Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os11g0599400 | OGI:06027190 | 16/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr11:22943173-22944537 | ||||||||
| Gene Symbol | MSL39, OsMSL39 | ||||||||||
| DNA seq | CTTTTCATGCTCCCTCTCGATCAAATCGAGTCTTCCTTCATTTGTTTCTAGCTAGCTAAAGACCTCCCTAAATTCAGGCTTCATAATCAAAGTTGTGGCTGTGTGCATTAGAGCAGTTTTTTCTTCTACCCCACAATCTTTCACCATCTTCATAGCCTCTTTAATGGTAGGGACTACATTGCATGGAGAAGCTGATGATGCTTCAACACTTGTACAAATCTTTTCTGCCGCCGTTTCTATTTCAAACAAGTGTTCTTGTACATACGAGCGAATGGGCTCTTCTCATCCTTATCTCGAACAATAGTGGATGACCCCTTGCGTTTATTTTTTCCGGGGTTCACTGTCTTTGCAGGTTTTGGTACCTCAGCCACATCATCATCACTTGCCTCATCGGAGGATACATCTCCAGGACATGATGCTGAAGCCCCACTAACATGTGACTTGCCAAAAATGATATGCAAATCATCTAGGAATTTTGGTCCTTGTTTGCGAAACTTCACATGATTGCATTTGATTCCTTTCTCACGATTGTTGCATCTCTGAAATTAAATAAATAAAGTTAGCAAGGCACACTATAACAAAGAATAGAAAAAAATATCACAGGGTGAAAGAATAGTACTTACAGCAAGGTGTTCTTCCCACCATTCCAGCGAACAGACAATAGTTTGTTTTGCCTCATCCCATCCAAGACCAGTGGCACAATTCTTGAACTCCATAAACATTGTATATTCCTTTTTCAACACATCTAACTTGTTCTTCAATTGTTTTTTGGTTCGCTTGTCACCCGATTTTTCTGCAAACTTGGAAACAACATTTTTCCAACCTGTAGTGGTGAAAATTCCCATGGGTCTATTCCCAGCTTCTATCTCTTCTTTGCAAACATCAAACAAATGCCTTACAAAACCATCACCCCAATCTGCCTTGTCACCCATTCTTGAACCAAATAAATTTTTGTTCAATCAATTTGCACGCCAAAAATCAATTTGCTGTAACATTCTAGGGGCAACACATGCATCAACACAAGAGCAGGAGCATTCGGCCTCACCTTTCAGGCCGGCCGGAGCAGTGGCGAAGGAGTCGTAGCAGCGTCGGGCGGCGTGGGGCGGCGTCGGGCAGGGGTGGCTTCGGGCAGCCTGGGGCAGCGTCGGCCGGCGTCGGGGATCGTCGGCCGGCGTGGGGCGGCGTCGGCCGGCGTCGGGCAGGCAACGAGGAGACGGCCGTCGGCCGTCGGGCGACCTGGGGCGACGTCAGGTGGCGTGGGGGCGGGCAACGGGGAGACAGGCGACGGAGCAAGCCGGCACCGGGAGATGCGGCGCGCGACGACGGGACCACAAGCGGGAGCACCCGGCGGTGGAAGCACGGCGG
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| CDS seq | ATGGGTGACAAGGCAGATTGGGGTGATGGTTTTGTAAGGCATTTGTTTGATGTTTGCAAAGAAGAGATAGAAGCTGGGAATAGACCCATGGGAATTTTCACCACTACAGGTTGGAAAAATGTTGTTTCCAAGTTTGCAGAAAAATCGGGTGACAAGCGAACCAAAAAACAATTGAAGAACAAGTTAGATGTGTTGAAAAAGGAATATACAATGTTTATGGAGTTCAAGAATTGTGCCACTGGTCTTGGATGGGATGAGGCAAAACAAACTATTGTCTGTTCGCTGGAATGGTGGGAAGAACACCTTGCTAGATGCAACAATCGTGAGAAAGGAATCAAATGCAATCATGTGAAGTTTCGCAAACAAGGACCAAAATTCCTAGATGATTTGCATATCATTTTTGGCAAGTCACATGTTAGTGGGGCTTCAGCATCATGTCCTGGAGATGTATCCTCCGATGAGGCAAGTGATGATGATGTGGCTGAGGTACCAAAACCTGCAAAGACAGTGAACCCCGGAAAAAATAAACGCAAGGGGTCATCCACTATTGTTCGAGATAAGGATGAGAAGAGCCCATTCGCTCGTATGTACAAGAACACTTGTTTGAAATAG
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| Protein seq | MGDKADWGDGFVRHLFDVCKEEIEAGNRPMGIFTTTGWKNVVSKFAEKSGDKRTKKQLKNKLDVLKKEYTMFMEFKNCATGLGWDEAKQTIVCSLEWWEEHLARCNNREKGIKCNHVKFRKQGPKFLDDLHIIFGKSHVSGASASCPGDVSSDEASDDDVAEVPKPAKTVNPGKNKRKGSSTIVRDKDEKSPFARMYKNTCLK |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os11g0599400 | Os11t0599400-00 | Chr11 | 22943173 | 22944537 | - | irgsp1_rep | ||
| CDS seq | ATGGGTGACAAGGCAGATTGGGGTGATGGTTTTGTAAGGCATTTGTTTGATGTTTGCAAAGAAGAGATAGAAGCTGGGAATAGACCCATGGGAATTTTCACCACTACAGGTTGGAAAAATGTTGTTTCCAAGTTTGCAGAAAAATCGGGTGACAAGCGAACCAAAAAACAATTGAAGAACAAGTTAGATGTGTTGAAAAAGGAATATACAATGTTTATGGAGTTCAAGAATTGTGCCACTGGTCTTGGATGGGATGAGGCAAAACAAACTATTGTCTGTTCGCTGGAATGGTGGGAAGAACACCTTGCTAGATGCAACAATCGTGAGAAAGGAATCAAATGCAATCATGTGAAGTTTCGCAAACAAGGACCAAAATTCCTAGATGATTTGCATATCATTTTTGGCAAGTCACATGTTAGTGGGGCTTCAGCATCATGTCCTGGAGATGTATCCTCCGATGAGGCAAGTGATGATGATGTGGCTGAGGTACCAAAACCTGCAAAGACAGTGAACCCCGGAAAAAATAAACGCAAGGGGTCATCCACTATTGTTCGAGATAAGGATGAGAAGAGCCCATTCGCTCGTATGTACAAGAACACTTGTTTGAAATAG
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| Protein seq | MGDKADWGDGFVRHLFDVCKEEIEAGNRPMGIFTTTGWKNVVSKFAEKSGDKRTKKQLKNKLDVLKKEYTMFMEFKNCATGLGWDEAKQTIVCSLEWWEEHLARCNNREKGIKCNHVKFRKQGPKFLDDLHIIFGKSHVSGASASCPGDVSSDEASDDDVAEVPKPAKTVNPGKNKRKGSSTIVRDKDEKSPFARMYKNTCLK
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0599400 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g38660 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0181400 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0018510 | SBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0006020 | SBH | 0.0 | 0.000000 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0006050 | SBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0005960 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0352300 | RBH | 0 | 0 | 0.0543065 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0024060 | RBH | 0.000000 | 0.000000 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0364900 | RBH | 0 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0023390 | SBH | 0.000000 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0021550 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
