Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsMH63_12G0084100 | OGI:12014740 | 16/16 | Minghui 63 | MH63RS3 | HZAU | Chr12:5237126-5239638 | ||||||||
| Gene Symbol | MSL41, OsMSL41 | ||||||||||
| DNA seq | ATGGCTTTTAATTTCGACTGGAGCCGGAGCCGAAGCCGGAGCCGCTGTTCCCATACGGCTCGGCTCCACCGCCCAGCTCCGCAGAAGCCACGCGGAAGCCGGAGCCCATTTGTGCCCCAGCTTCTCCTGCTCCAGGAGCCCAATTCGGCCCAGCTCCACCACCGCTCCTCCCGACCTAGCGCCGCCGCCGCCGCCGCCCTGCACCGTCTGCCCGCCGGCCGCCTCCACCCGCACCGCGCGGTGCCCCCCTCATCACCAAGAACGGAAGGTATCCATCCATCCATCCATCTATTATTCGTCCCGCACATGAATTCCCCCCTTTATTTTCTGAGAGGCACACCCTAAATTTCCAGCAGCAGGAACAAAATTATCATACTTGATTTCTTGCAAAGAAAGAATGATGGATTAATTCGTCTTTGTGCTTGATGCTTCTTGCTTGTAGTGGTGGTAGCTAGTAGGCTAGAATTGTTGTTTGAGTTTCGTGCCATCATCATGTTTAGGGGGTGTGTGTGTAGCAGATTGAAGTGGTTCTTGGTTCCTATTCCCAACAGGTCCAAGTGATGAGCCTACTAAAGGGGAGCATTTCAGAATTTCCTTTTGGATTTTTGTTTCACTTGTTACTTTTCTCATGTGTATGGTTTTGCTTACTTATATGCTGCTTTGCGCGATTATTGTGCATTTGAATGGAGGTTTACCTTTGGACTTGATAGAGATCGGATTATGGTATCAAAAGAAATGAAGTTCTAGTTATTGTTCTCAATTGATCTGAACAGGACATATCAGAATTTTTTTAGTTACAGTTGTTTGATTCTTCTTTCCTTTGGTTTCAAGAGTGTACATGTTTGAAAACATAGCCTAGAAAGACCTTCCATCTCTGCAACCTTTCTTGTTTTCGTAGTTCAGGGTGAAACCTGAAATATCTTTGTATGGTAGTGTTGTCTTGGGACAATCTTTTGAGAGTATATGACCATCAGTTCATGGATTTAATCTCTGTTTTGGTGTCGAGTTCCACCACTTCTTGCTTATACACAAATAGTTCATCATGACTGTATGATGCTAAATTGCAGACTCTAATCTATTTTATTAGTGCAGATGACAGAAGCTGCTGAGTGGAATGATGAGAACACTAAAATTATCTGTGAACTTTATGCTGAACAAGTTCGGGCTGGAAATCGACCAAGTACTCATCTCAACAGCATTGGATACAGCCAAGTTGCATCGAAGTTTCAGCAGAGAACTCATTTGCTTTACACCAAGAGACAATTTAAAAACAAATGGGATAAACTTAGGAATGAGTACACCATCTGGAAGAAATTGCTTATAAGAGGGTCAGGTTTAGGTTGGGACAGTACAAAAGGAACAATTGCAGCTGACGAAAACTGGTGGAACAAGACAAATACAGTATGCAATAGTTGCGCTTTCTCGATATCTTCTTACCATGTGAACTATGCTATCAGTTGATACCTTTTTTTTTACAGGAGTTGCCAGGTGCAAAAAAATTCCGCAAAGCTGGAATGAAAAATCTGGATCATTTGAGAGTGATGTTTGATGATATTGCCAGTAACGGTGTGGATCATACACCGGTGCCAGCAACAAGTTCGCCATCTACTCCGGAAAGTCCTGTAAATGTTGCTAATCTTGACGGACTAGACAATGGCATGGAAGATAATGATGACACTCAGCTGGAAGAGGAGTCTCCCTCGAATCGGAACAAGAAAAGACCTCGCCATGCTAATAATGCTAACAAGAACAAGAGTAGTAGGACTGAAATTGCTTTGCTCATGCAAGCTCAATTGAAGGGTATGGCAGATTTGGCCGAGAAAGCACAGGCCACTTTTGAGAATTTCACCTCCCTTGTTGGCTCTCTAGGATCCAGCATTCAGTATGTTATGACATTGGTTCAAGAATGTGGAGCACGGAGTGGAAGCGACGAGCATTTCATTGCAACTGAGTTGTTTGTCAGTAGAGAACAAAGAGAAATGTTCTTGACTCTGAGTACCGCTGTGGAGCGTCTAGAATGGCTTAGAAGAAAGTATAAAGCTAAGTATGGTGCTTAAGAAATATGATCGCGGAGCTTCCTGACATCGTTTCACTTAGCTCTTGTTGCCTTAGGTATTCAAGACTATTTTTCTTTTCTTTTGTATCGGATGCTAGCATGTATTAGATCCTGACAAGTGTGGTCGTCAACCTGTGGGTGTAAAGGCTGATCTATGAATGTACAATCATCGTTTAGCATTAGCTGTTTATTTCTTGCTCATTTTGAATTTAATGCTGTCAAATGTGAGATCATATATGCTTCTGACGAAGGGATTCCTAACCAGTTTGAGACTGTAATCACATCCATTTTTTGTCCCAAATTTCTTTCAGATTTTCTGGAATCTTTCAGCTTCAAACAAAATTCAGTAGCAAATATGATTCAGAAGAGCATGGGTACCAGGTTCACTGTAGGAAAACCTGTTACAGGTGGCAACAAGGCTGATCGGAATTCATAACCCTGAATCAAACCTGTCTGA
