Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_02g0020350 | OGI:06027190 | 16/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr02:21898309-21902561 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ctaatggtagttattgtacgcatcatcagcaatacagtcacgcaacatgctcatagcggcctcgctatttgttgcgtaatacatatggtcgaatgaatcgttcagcagcggcactggattgccgttgtagagagcattagtgaaccgataggtcggatctttactatccaacctaaagttgtgtagagtgaaagctgcatgaatgatgcttgcagggatgtcctcatctcggtaataagggatttctttcaatattttccacatcttttttgcgatgccaaattgtctttccacgatccctcgcaacgtggagtgtcgatggttgaaagtctcttcccgtcctacgggtggcggggctccctcgaccgcaagttgatccctgtggtaccgtacatgtgggtacggtgcaaggaatcccatcctggtaggaaatccggagtcgacaagtaggtacctgcctggttaacggcgcagaattaaatattagtgcacatgtgtagaattaaataaaatcaagacatttggcaataaaaaaaagtgtattgaccgatacaactcacctaacggtacccgtgggaaatcgtaggggtaagcctgcactgcctcattgagaatcctttggtcgtgaactgatccaggccagccagcatcacagaaaataattctcccatcatgatcacatattactagaacatttttggttgttatgtggtgacggttcctgtgttgcatagcgctagctgcattaggcagaactggaatatgtgtgccatcgacagctcccactgattggtagaaaggcttgaaaggattctcttgcagaatctgagggttgtaatctaagaagttgggatcaaccggtttcaatattttcccagcgagatcattcatagcctgcaaaacatggtggaagtgaaccgacactgtcgagttggagcggacccaccgattgttcgcgtctctgattggacgatttccacccatcgtgtacaagaaaataccaagcttttccatggaacagacccctgctgttcctacaagaccaaaagaagtgaccaatagatcatgcaaattgtgtatctcctccgcagtaagcctgaacattgccctgcattggcttcgatttgccatcgtgtccatcatccaactgataccggtttgcaccggtattctccttggtgccctctcattgaaatcaagggtagcagccatgtactcaatgatggcatcttcttcttcgctgcttgtgtgaccgcctctattccaactcgatccacccgcgccgtaactcatcgccgatttcctttaacatatgagaaccggagaataggcaatgtttgtcataatcaaaaggatagaaattaataatggcagtgatctatgcaatcgaagaattatttggatataaaagcaatgcaatggaatacgtagttgctcgaattggatataaagccgcaaatgtttagggactcacagaatgtaaaaattgttagcacacagagttctaaacataaatactggtttatttggaaaacatcgcacatcacaactcaaagtaaagtatagtgcacaaactactgggtgccaccagatgactgtccagtaccaccagtgcgtataaattccaagcgcctagcggcgtccttgagtcgaacaaagcatttgcaggtcaatgggtcacggaatagcgcacaagcagcataccgcacacttcctccaatttcatggccatcattttccaccaactccatgcacgcatcaaggcccatagacttctctgcttccatctgagcagcacgactctggtagctctgctgtcggatgtccgcaatcctctccaaagccagtccagcggagtcgcttcgggacttcttggaagaactCcctgaggtaggagtgtttgctgctggcctctttcccttgccccggtctgctgccgttgggggtggagttggaggtggtggtctataagcagcagcgagctgcgccatgtcgatggtctgccactgaactgctccttgcggtgcgggtggggctgcccctgcgacgccggagtggtttccgacaactgtgcgcccactgaataccgtgtggtgaaggtcaatgtgcttcagaggatcattcctgaagcttaagacacctttattttgctgcaacataagtagacagtaaaaacaagttagtacaaggcaagtgcattaggcttgtgcaaacattgaacgtaatgaatatgtgcagtccaatgtgcattactactaaaatgctggcagtaaatgtgcacattggtaccaagttatcaaatataatcaggagtacatgttacaatgggccacacatctgacagaatgaaagaaagatagtttgaacattgtaaacataagataaactgcatatgttatattctttgtagatgagcacatttttgttcattctctctatatacatcagaaagaaggtgtgtacagctagttgaatatgtattaacatgttcctaaatgacttgtacaagatctttcctaatttactgatacactacatatagattttgtttatgcagagaacaaatcctataagcattaccatgttacattgactgctacattgcataagctaatagaatgctacattgtgtaagctatatccttcacaattaaacacatgtgaatctgttaaaatgcttttgaatgtcacatgtacaagatcatttacttcttgcaatcattgccaatcagttcatggtagacagtgtaaacatcattttgttaacttaaatacaagggaatggcacacattactaaaaacgacatgacagtaacaactatgaaacatatgtgagcacaatccttccattttactgcagctagtcatttgttggcacacacaatttgaacaaaaaaattattacacctcacaaaactgtatttataattgcatgcatgtactaaatttcagataataccaattgtaggcaaaattgttggttcaaaatatttatggtcaagtgtacgtaccgtattcttgctttcccaccactcatcatcggcaacaatggctgatgtatggggatcacgacccagcccgcttgcatgcgattctagccacacccacctgttgcaccgcttcttacactgcccccaaatgtactccaattgagccttgttcaccttcttcttgcacttggtgtacatcttgtgtattaggttttgccatgcctgcggcttgggggagttggaggtgatggtgaacgctgccatctcctccaagcagctctcaagaaacacacgaacctccatatcggtccaccggctacggccattgcccatctactccgtgcaagtcaaataaaattgaatcggaaatgaacaaattaatacaaaccaataccttagatgactcttcctcgcggacgacgtcccaatcaatcgaacggccgacggtggcaggactcactcttcgaacaaagtcgatgacggctctaggagacttggcgcaaaccttgcagagggcatgcgcgatatgaagcacgtcgtcgggagcagccttggcgctgccagcgtcggaggtgacagagtcggaggagtcctcgccggactccagatcggcgccgcggacagagatctcccctgtttgaggggattgaacaatcgtcccctcctcttggatcgacaatagatcccgctctcgcttccgcttcttcgctctcgtctccatcggaccacgcacacgctcggcctgaaatagagttggctcctcaactccgccagcttggatgccttgatgacactcttcaggccagcactgtctgacccgagaggctgagaggacgagcacacaggcagccagactgccaaagatgggcggcctgatgggcgccgatgcttgctgcttcacagcgagcacgccggccagcttttactcccttcgaggacgacgcagacagctcgacaggcgtggagctcttccacttccccccaattttgagtaccttgaaccgaccgctgccgcaagacgacgcgcggacgagaatagattggggggggggcacgggcctgcaagccacagtcgaaaggggaggaggggggctggcgagaatcggggaggacgggagcctgcagcggaggggaatcgattctccgccaggcctgcgtcgcatcgacgaccgcggaagcaagagagcaacagcgagaggaggaagaaagagggatcgagagcattggatgccctgactctgacggaaaagccgaggcgcaacg
More
|
||||||||||
| CDS seq | atgcgacgcaggcctggcggagaatcgattcccctccgctgcaggctcccgtcctccccgattctcgccagcccccctcctcccctttcgactgtggcttgcaggcccgtgccccccccccaatctattctcgtccgcgcgtcgtcttgcggcagcggtcggttcaaggtactcaaaattggggggaagtggaagagctccacgcctgtcgagctgtctgcgtcgtcctcgaagggactggccggcgtgctcgctgtgaagcagcaagcatcggcgcccatcaggccgcccatctttggcagtctggctgcctgtgtgctcgtcctctcagcctctcggtgctggcctgaagagtgtcatcaaggcatccaagctggcggagttgaggagccaactctatttcaggccgagcgtgtgcgtggtccgatggagacgagagcgaagaagcggaagcgagagcgggatctattgtcgatccaagaggaggggacgattgttcaatcccctcaaacaggggagatctctgtccgcggcgccgatctggagtccggcgaggactcctccgactctgtcacctccgacgctggcagcgccaaggctgctcccgacgacgtgcttcatatcgcgcatgccctctgcaaggtttgcgccaagtctcctagagccgtcatcgactttgttcgaagagtgagtcctgccaccgtcggccgttcgattgattgggacgtcgtccgcgaggaagagtcatctaagatgggcaatggccgtagccggtggaccgatatggaggttcgtgtgtttcttgagagctgcttggaggagatggcagcgttcaccatcacctccaactcccccaagccgcaggcatggcaaaacctaatacacaagatgtacaccaagtgcaagaagaaggtgaacaaggctcaattggagtacatttgggggcagtgtaagaagcggtgcaacaggtgggtgtggctagaatcgcatgcaagcgggctgggtcgtgatccccatacatcagccattgttgccgatgatgagtggtgggaaagcaagaatacgcaaaataaaggtgtcttaagcttcaggaatgatcctctgaagcacattgaccttcaccacacggtattcagtgggcgcacagttgtcggaaaccactccggcgtcgcaggggcagccccacccgcaccgcaaggagcagttcagtggcagaccatcgacatggcgcagctcgctgctgcttatagaccaccacctccaactccacccccaacggcagcagaccggggcaagggaaagaggccagcagcaaacactcctacctcaggGagttcttccaagaagtcccgaagcgactccgctggactggctttggagaggattgcggacatccgacagcagagctaccagagtcgtgctgctcagatggaagcagagaagtctatgggccttgatgcgtgcatggagttggtggaaaatgatggccatgaaattggaggaagtgtgcggtatgctgcttgtgcgctattccgtgacccattgacctgcaaatgctttgttcgactcaaggacgccgctaggcgcttggaatttatacgcactggtggtactggacagtcatctggtggcacccagaaatcggcgatgagttacggcgcgggtggatcgagttggaatagaggcggtcacacaagcagcgaagaagaagatgccatcattgagtacatggctgctacccttgatttcaatgagagggcaccaaggagaataccggtgcaaaccggtatcagttggatgatggacacgatggcaaatcgaagccaatgcagggcaatgttcaggcttactgcggaggagatacacaatttgcatgatctattggtcacttcttttggtcttgtaggaacagcaggggtctgttccatggaaaagcttggtattttcttgtacacgatgggtggaaatcgtccaatcagagacgcgaacaatcggtgggtccgctccaactcgacagtgtacctacttgtcgactccggatttcctaccaggatgggattccttgcaccgtacccacatgtacggtaccacagggatcaacttgcggtcgagggagccccgccacccgtaggacgggaagagactttcaaccatcgacactccacgttgcgagggatcgtggaaagacaatttggcatcgcaaaaaagatgtggaaaatattgaaagaaatcccttattaccgagatgaggacatccctgcaagcatcattcatgcagctttcactctacacaactttaggttggatagtaaagatccgacctatcggttcactaatgctctctacaacggcaatccagtgccgctgctgaacgattcattcgaccatatgtattacgcaacaaatagcgaggccgctatgagcatgttgcgtgactgtattgctgatgatgcgtacaataactaccattag
More
|
||||||||||
| Protein seq | MRRRPGGESIPLRCRLPSSPILASPPPPLSTVACRPVPPPQSILVRASSCGSGRFKVLKIGGKWKSSTPVELSASSSKGLAGVLAVKQQASAPIRPPIFGSLAACVLVLSASRCWPEECHQGIQAGGVEEPTLFQAERVRGPMETRAKKRKRERDLLSIQEEGTIVQSPQTGEISVRGADLESGEDSSDSVTSDAGSAKAAPDDVLHIAHALCKVCAKSPRAVIDFVRRVSPATVGRSIDWDVVREEESSKMGNGRSRWTDMEVRVFLESCLEEMAAFTITSNSPKPQAWQNLIHKMYTKCKKKVNKAQLEYIWGQCKKRCNRWVWLESHASGLGRDPHTSAIVADDEWWESKNTQNKGVLSFRNDPLKHIDLHHTVFSGRTVVGNHSGVAGAAPPAPQGAVQWQTIDMAQLAAAYRPPPPTPPPTAADRGKGKRPAANTPTSGSSSKKSRSDSAGLALERIADIRQQSYQSRAAQMEAEKSMGLDACMELVENDGHEIGGSVRYAACALFRDPLTCKCFVRLKDAARRLEFIRTGGTGQSSGGTQKSAMSYGAGGSSWNRGGHTSSEEEDAIIEYMAATLDFNERAPRRIPVQTGISWMMDTMANRSQCRAMFRLTAEEIHNLHDLLVTSFGLVGTAGVCSMEKLGIFLYTMGGNRPIRDANNRWVRSNSTVYLLVDSGFPTRMGFLAPYPHVRYHRDQLAVEGAPPPVGREETFNHRHSTLRGIVERQFGIAKKMWKILKEIPYYRDEDIPASIIHAAFTLHNFRLDSKDPTYRFTNALYNGNPVPLLNDSFDHMYYATNSEAAMSMLRDCIADDAYNNYH |
