Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_12g0002590 | OGI:06027190 | 16/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr12:1860888-1864129 | ||||||||
| Gene Symbol | MSL41, OsMSL41, - | ||||||||||
| DNA seq | ataaagccgcaaatgtttagggactcacagaatgtaaaaattgttagcacactgagttctaaacataaataatggtttatttggaaaacatcgcacatcacaactcaaagtaaagtacagtgcacaaactactaggtgccaccagatgactgtccagtaccaccagtgcgtataaattccaagcgcctagcggcgtccttgagtcgaacaaagcatttgcaggtcaatgggtcacggaatagcgcacaagcagcataccacacacttcctccaatttcatggccatcattttccaccaactccatgcacgcatcaaggcccatagacttctctgcttccatctgagcaacacgactctggtagctctgctgtcggatgtccgcaatcctctccaaagccagtccagcggagtcgcttcgggacttcttggaagaactccctgaggcagtagtgtttgctgctggcctctttcccttgccccggtctgctgccgttgggggtggagttggaggtggtggtctataagcagcagcgagctgcgccatgtcgatggtctgccactgaactgctccttgcggtgcctgtggggctgcccctgcgacggcggagtggtttccgacaactgtgcgcccactgaataccgcgtggtgaaggtcaatgtgcttcagaggatcattcctgaagcttaagacacctttattttgctgcaacataagtagacagtaaaaataagttagtacaaggcaagtgcattaggcttgtgcaaacattgaacataatgaatatgtgcagtccaatgtgcattactactaaaatgctggcagtaaatgtgcacattggtaccaagttatcaaatataatcaggagtacatgttacaatgggccacacatctgacagaatgaaagaaatatagtttgaacattgtaaacataagataaactgcatatgttatattctttgtagatgagcacatttttgttcattctctctatatacatcacaaagaaggtgtgtacagctagttgaatatgtattaacatgttcctaaatgacttgtacaagatctttcctaatttactgatacactacatatagattttgtttatgcagagaacaaaacctataagcattaccatgttacattgactgctacattgcataagctaataaaatgctacattgtgtaagctatatccttcacaattaaacacatgtgaatctgttaaaatgcttttgaatgtcacatgtacaagatcatttacttctcgcaatcattgccaatcagttcatggtagacagtgtaaacatcattttgttaacttaaatacaagggaatggcacacattactaaaaacgacatgacagtaacaactatgaaacatatgtgagcacaatccttccattttactgcagctagtcatttgttggcacacacaatttgaacaaaaaaattattacacctcacaaaactgtatttataattgcatgcatgtactaaatttcagataataccaattgtaggcaaaattgttggttcaaaatatttatggtcaagtgtacgtaccgcattcttgctttcccaccactcattatcggcaacaatggctgatgtatggggatcacgacccagcccgcttgcatgcgattctagccacacccacctgttgtaccgcttcttacactgcccccaaatgtactccaattgagccttgttcaccttcttcttgcacttggtgtacatcttgtgtattaggttctgccatgcctgcggcttgggggagttggaggtgatggtgaacgctgccatctcctccaagcagctctcaagaaacacacgaacctccatatcggtccaccggctacggccatcgcccatctactccgtgcaagtcaaataaaattgaatcggaaatgaacaaattaatacaaaccaataccttagatgactcttcctcgcggacgacgtcccaatcaatcgaacggccgacggtggcagggctcactcttcgaacaaagtcgatgacggctctaggagacttggcgcaaaccttgcagagggcatgcgcgatatgaagcacgtcgtcgggagcagccttggcgctgccagcgtcggaggtgacagagtcggaggagtcctcgccggactccagatcggcgccgcggacagagatctcccctgtttgaggggattgaacaatcgtcccctcctcttggatcgacaatagatcccgctctcgcttccgcttcttcgctgtcgtctccatcggaccacgcacacgctcggcctgaaatagagctggctcctcaactccgccagcttggatgccttgatgacactcttcaggccagcactgtctgacccgagaggccgagaggacgagcacacaggcggccagactgccaaagatgggcggcctgatgggcgccgatgcttgctgcttcacagcgagcacgccggccagcttttactcccctcgaggacgacgcagacagctcgacaggcgtggagctcttccacttccccccgattttgagcaccttgaaccgaccgctgccgcaagacgacgcgcggacgagaatcgattGggggggcacgggcctgcaagccacagtcgaaaggggaggaggggggctggcgagaatcggggaggacgggagcctgcagcggaggggaatcgattctccgccaggcctgcgtcgcatcgacgaccgcggaagcaagagagcaacagcgagaggaggaagaaagagggatcgagagcattggatgccctgactctgacggaaaagccgaggcgcaacggcaacttctcacatccgttaacgccgttaacgtcgcctcacaagccgtccttctggtactgtgtgcgggaccacgcttccagtgcacggaacatgaaccggatcaggactcgcacatacgaacgaagccttagtgatatttgaagggcaatttgatctatccaacggctattgttagtcaactgcatgggatttagggaattgcagttgactgactttagcaaatacgaactgaaactccaacgaagaagcaaattaacttaattaataagttgagcagcctgtaggcctgtagttggttttggacatggacattccaaccacattactatatatcaacctataagttattggagcaaaatagtaatcctccattccagagagatttgataggacacaccattttatcggaagtgttaggtgcgaagaaggccaccat
