Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os02g0181400 | OGI:02013830 | 16/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr02:4551426-4552860 | ||||||||
| Gene Symbol | MSL10, OsMSL10, MSL10 | ||||||||||
| DNA seq | CTAACGCTTCATCATCTCCTTTTCATGCTCCCTCTCGATCAAATCGAGTCTTCCTTCATTTGTTTCTAGGTAGCTAAAGACCTCCCTAAATTCAGGCTTCATAATCAAAGTTGTGGCTGTGTGCATTAGAGCAGTTTTTTCTTCTACCCCACAATCTTTCATCATCTTCATAGCCTCTTTAATGGTAGGGACTACATTGCATGGAGAAGCTGACGATGCTTCAACACTTGTACAAATCTTTTCTGCCGCCGTTTCTATCTTCAAACAAGTGTTCTTGTACATACGAGCGAATGGGCTCTTCTCATCCTTATCTCGAACAATAGTGGACGACCCCTTGCGTTTATTTTTTTCGGGGTTCACTGTCTCTGCAGGTTTTGGTACCTCAGCCACATCATCATCACTTGCCTCATCGGAGGATACATTTCCAGGACATGATGCTGAAGCCCCACTAACATGTGACTTGCCAAAAATGATATGCAAATCATCTAGGAATTTTGGTCCTTGTTTGCGAAACTTCACATGATCGCATTTGATTCCTTTCTCACGATTGTTGCATCTCTGAAATTAAATAAATAAAGTTAGCAAGGCACACTACAACAAAGAATAGAAAAAAAATATCACAGGGTGAAAGAATAGTACTTACATCAAGGTGTTCTTCCCACCATTCCGGCGAAAAGACAATAGTTTGTTTTGCCTCATCCCATCCAAGACCAGTGGCACAATTCTTGAACTCCATAAACATTGTATATTCCTTTTTCAACACATCTAACTTGTTCTTCAATTGTTTTTTGGTTCGCTCGTCACCCGATTTTTCTGCAAACTTGGAAACAACATTTTTCCAACCCGTAGTGGTGAAAATTCCCATGGGTCTATTCCCAGCTTCTATCTCTTCTTTGCAAACATCAAACAAATGCCTTACAAAACCATCACCCCAATCTGCCTTGTCACCCATTCTTGAACCAAATAAATTTTTGTTCAATCAATTTGCACGCCAAAAATCAATTTGCTGTAACATTCTAGGGGCAACACATGCATCAACACAAGAGCAGGAGCATTCGGCCTCACCTTTCATGCCGGCCGGAGCAGTGGCGAAGGAGTCGTAGTAGCGTCGGGCGGCGTGGGGCGGCGTCGGGCAGGGGTGGCTTTGGGCAGCCTGGGGCAGCGTCGGCCGGCGTCGGGGATCATCGGCCGGCATGGGGCGGCGTCGGCCGGCGTCGGGCAGGCAACGAGGAGACGGCCGTCGGCCGTCGGGCGACCTGGGGCGACGTCGGGTGGCGTGGGGGCGGGCGACGGGGAGACGGGCGATGGAGCAAGCCGGCACCGGGAGATGCGGCGCGCGACGGCGGGACCACAGGCGGGAGCACCCGGCGGTGGGAGCACGGCGGCGCGCGCTGGCGGCGGCAAACCCTAGCGCCGCGTCGAACCCATGGCCAGC
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| CDS seq | ATGGGTGACAAGGCAGATTGGGGTGATGGTTTTGTAAGGCATTTGTTTGATGTTTGCAAAGAAGAGATAGAAGCTGGGAATAGACCCATGGGAATTTTCACCACTACGGGTTGGAAAAATGTTGTTTCCAAGTTTGCAGAAAAATCGGGTGACGAGCGAACCAAAAAACAATTGAAGAACAAGTTAGATGTGTTGAAAAAGGAATATACAATGTTTATGGAGTTCAAGAATTGTGCCACTGGTCTTGGATGGGATGAGGCAAAACAAACTATTGTCTTTTCGCCGGAATGGTGGGAAGAACACCTTGATAGATGCAACAATCGTGAGAAAGGAATCAAATGCGATCATGTGAAGTTTCGCAAACAAGGACCAAAATTCCTAGATGATTTGCATATCATTTTTGGCAAGTCACATGTTAGTGGGGCTTCAGCATCATGTCCTGGAAATGTATCCTCCGATGAGGCAAGTGATGATGATGTGGCTGAGGTACCAAAACCTGCAGAGACAGTGAACCCCGAAAAAAATAAACGCAAGGGGTCGTCCACTATTGTTCGAGATAAGGATGAGAAGAGCCCATTCGCTCGTATGTACAAGAACACTTGTTTGAAGATAGAAACGGCGGCAGAAAAGATTTGTACAAGTGTTGAAGCATCGTCAGCTTCTCCATGCAATGTAGTCCCTACCATTAAAGAGGCTATGAAGATGATGAAAGATTGTGGGGTAGAAGAAAAAACTGCTCTAATGCACACAGCCACAACTTTGATTATGAAGCCTGAATTTAGGGAGGTCTTTAGCTACCTAGAAACAAATGAAGGAAGACTCGATTTGATCGAGAGGGAGCATGAAAAGGAGATGATGAAGCGTTAG
