgccattaatttgctttgcacattcctcacgatagacttctttaaatacaagttgtcttccatcatgcttggtgccgacggccagaaagttcctagctactactgcccataccatcgacaatctccattaatgcaaaatcagaatccagcaccaaaggcccaaagcaagattactggatgtggaaatagtacatgaagcaacatagacagctcgtatacatccatccatggcaggaagatggagagatttaatataagaaaaaagtcctcgtacctgcaaatctagatagacgaggcaccatcggcggaagaaatcaaatttgggagcttctcagttctcaccacgagcaatc
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| CDS seq | atggtgcctcgtctatctagatttgcagtagtagctaggaactttctggccgtcggcaccaagcatgatggaagacaacttgtatttaaagaagtctatcgtgaggaatgtgcaaagcaaattaatggcaagtatcacacaaacttcacaagtcgacaagtttatcacaagttgaaggctcagtggaaggccaaagataaaagggctaaattcattaacgtccccatacgttggtatgatgaaatggagtttatttttcaagacaagcatgcaacaggggaatttaatgttctgcaaacaccatatgaccatccaatgactgaagatgatgattttattggtgataaaaatggcagtcctagtgatgttgacccttcatcaaattatgactcagattgtcttccagatcaagagaataatactggaagtagctcatcttctaggcgtgcaaaaggtagaaaatctgataaaggtaaaagagttagaactgatgataatgtggtttatgagataacaggggctatggataatatgtctgaaaccatgtgtttcacacatatgacacatccaaatgaatccctattcaagataattgatgagatgacggaataccctgtcatggttcgacttgagctgcaaacttatctcgcgacccatgagaatatagctgccatgttgaagggtaggccattggattctattaaggaatatgtggcccaatggataatacaaaactatccagctgctatgtaa
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| Protein seq | MVPRLSRFAVVARNFLAVGTKHDGRQLVFKEVYREECAKQINGKYHTNFTSRQVYHKLKAQWKAKDKRAKFINVPIRWYDEMEFIFQDKHATGEFNVLQTPYDHPMTEDDDFIGDKNGSPSDVDPSSNYDSDCLPDQENNTGSSSSSRRAKGRKSDKGKRVRTDDNVVYEITGAMDNMSETMCFTHMTHPNESLFKIIDEMTEYPVMVRLELQTYLATHENIAAMLKGRPLDSIKEYVAQWIIQNYPAAM |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_01g0007690 | OsCMeo_01g0007690.01 | Chr01 | 6165870 | 6167037 | - | NAM | ||
| CDS seq | atggtgcctcgtctatctagatttgcagtagtagctaggaactttctggccgtcggcaccaagcatgatggaagacaacttgtatttaaagaagtctatcgtgaggaatgtgcaaagcaaattaatggcaagtatcacacaaacttcacaagtcgacaagtttatcacaagttgaaggctcagtggaaggccaaagataaaagggctaaattcattaacgtccccatacgttggtatgatgaaatggagtttatttttcaagacaagcatgcaacaggggaatttaatgttctgcaaacaccatatgaccatccaatgactgaagatgatgattttattggtgataaaaatggcagtcctagtgatgttgacccttcatcaaattatgactcagattgtcttccagatcaagagaataatactggaagtagctcatcttctaggcgtgcaaaaggtagaaaatctgataaaggtaaaagagttagaactgatgataatgtggtttatgagataacaggggctatggataatatgtctgaaaccatgtgtttcacacatatgacacatccaaatgaatccctattcaagataattgatgagatgacggaataccctgtcatggttcgacttgagctgcaaacttatctcgcgacccatgagaatatagctgccatgttgaagggtaggccattggattctattaaggaatatgtggcccaatggataatacaaaactatccagctgctatgtaa
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| Protein seq | MVPRLSRFAVVARNFLAVGTKHDGRQLVFKEVYREECAKQINGKYHTNFTSRQVYHKLKAQWKAKDKRAKFINVPIRWYDEMEFIFQDKHATGEFNVLQTPYDHPMTEDDDFIGDKNGSPSDVDPSSNYDSDCLPDQENNTGSSSSSRRAKGRKSDKGKRVRTDDNVVYEITGAMDNMSETMCFTHMTHPNESLFKIIDEMTEYPVMVRLELQTYLATHENIAAMLKGRPLDSIKEYVAQWIIQNYPAAM
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_08g0496700 | SBH | 0.000000 | 0.0 | 0.671978 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g10770 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os08g0496700 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0007720 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0007360 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_10g0010310 | SBH | 0.0 | 0.0 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0007210 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0007360 | RBH | 0.0 | 0.0 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0094400 | RBH | 0 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0007270 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_10G0262200 | SBH | 0.3992655 | 0.4516215 | 1.753582 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0007130 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0007320 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0007320 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_Ung0020710 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0007240 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G007330 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0007140 | RBH | 0.0 | 0.0 | 0.0 |
