Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_07g0010850 | OGI:01040070 | 7/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr07:11333218-11337212 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atgctctcgatccctctttcttcctcctctcgctgttgcttccgcggtcgtcgatgcgacgcaggcctggcggataatccctctttcttcccctccgctgcaggctcccgtcctcccctttcgactgtggcttgcaggcccgtgccccccccccaatcgattctcgtccgcgcgtcgtcttgcggcagcggtcggttcaaggtgctcaaaatcggggggaagtggaagagctccacgcctgtcgagctgtctgcgtcgtcctcgaggggagtaaaagctggccggcgtgctcgctgtgaagcagcaagcatcggcgcccatcaggccgcccatctttggcagtctggctgcctgtgtgctcgtcctctctgcctctcgggtcagacagtgctggcctgaagagtctcatcaaggcatccaagctggcagagttgaggagtctctatttcaggccgagcgtgtgcgtggtccgatggagacgacagcgaagaagcggaagcgagagcgggatctattgtcgatccaagaggaggggacgattgttcaatcccctcaaacaggggagatctctgtccgcggcgccgatctggagtccggcgaggactcctccgactctgtcacctccgacgctggcagcgccaaggctgctcccgacgacgtgcttcatatcgcgcatgccctctgcaaggtttgcgccaagtctcctagagccgtcatcgactttgttcgaagagtgagccctgccaccgtcggccgttcgattgattgggacgtcgtccgcgaggaagagtcatctaaggtattggtttgtattaatttgttcatttccgattcaattttatttgacttgcacggagtagatgggcgatggccgtagccggtggaccgatatggaggttcgtgtgtttcttgagagctgcttggaggagatggcagcgttcaccatcacctccaactcccccaagccgcaggcatggcagaacctaatacacaagatgtacaccaagtgcaagaagaaggtgaacaaggctcaattggagtacatttgggggcagtgtaagaagcggtacaacaggtgggtgtggctagaatcgcatgcaagcgggctgggtcgtgatccccatacatcagccattgttgccgatgatgagtggtgggaaagcaagaatgcggtacgtacacttgaccataaatattttgaaccaacaattttgcctacaattggtattatctgaaatttagtacatgcatgcaattataaatacagttttgtgaggtgtaataatttttttgttcaaattgtgtgtgccaacaaatgactagctgcagtaaaatggaaggattgtgatcacatatgtttcatagttgttactgtcatgtcgtttttagtaatgtgtgccattcccttgtatttaagttaacaaaatgatgtttaggaaagatctatatgtagtgtatatgtagtgtatcagtaaattaggaaagatcttgtacaagtcatttaggaacatgttaatacatattcaactagctgtacacaccttctttgtgatgtatatagagagaatgaacaaaaatgtgctcatctacaaagaatataatatatgcagtttatcttatgtttacaatgttcaaactatctttctttcattctgtcagatgtgtggcccattgtaacatgtactcctgattatatttgataacttggtaccaatgtgcacatttactgccagcattttagtagtaatgcacattggactgcacatattcattatgttcaatgtttgcacaagcctaatgcacttgccttgtactaacttatttttactgtctacttatgttgcagcaaaataaaggtgtcttaagcttcaggaatgatcctctgaagcacattgaccttcaccacgcggtattcagtgggcacacagttgtcggaaaccactccgccgtcgcaggggcagccccacaggcaccgcaaggagcagttcagtggtagaccatcgacatggcgcagctcgctgctgcttatagaccaccacctccaactccacccccaacggcagcagaccggggcaagggaaagaggccagcagcaaacactactgccttagggagttcttccaagaagtcccgaagcgactccgctggactggctttggagaggattgcggacatccgagagcagagctaccagagtcgtgttgctcagatggaagcagagaagtctatgggccttgatgcgtgcatggagttggtggaaaatgatggccatgaaattggaggaagtgtgtggtatgctgcttgtgcgctattccgtgacccattgacctgcaaatgctttgttcgactcaaggacgccgctaggcgcttggaatttatacgcactggtggtactggacagtcatctggtggcacctagtagtttgtgcactgtactttactttgagttgtgatgggcgatgttttccaaataaaccattatttatgtttagaactcagtgtgctaacaatttttacattctgtgagtccctaaacatttgcggctttatatccaattcgagcaactacgtattccattgcattgcttttatatccaaataattcttcgattgcatagatcactgccattattaatttctatccttttgattatgacaaacattgcctattcttcggttctcatatgttaaaggaaatcggcgatgagttacggcgcgggtggatcgagttggaatggaggcggtcacacaagcagcgaagaagaagatgccatcattgagtacatggctgctacccttgatttcaatgagagggcaccaaggagaataccggtgcaaaccggtatcagttggatgatggacacgatggcaaatcgaagccaatgcagggcaatgttcaggcttactgcagaggagatacacaatttgcatgatctattggtcacttcttttggtcttgtaggaacagcaggggtctgttccatggaaaagcttggtattttcttgtacacgatgggtggaaatcgtccaatcagagacgcgaacaatcggtgggtccgctccaactcgacagtgtcggttcacttccaccatgttttgcaggctatgaatgatctcgctgggaaaatattgaaaccggttgatcccaacttcttagattaaaccctcagattctgcaagagaatcctttcaagcctttctaccaatcagtgggagctgtcgatggcacacatattccagttctgcctaatgcagctagcgctatgcaacacaggaaccgtcaccacataacaaccagaaatgttctagtaatatgtgatcatgatgggagaattattttctgtgatgctggctggcctggatcagttcacgaccaaaggattctcaatgaggcagtgcaggcttacccctacgatttcccacgggtaccgttaggtgagttgtatcggtcaatacacttttttttattgccaaatgtcttgattttatttaattctacacatgtgcactaatatttaattatgcgccgttaaccaggcaggtacctacttgtcgactccggatttcctaccaggatgggcttccttgcaccgtacccacatgtacggtaccacagggatcaacttgcggtcgagggagccccgccacccgtaggacgggaagagactttcaaccatcgacactccacgttgcgagggatcgtggaaagacaatttggcatcgcaaaaaagatgtggaaaatattgaaagaaatcccttattaccgagatgaggacatccctgcacgcatcattcatgcagctttcgctctacagaactttaggttggatagtaaagatccgacctatcggttcactaatgctctctacaacggcaatccagtgccgctgctgaacgattcattcgaccatatgtattacgcaacaaatagcgaggccgctatgtgcatgttgcgtgactgtattgctgatgatgcgtacaataactaccattag
More
|
||||||||||
| CDS seq | atgctctcgatccctctttcttcctcctctcgctgttgcttccgcggtcgtcgatgcgacgcaggcctggcggataatccctctttcttcccctccgctgcaggctcccgtcctcccctttcgactgtggcttgcaggcccgtgccccccccccaatcgattctcgtccgcgcgtcgtcttgcggcagcggtcggttcaaggtgctcaaaatcggggggaagtggaagagctccacgcctgtcgagctgtctgcgtcgtcctcgaggggactggccggcgtgctcgctgtgaagcagcaagcatcggcgcccatcaggccgcccatctttggcagtctggctgcctgtgtgctcgtcctctctgcctctcggtgctggcctgaagagtctcatcaaggcatccaagctggcagagttgaggagtctctatttcaggccgagcgtgtgcgtggtccgatggagacgacagcgaagaagcggaagcgagagcgggatctattgtcgatccaagaggaggggacgattgttcaatcccctcaaacaggggagatctctgtccgcggcgccgatctggagtccggcgaggactcctccgactctgtcacctccgacgctggcagcgccaaggctgctcccgacgacgtgcttcatatcgcgcatgccctctgcaaggtttgcgccaagtctcctagagccgtcatcgactttgttcgaagagtgagccctgccaccgtcggccgttcgattgattgggacgtcgtccgcgaggaagagtcatctaagatgggcgatggccgtagccggtggaccgatatggaggttcgtgtgtttcttgagagctgcttggaggagatggcagcgttcaccatcacctccaactcccccaagccgcaggcatggcagaacctaatacacaagatgtacaccaagtgcaagaagaaggtgaacaaggctcaattggagtacatttgggggcagtgtaagaagcggtacaacaggtgggtgtggctagaatcgcatgcaagcgggctgggtcgtgatccccatacatcagccattgttgccgatgatgagtggtgggaaagcaagaatgcgcaaaataaaggtgtcttaagcttcaggaatgatcctctgaagcacattgaccttcaccacgcggtattcagtgggcacacagttgtcggaaaccactccgccgtcgcaggggcagccccacaggcaccgcaaggagcagttcagtggtag