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| CDS seq | ATGGCTTTTAATTTCGACTGGAGCCGGAGCCGAAGCCGGAGCCGCTGTTCCCATACGGCTCGGCTCCACCGCCCAGCTCCGCAGAAGCCACGCGGAAGCCGGAGCCCATTTGTGCCCCAGCTTCTCCTGCTCCAGGAGCCCAATTCGGCCCAGCTCCACCACCGCTCCTCCCGACCTAGCGCCGCCGCCGCCGCCGCCCTGCACCGTCTGCCCGCCGGCCGCCTCCACCCGCACCGCGCGGTGCCCCCCTCATCACCAAGAACGGAAGTGCAGATGACAGAAGCTGCTGAGTGGAATGATGAGAACACTAAAATTATCTGTGAACTTTATGCTGAACAAGTTCGGGCTGGAAATCGACCAAGTACTCATCTCAACAGCATTGGATACAGCCAAGTTGCATCGAAGTTTCAGCAGAGAACTCATTTGCTTTACACCAAGAGACAATTTAAAAACAAATGGGATAAACTTAGGAATGAGTACACCATCTGGAAGAAATTGCTTATAAGAGGGTCAGGTTTAGGTTGGGACAGTACAAAAGGAACAATTGCAGCTGACGAAAACTGGTGGAACAAGACAAATACAGAGTTGCCAGGTGCAAAAAAATTCCGCAAAGCTGGAATGAAAAATCTGGATCATTTGAGAGTGATGTTTGATGATATTGCCAGTAACGGTGTGGATCATACACCGGTGCCAGCAACAAGTTCGCCATCTACTCCGGAAAGTCCTGTAAATGTTGCTAATCTTGACGGACTAGACAATGGCATGGAAGATAATGATGACACTCAGCTGGAAGAGGAGTCTCCCTCGAATCGGAACAAGAAAAGACCTCGCCATGCTAATAATGCTAACAAGAACAAGAGTAGTAGGACTGAAATTGCTTTGCTCATGCAAGCTCAATTGAAGGGTATGGCAGATTTGGCCGAGAAAGCACAGGCCACTTTTGAGAATTTCACCTCCCTTGTTGGCTCTCTAGGATCCAGCATTCAGTATGTTATGACATTGGTTCAAGAATGTGGAGCACGGAGTGGAAGCGACGAGCATTTCATTGCAACTGAGTTGTTTGTCAGTAGAGAACAAAGAGAAATGTTCTTGACTCTGAGTACCGCTGTGGAGCGTCTAGAATGGCTTAGAAGAAAGTATAAAGCTAAGTATGGTGCTTAA
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| Protein seq | MAFNFDWSRSRSRSRCSHTARLHRPAPQKPRGSRSPFVPQLLLLQEPNSAQLHHRSSRPSAAAAAALHRLPAGRLHPHRAVPPSSPRTEVQMTEAAEWNDENTKIICELYAEQVRAGNRPSTHLNSIGYSQVASKFQQRTHLLYTKRQFKNKWDKLRNEYTIWKKLLIRGSGLGWDSTKGTIAADENWWNKTNTELPGAKKFRKAGMKNLDHLRVMFDDIASNGVDHTPVPATSSPSTPESPVNVANLDGLDNGMEDNDDTQLEEESPSNRNKKRPRHANNANKNKSSRTEIALLMQAQLKGMADLAEKAQATFENFTSLVGSLGSSIQYVMTLVQECGARSGSDEHFIATELFVSREQREMFLTLSTAVERLEWLRRKYKAKYGA |
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| Function | L10-interacting MYB domain-containing protein [UniProtKB/Swiss-Prot:Q9FFJ8] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsMH63_12G0084100 | OsMH63_12T0084100-mRNA-1 | Chr12 | 5237126 | 5239638 | + | maker | ||
| CDS seq | ATGGCTTTTAATTTCGACTGGAGCCGGAGCCGAAGCCGGAGCCGCTGTTCCCATACGGCTCGGCTCCACCGCCCAGCTCCGCAGAAGCCACGCGGAAGCCGGAGCCCATTTGTGCCCCAGCTTCTCCTGCTCCAGGAGCCCAATTCGGCCCAGCTCCACCACCGCTCCTCCCGACCTAGCGCCGCCGCCGCCGCCGCCCTGCACCGTCTGCCCGCCGGCCGCCTCCACCCGCACCGCGCGGTGCCCCCCTCATCACCAAGAACGGAAGTGCAGATGACAGAAGCTGCTGAGTGGAATGATGAGAACACTAAAATTATCTGTGAACTTTATGCTGAACAAGTTCGGGCTGGAAATCGACCAAGTACTCATCTCAACAGCATTGGATACAGCCAAGTTGCATCGAAGTTTCAGCAGAGAACTCATTTGCTTTACACCAAGAGACAATTTAAAAACAAATGGGATAAACTTAGGAATGAGTACACCATCTGGAAGAAATTGCTTATAAGAGGGTCAGGTTTAGGTTGGGACAGTACAAAAGGAACAATTGCAGCTGACGAAAACTGGTGGAACAAGACAAATACAGAGTTGCCAGGTGCAAAAAAATTCCGCAAAGCTGGAATGAAAAATCTGGATCATTTGAGAGTGATGTTTGATGATATTGCCAGTAACGGTGTGGATCATACACCGGTGCCAGCAACAAGTTCGCCATCTACTCCGGAAAGTCCTGTAAATGTTGCTAATCTTGACGGACTAGACAATGGCATGGAAGATAATGATGACACTCAGCTGGAAGAGGAGTCTCCCTCGAATCGGAACAAGAAAAGACCTCGCCATGCTAATAATGCTAACAAGAACAAGAGTAGTAGGACTGAAATTGCTTTGCTCATGCAAGCTCAATTGAAGGGTATGGCAGATTTGGCCGAGAAAGCACAGGCCACTTTTGAGAATTTCACCTCCCTTGTTGGCTCTCTAGGATCCAGCATTCAGTATGTTATGACATTGGTTCAAGAATGTGGAGCACGGAGTGGAAGCGACGAGCATTTCATTGCAACTGAGTTGTTTGTCAGTAGAGAACAAAGAGAAATGTTCTTGACTCTGAGTACCGCTGTGGAGCGTCTAGAATGGCTTAGAAGAAAGTATAAAGCTAAGTATGGTGCTTAA
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| Protein seq | MAFNFDWSRSRSRSRCSHTARLHRPAPQKPRGSRSPFVPQLLLLQEPNSAQLHHRSSRPSAAAAAALHRLPAGRLHPHRAVPPSSPRTEVQMTEAAEWNDENTKIICELYAEQVRAGNRPSTHLNSIGYSQVASKFQQRTHLLYTKRQFKNKWDKLRNEYTIWKKLLIRGSGLGWDSTKGTIAADENWWNKTNTELPGAKKFRKAGMKNLDHLRVMFDDIASNGVDHTPVPATSSPSTPESPVNVANLDGLDNGMEDNDDTQLEEESPSNRNKKRPRHANNANKNKSSRTEIALLMQAQLKGMADLAEKAQATFENFTSLVGSLGSSIQYVMTLVQECGARSGSDEHFIATELFVSREQREMFLTLSTAVERLEWLRRKYKAKYGA
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.77611 | 2.3140745 | 1.4825045 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0207200 | RBH | 0.153832 | 0.211287 | 0.503558 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g10550 | RBH | 0.100796 | 0.137693 | 0.125598 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0207200 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0006660 | RBH | 0.000000 | 0.0 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0006740 | RBH | 0.000000 | 0.0 | 0.305302 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0006740 | RBH | 0.754918 | 0.0 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0006640 | RBH | 0.000000 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0002670 | SBH | 0.0 | 0.0 | 0.587773 |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0002640 | SBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0089600 | RBH | 1.8967785 | 2.7245595 | 5.276227 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0002430 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0002650 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0002670 | SBH | 0.000000 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0002590 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G006500 | RBH | 0.000000 | 0.0 | 0.668839 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