||||||||||
| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_02g0020350 | OsNaBo_02g0020350.01 | Chr02 | 21898309 | 21902561 | - | NAM | ||
| CDS seq | atgcgacgcaggcctggcggagaatcgattcccctccgctgcaggctcccgtcctccccgattctcgccagcccccctcctcccctttcgactgtggcttgcaggcccgtgccccccccccaatctattctcgtccgcgcgtcgtcttgcggcagcggtcggttcaaggtactcaaaattggggggaagtggaagagctccacgcctgtcgagctgtctgcgtcgtcctcgaagggactggccggcgtgctcgctgtgaagcagcaagcatcggcgcccatcaggccgcccatctttggcagtctggctgcctgtgtgctcgtcctctcagcctctcggtgctggcctgaagagtgtcatcaaggcatccaagctggcggagttgaggagccaactctatttcaggccgagcgtgtgcgtggtccgatggagacgagagcgaagaagcggaagcgagagcgggatctattgtcgatccaagaggaggggacgattgttcaatcccctcaaacaggggagatctctgtccgcggcgccgatctggagtccggcgaggactcctccgactctgtcacctccgacgctggcagcgccaaggctgctcccgacgacgtgcttcatatcgcgcatgccctctgcaaggtttgcgccaagtctcctagagccgtcatcgactttgttcgaagagtgagtcctgccaccgtcggccgttcgattgattgggacgtcgtccgcgaggaagagtcatctaagatgggcaatggccgtagccggtggaccgatatggaggttcgtgtgtttcttgagagctgcttggaggagatggcagcgttcaccatcacctccaactcccccaagccgcaggcatggcaaaacctaatacacaagatgtacaccaagtgcaagaagaaggtgaacaaggctcaattggagtacatttgggggcagtgtaagaagcggtgcaacaggtgggtgtggctagaatcgcatgcaagcgggctgggtcgtgatccccatacatcagccattgttgccgatgatgagtggtgggaaagcaagaatacgcaaaataaaggtgtcttaagcttcaggaatgatcctctgaagcacattgaccttcaccacacggtattcagtgggcgcacagttgtcggaaaccactccggcgtcgcaggggcagccccacccgcaccgcaaggagcagttcagtggcagaccatcgacatggcgcagctcgctgctgcttatagaccaccacctccaactccacccccaacggcagcagaccggggcaagggaaagaggccagcagcaaacactcctacctcaggGagttcttccaagaagtcccgaagcgactccgctggactggctttggagaggattgcggacatccgacagcagagctaccagagtcgtgctgctcagatggaagcagagaagtctatgggccttgatgcgtgcatggagttggtggaaaatgatggccatgaaattggaggaagtgtgcggtatgctgcttgtgcgctattccgtgacccattgacctgcaaatgctttgttcgactcaaggacgccgctaggcgcttggaatttatacgcactggtggtactggacagtcatctggtggcacccagaaatcggcgatgagttacggcgcgggtggatcgagttggaatagaggcggtcacacaagcagcgaagaagaagatgccatcattgagtacatggctgctacccttgatttcaatgagagggcaccaaggagaataccggtgcaaaccggtatcagttggatgatggacacgatggcaaatcgaagccaatgcagggcaatgttcaggcttactgcggaggagatacacaatttgcatgatctattggtcacttcttttggtcttgtaggaacagcaggggtctgttccatggaaaagcttggtattttcttgtacacgatgggtggaaatcgtccaatcagagacgcgaacaatcggtgggtccgctccaactcgacagtgtacctacttgtcgactccggatttcctaccaggatgggattccttgcaccgtacccacatgtacggtaccacagggatcaacttgcggtcgagggagccccgccacccgtaggacgggaagagactttcaaccatcgacactccacgttgcgagggatcgtggaaagacaatttggcatcgcaaaaaagatgtggaaaatattgaaagaaatcccttattaccgagatgaggacatccctgcaagcatcattcatgcagctttcactctacacaactttaggttggatagtaaagatccgacctatcggttcactaatgctctctacaacggcaatccagtgccgctgctgaacgattcattcgaccatatgtattacgcaacaaatagcgaggccgctatgagcatgttgcgtgactgtattgctgatgatgcgtacaataactaccattag
More
|
|||||||
| Protein seq | MRRRPGGESIPLRCRLPSSPILASPPPPLSTVACRPVPPPQSILVRASSCGSGRFKVLKIGGKWKSSTPVELSASSSKGLAGVLAVKQQASAPIRPPIFGSLAACVLVLSASRCWPEECHQGIQAGGVEEPTLFQAERVRGPMETRAKKRKRERDLLSIQEEGTIVQSPQTGEISVRGADLESGEDSSDSVTSDAGSAKAAPDDVLHIAHALCKVCAKSPRAVIDFVRRVSPATVGRSIDWDVVREEESSKMGNGRSRWTDMEVRVFLESCLEEMAAFTITSNSPKPQAWQNLIHKMYTKCKKKVNKAQLEYIWGQCKKRCNRWVWLESHASGLGRDPHTSAIVADDEWWESKNTQNKGVLSFRNDPLKHIDLHHTVFSGRTVVGNHSGVAGAAPPAPQGAVQWQTIDMAQLAAAYRPPPPTPPPTAADRGKGKRPAANTPTSGSSSKKSRSDSAGLALERIADIRQQSYQSRAAQMEAEKSMGLDACMELVENDGHEIGGSVRYAACALFRDPLTCKCFVRLKDAARRLEFIRTGGTGQSSGGTQKSAMSYGAGGSSWNRGGHTSSEEEDAIIEYMAATLDFNERAPRRIPVQTGISWMMDTMANRSQCRAMFRLTAEEIHNLHDLLVTSFGLVGTAGVCSMEKLGIFLYTMGGNRPIRDANNRWVRSNSTVYLLVDSGFPTRMGFLAPYPHVRYHRDQLAVEGAPPPVGREETFNHRHSTLRGIVERQFGIAKKMWKILKEIPYYRDEDIPASIIHAAFTLHNFRLDSKDPTYRFTNALYNGNPVPLLNDSFDHMYYATNSEAAMSMLRDCIADDAYNNYH
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0181400 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g37680 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0181400 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0022990 | SBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0023090 | SBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0023060 | SBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0022790 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0022710 | SBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0345300 | SBH | 0 | 0 | 0.0035165 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0024060 | RBH | 0.000000 | 0.000000 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0032100 | SBH | 0.011508 | 0.172885 | 0.062329 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_09g0004970 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0022630 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0012840 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0011410 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0012480 | SBH | 0.0 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G012350 | SBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_10g0001090 | RBH | 0.069817 | 2.611383 | 0.604130 |