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| Protein seq | MGDKADWGDGFVRHLFDVCKEEIEAGNRPMGIFTTTGWKNVVSKFAEKSGDERTKKQLKNKLDVLKKEYTMFMEFKNCATGLGWDEAKQTIVFSPEWWEEHLDRCNNREKGIKCDHVKFRKQGPKFLDDLHIIFGKSHVSGASASCPGNVSSDEASDDDVAEVPKPAETVNPEKNKRKGSSTIVRDKDEKSPFARMYKNTCLKIETAAEKICTSVEASSASPCNVVPTIKEAMKMMKDCGVEEKTALMHTATTLIMKPEFREVFSYLETNEGRLDLIEREHEKEMMKR |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os02g0181400 | Os02t0181400-00 | Chr02 | 4551426 | 4552860 | - | irgsp1_rep | ||
| CDS seq | ATGGGTGACAAGGCAGATTGGGGTGATGGTTTTGTAAGGCATTTGTTTGATGTTTGCAAAGAAGAGATAGAAGCTGGGAATAGACCCATGGGAATTTTCACCACTACGGGTTGGAAAAATGTTGTTTCCAAGTTTGCAGAAAAATCGGGTGACGAGCGAACCAAAAAACAATTGAAGAACAAGTTAGATGTGTTGAAAAAGGAATATACAATGTTTATGGAGTTCAAGAATTGTGCCACTGGTCTTGGATGGGATGAGGCAAAACAAACTATTGTCTTTTCGCCGGAATGGTGGGAAGAACACCTTGATAGATGCAACAATCGTGAGAAAGGAATCAAATGCGATCATGTGAAGTTTCGCAAACAAGGACCAAAATTCCTAGATGATTTGCATATCATTTTTGGCAAGTCACATGTTAGTGGGGCTTCAGCATCATGTCCTGGAAATGTATCCTCCGATGAGGCAAGTGATGATGATGTGGCTGAGGTACCAAAACCTGCAGAGACAGTGAACCCCGAAAAAAATAAACGCAAGGGGTCGTCCACTATTGTTCGAGATAAGGATGAGAAGAGCCCATTCGCTCGTATGTACAAGAACACTTGTTTGAAGATAGAAACGGCGGCAGAAAAGATTTGTACAAGTGTTGAAGCATCGTCAGCTTCTCCATGCAATGTAGTCCCTACCATTAAAGAGGCTATGAAGATGATGAAAGATTGTGGGGTAGAAGAAAAAACTGCTCTAATGCACACAGCCACAACTTTGATTATGAAGCCTGAATTTAGGGAGGTCTTTAGCTACCTAGAAACAAATGAAGGAAGACTCGATTTGATCGAGAGGGAGCATGAAAAGGAGATGATGAAGCGTTAG
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| Protein seq | MGDKADWGDGFVRHLFDVCKEEIEAGNRPMGIFTTTGWKNVVSKFAEKSGDERTKKQLKNKLDVLKKEYTMFMEFKNCATGLGWDEAKQTIVFSPEWWEEHLDRCNNREKGIKCDHVKFRKQGPKFLDDLHIIFGKSHVSGASASCPGNVSSDEASDDDVAEVPKPAETVNPEKNKRKGSSTIVRDKDEKSPFARMYKNTCLKIETAAEKICTSVEASSASPCNVVPTIKEAMKMMKDCGVEEKTALMHTATTLIMKPEFREVFSYLETNEGRLDLIEREHEKEMMKR
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0181400 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g08450 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0599400 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0021010 | SBH | 0.0 | 0.000000 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0021090 | SBH | 0.0 | 0.0 | 0.179640 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0021070 | SBH | 0.103746 | 0.0 | 1.245540 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0020820 | SBH | 0.0 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0020750 | SBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0077300 | RBH | 0 | 0 | 0.1162035 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0020470 | SBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0079600 | RBH | 0 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0020960 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0020700 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0021150 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0020830 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0020650 | RBH | 0.0 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G021100 | SBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0020840 | SBH | 0.0 | 5.863395 | 4.340547 |