More
|
||||||||||
| Protein seq | MLSIPLSSSSRCCFRGRRCDAGLADNPSFFPSAAGSRPPLSTVACRPVPPPQSILVRASSCGSGRFKVLKIGGKWKSSTPVELSASSSRGLAGVLAVKQQASAPIRPPIFGSLAACVLVLSASRCWPEESHQGIQAGRVEESLFQAERVRGPMETTAKKRKRERDLLSIQEEGTIVQSPQTGEISVRGADLESGEDSSDSVTSDAGSAKAAPDDVLHIAHALCKVCAKSPRAVIDFVRRVSPATVGRSIDWDVVREEESSKMGDGRSRWTDMEVRVFLESCLEEMAAFTITSNSPKPQAWQNLIHKMYTKCKKKVNKAQLEYIWGQCKKRYNRWVWLESHASGLGRDPHTSAIVADDEWWESKNAQNKGVLSFRNDPLKHIDLHHAVFSGHTVVGNHSAVAGAAPQAPQGAVQW |
||||||||||
| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_07g0010850 | OsLiXu_07g0010850.01 | Chr07 | 11333218 | 11335213 | + | NAM | ||
| CDS seq | atgctctcgatccctctttcttcctcctctcgctgttgcttccgcggtcgtcgatgcgacgcaggcctggcggataatccctctttcttcccctccgctgcaggctcccgtcctcccctttcgactgtggcttgcaggcccgtgccccccccccaatcgattctcgtccgcgcgtcgtcttgcggcagcggtcggttcaaggtgctcaaaatcggggggaagtggaagagctccacgcctgtcgagctgtctgcgtcgtcctcgaggggactggccggcgtgctcgctgtgaagcagcaagcatcggcgcccatcaggccgcccatctttggcagtctggctgcctgtgtgctcgtcctctctgcctctcggtgctggcctgaagagtctcatcaaggcatccaagctggcagagttgaggagtctctatttcaggccgagcgtgtgcgtggtccgatggagacgacagcgaagaagcggaagcgagagcgggatctattgtcgatccaagaggaggggacgattgttcaatcccctcaaacaggggagatctctgtccgcggcgccgatctggagtccggcgaggactcctccgactctgtcacctccgacgctggcagcgccaaggctgctcccgacgacgtgcttcatatcgcgcatgccctctgcaaggtttgcgccaagtctcctagagccgtcatcgactttgttcgaagagtgagccctgccaccgtcggccgttcgattgattgggacgtcgtccgcgaggaagagtcatctaagatgggcgatggccgtagccggtggaccgatatggaggttcgtgtgtttcttgagagctgcttggaggagatggcagcgttcaccatcacctccaactcccccaagccgcaggcatggcagaacctaatacacaagatgtacaccaagtgcaagaagaaggtgaacaaggctcaattggagtacatttgggggcagtgtaagaagcggtacaacaggtgggtgtggctagaatcgcatgcaagcgggctgggtcgtgatccccatacatcagccattgttgccgatgatgagtggtgggaaagcaagaatgcgcaaaataaaggtgtcttaagcttcaggaatgatcctctgaagcacattgaccttcaccacgcggtattcagtgggcacacagttgtcggaaaccactccgccgtcgcaggggcagccccacaggcaccgcaaggagcagttcagtggtag
More
|
|||||||
| Protein seq | MLSIPLSSSSRCCFRGRRCDAGLADNPSFFPSAAGSRPPLSTVACRPVPPPQSILVRASSCGSGRFKVLKIGGKWKSSTPVELSASSSRGLAGVLAVKQQASAPIRPPIFGSLAACVLVLSASRCWPEESHQGIQAGRVEESLFQAERVRGPMETTAKKRKRERDLLSIQEEGTIVQSPQTGEISVRGADLESGEDSSDSVTSDAGSAKAAPDDVLHIAHALCKVCAKSPRAVIDFVRRVSPATVGRSIDWDVVREEESSKMGDGRSRWTDMEVRVFLESCLEEMAAFTITSNSPKPQAWQNLIHKMYTKCKKKVNKAQLEYIWGQCKKRYNRWVWLESHASGLGRDPHTSAIVADDEWWESKNAQNKGVLSFRNDPLKHIDLHHAVFSGHTVVGNHSAVAGAAPQAPQGAVQW
More
|
|||||||
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_07g0010850 | OsLiXu_07g0010850.02 | Chr07 | 11335223 | 11337212 | + | NAM | ||