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| CDS seq | atggtggccttcttcgcacctaacacttccgataaaatgagtcagggcatccaatgctctcgatccctctttcttcctcctctcgctgttgctctcttgcttccgcggtcgtcgatgcgacgcaggcctggcggagaatcgattcccctccgctgcaggctcccgtcctccccgattctcgccagcccccctcctcccctttcgactgtggcttgcaggcccgtgccccccCaatcgattctcgtccgcgcgtcgtcttgcggcagcggtcggttcaaggtgctcaaaatcggggggaagtggaagagctccacgcctgtcgagctgtctgcgtcgtcctcgaggggactggccggcgtgctcgctgtgaagcagcaagcatcggcgcccatcaggccgcccatctttggcagtctggccgcctgtgtgctcgtcctctcggcctctcgggtcagacagtgctggcctgaagagtgtcatcaaggcatccaagctggcggagttgaggagccagctctatttcaggccgagcgtgtgcgtggtccgatggagacgacagcgaagaagcggaagcgagagcgggatctattgtcgatccaagaggaggggacgattgttcaatcccctcaaacaggggagatctctgtccgcggcgccgatctggagtccggcgaggactcctccgactctgtcacctccgacgctggcagcgccaaggctgctcccgacgacgtgcttcatatcgcgcatgccctctgcaaggtttgcgccaagtctcctagagccgtcatcgactttgttcgaagagtgagccctgccaccgtcggccgttcgattgattgggacgtcgtccgcgaggaagagtcatctaagatgggcgatggccgtagccggtggaccgatatggaggttcgtgtgtttcttgagagctgcttggaggagatggcagcgttcaccatcacctccaactcccccaagccgcaggcatggcagaacctaatacacaagatgtacaccaagtgcaagaagaaggtgaacaaggctcaattggagtacatttgggggcagtgtaagaagcggtacaacaggtgggtgtggctagaatcgcatgcaagcgggctgggtcgtgatccccatacatcagccattgttgccgataatgagtggtgggaaagcaagaatgcgcaaaataaaggtgtcttaagcttcaggaatgatcctctgaagcacattgaccttcaccacgcggtattcagtgggcgcacagttgtcggaaaccactccgccgtcgcaggggcagccccacaggcaccgcaaggagcagttcagtggcagaccatcgacatggcgcagctcgctgctgcttatagaccaccacctccaactccacccccaacggcagcagaccggggcaagggaaagaggccagcagcaaacactactgcctcagggagttcttccaagaagtcccgaagcgactccgctggactggctttggagaggattgcggacatccgacagcagagctaccagagtcgtgttgctcagatggaagcagagaagtctatgggccttgatgcgtgcatggagttggtggaaaatgatggccatgaaattggaggaagtgtgtggtatgctgcttgtgcgctattccgtgacccattgacctgcaaatgctttgttcgactcaaggacgccgctaggcgcttggaatttatacgcactggtggtactggacagtcatctggtggcacctag
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| Protein seq | MVAFFAPNTSDKMSQGIQCSRSLFLPPLAVALLLPRSSMRRRPGGESIPLRCRLPSSPILASPPPPLSTVACRPVPPQSILVRASSCGSGRFKVLKIGGKWKSSTPVELSASSSRGLAGVLAVKQQASAPIRPPIFGSLAACVLVLSASRVRQCWPEECHQGIQAGGVEEPALFQAERVRGPMETTAKKRKRERDLLSIQEEGTIVQSPQTGEISVRGADLESGEDSSDSVTSDAGSAKAAPDDVLHIAHALCKVCAKSPRAVIDFVRRVSPATVGRSIDWDVVREEESSKMGDGRSRWTDMEVRVFLESCLEEMAAFTITSNSPKPQAWQNLIHKMYTKCKKKVNKAQLEYIWGQCKKRYNRWVWLESHASGLGRDPHTSAIVADNEWWESKNAQNKGVLSFRNDPLKHIDLHHAVFSGRTVVGNHSAVAGAAPQAPQGAVQWQTIDMAQLAAAYRPPPPTPPPTAADRGKGKRPAANTTASGSSSKKSRSDSAGLALERIADIRQQSYQSRVAQMEAEKSMGLDACMELVENDGHEIGGSVWYAACALFRDPLTCKCFVRLKDAARRLEFIRTGGTGQSSGGT |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_12g0002590 | OsLiXu_12g0002590.01 | Chr12 | 1860888 | 1864129 | - | NAM | ||