| CDS seq | atggcgcagctcgctgctgcttatagaccaccacctccaactccacccccaacggcagcagaccggggcaagggaaagaggccagcagcaaacactactgccttagggagttcttccaagaagtcccgaagcgactccgctggactggctttggagaggattgcggacatccgagagcagagctaccagagtcgtgttgctcagatggaagcagagaagtctatgggccttgatgcgtgcatggagttggtggaaaatgatggccatgaaattggaggaagtgtgtggtatgctgcttgtgcgctattccgtgacccattgacctgcaaatgctttgttcgactcaaggacgccgctaggcgcttggaatttatacgcactggtggtactggacagaaatcggcgatgagttacggcgcgggtggatcgagttggaatggaggcggtcacacaagcagcgaagaagaagatgccatcattgagtacatggctgctacccttgatttcaatgagagggcaccaaggagaataccggtgcaaaccggtatcagttggatgatggacacgatggcaaatcgaagccaatgcagggcaatgttcaggcttactgcagaggagatacacaatttgcatgatctattggtcacttcttttggtcttgtaggaacagcaggggtctgttccatggaaaagcttggtattttcttgtacacgatgggtggaaatcgtccaatcagagacgcgaacaatcggtgggtccgctccaactcgacagtgtacctacttgtcgactccggatttcctaccaggatgggcttccttgcaccgtacccacatgtacggtaccacagggatcaacttgcggtcgagggagccccgccacccgtaggacgggaagagactttcaaccatcgacactccacgttgcgagggatcgtggaaagacaatttggcatcgcaaaaaagatgtggaaaatattgaaagaaatcccttattaccgagatgaggacatccctgcacgcatcattcatgcagctttcgctctacagaactttaggttggatagtaaagatccgacctatcggttcactaatgctctctacaacggcaatccagtgccgctgctgaacgattcattcgaccatatgtattacgcaacaaatagcgaggccgctatgtgcatgttgcgtgactgtattgctgatgatgcgtacaataactaccattag
More
|
|||||||
| Protein seq | MAQLAAAYRPPPPTPPPTAADRGKGKRPAANTTALGSSSKKSRSDSAGLALERIADIREQSYQSRVAQMEAEKSMGLDACMELVENDGHEIGGSVWYAACALFRDPLTCKCFVRLKDAARRLEFIRTGGTGQKSAMSYGAGGSSWNGGGHTSSEEEDAIIEYMAATLDFNERAPRRIPVQTGISWMMDTMANRSQCRAMFRLTAEEIHNLHDLLVTSFGLVGTAGVCSMEKLGIFLYTMGGNRPIRDANNRWVRSNSTVYLLVDSGFPTRMGFLAPYPHVRYHRDQLAVEGAPPPVGREETFNHRHSTLRGIVERQFGIAKKMWKILKEIPYYRDEDIPARIIHAAFALQNFRLDSKDPTYRFTNALYNGNPVPLLNDSFDHMYYATNSEAAMCMLRDCIADDAYNNYH
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0807000 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0807000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0027360 | SBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0028070 | SBH | 0.0 | 0.0 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0017820 | SBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_07g0017740 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0027820 | SBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0030100 | SBH | 0 | 0.2161295 | 0.009132 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0002640 | SBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0002430 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0002650 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0013200 | SBH | 0.000000 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0002590 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0011200 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G026790 | SBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0020350 | SBH | 0.0 | 0.0 | 0.0 |