| CDS seq | atggtggccttcttcgcacctaacacttccgataaaatgagtcagggcatccaatgctctcgatccctctttcttcctcctctcgctgttgctctcttgcttccgcggtcgtcgatgcgacgcaggcctggcggagaatcgattcccctccgctgcaggctcccgtcctccccgattctcgccagcccccctcctcccctttcgactgtggcttgcaggcccgtgccccccCaatcgattctcgtccgcgcgtcgtcttgcggcagcggtcggttcaaggtgctcaaaatcggggggaagtggaagagctccacgcctgtcgagctgtctgcgtcgtcctcgaggggactggccggcgtgctcgctgtgaagcagcaagcatcggcgcccatcaggccgcccatctttggcagtctggccgcctgtgtgctcgtcctctcggcctctcgggtcagacagtgctggcctgaagagtgtcatcaaggcatccaagctggcggagttgaggagccagctctatttcaggccgagcgtgtgcgtggtccgatggagacgacagcgaagaagcggaagcgagagcgggatctattgtcgatccaagaggaggggacgattgttcaatcccctcaaacaggggagatctctgtccgcggcgccgatctggagtccggcgaggactcctccgactctgtcacctccgacgctggcagcgccaaggctgctcccgacgacgtgcttcatatcgcgcatgccctctgcaaggtttgcgccaagtctcctagagccgtcatcgactttgttcgaagagtgagccctgccaccgtcggccgttcgattgattgggacgtcgtccgcgaggaagagtcatctaagatgggcgatggccgtagccggtggaccgatatggaggttcgtgtgtttcttgagagctgcttggaggagatggcagcgttcaccatcacctccaactcccccaagccgcaggcatggcagaacctaatacacaagatgtacaccaagtgcaagaagaaggtgaacaaggctcaattggagtacatttgggggcagtgtaagaagcggtacaacaggtgggtgtggctagaatcgcatgcaagcgggctgggtcgtgatccccatacatcagccattgttgccgataatgagtggtgggaaagcaagaatgcgcaaaataaaggtgtcttaagcttcaggaatgatcctctgaagcacattgaccttcaccacgcggtattcagtgggcgcacagttgtcggaaaccactccgccgtcgcaggggcagccccacaggcaccgcaaggagcagttcagtggcagaccatcgacatggcgcagctcgctgctgcttatagaccaccacctccaactccacccccaacggcagcagaccggggcaagggaaagaggccagcagcaaacactactgcctcagggagttcttccaagaagtcccgaagcgactccgctggactggctttggagaggattgcggacatccgacagcagagctaccagagtcgtgttgctcagatggaagcagagaagtctatgggccttgatgcgtgcatggagttggtggaaaatgatggccatgaaattggaggaagtgtgtggtatgctgcttgtgcgctattccgtgacccattgacctgcaaatgctttgttcgactcaaggacgccgctaggcgcttggaatttatacgcactggtggtactggacagtcatctggtggcacctag
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| Protein seq | MVAFFAPNTSDKMSQGIQCSRSLFLPPLAVALLLPRSSMRRRPGGESIPLRCRLPSSPILASPPPPLSTVACRPVPPQSILVRASSCGSGRFKVLKIGGKWKSSTPVELSASSSRGLAGVLAVKQQASAPIRPPIFGSLAACVLVLSASRVRQCWPEECHQGIQAGGVEEPALFQAERVRGPMETTAKKRKRERDLLSIQEEGTIVQSPQTGEISVRGADLESGEDSSDSVTSDAGSAKAAPDDVLHIAHALCKVCAKSPRAVIDFVRRVSPATVGRSIDWDVVREEESSKMGDGRSRWTDMEVRVFLESCLEEMAAFTITSNSPKPQAWQNLIHKMYTKCKKKVNKAQLEYIWGQCKKRYNRWVWLESHASGLGRDPHTSAIVADNEWWESKNAQNKGVLSFRNDPLKHIDLHHAVFSGRTVVGNHSAVAGAAPQAPQGAVQWQTIDMAQLAAAYRPPPPTPPPTAADRGKGKRPAANTTASGSSSKKSRSDSAGLALERIADIRQQSYQSRVAQMEAEKSMGLDACMELVENDGHEIGGSVWYAACALFRDPLTCKCFVRLKDAARRLEFIRTGGTGQSSGGT
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0215100 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os10g14290 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0215100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0015670 | SBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0015090 | SBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0015490 | SBH | 0.074953 | 0.065806 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0002670 | RBH | 0.0 | 0.0 | 0.587773 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0030100 | RBH | 0 | 0.2161295 | 0.009132 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0002640 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0032100 | RBH | 0.011508 | 0.172885 | 0.062329 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0002430 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0002650 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0013200 | RBH | 0.000000 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_07g0010850 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_10g0001200 | SBH | 0.0 | 0.663489 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G002490 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0014680 | SBH | 0.0 | 0.0 | 0.0 |
