Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os11g38660 | OGI:06027190 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr11:22941580-22944104 | ||||||||
| Gene Symbol | MSL39, OsMSL39 | ||||||||||
| DNA seq | CTATCCTCCTCTTGCACTAATCAAAGCATCAGCTATCCTAGTACGAATAGTATTCATGGTATCATCATTCTCTGCATCTTCACTCTCATCGTCTGACGTGTCACTGGTATCTTCTAGTAAGTAGTCCTCATCAGCATCACATCTCTCAAACTCCTTATCACGTAAATTGCTATCACGGACGAAGTTATGCAAAGCAAGACAAGCCATGATGATATGCTTCTGAGTAGTATGTGAGAAACTTGGGATGCCCTTCAAAATACGCCACTTTTGCTTCAAGACTCCAAAAGACCTTTCAATAACATTTCGAAGGGAGGAATGCAAGAAATTGAACACCTCATACTTTCCTTGAGGAGGTCCCGAACGATGCCGAAATTCTGGTATATGGTATGTGGTTCCTTTGAAAGGTGCAAGATACCCTATTCGGTTTGGATAACCTGAGTCGACGAGATAATATTTTCCTATAAAACTAAGTTAGTAATGCAAATAATAATACTAGTGTACAAATATTAAAATTAATGAAGGAACCACTTATACCTGTAGGAGGCATGGGAAATGAAGGAAAATTAGCCAATGCATGACTGAGGATGCGCGAGTCATGTGCAGAACCTGGCCAACCAGCAACCGCAAAGATAAACCTCATGTCAAAGTTATAAATAGCTAGCACATTCTGAGATGTATATCCATGATGACATGTGTGGCTAATTGTTTCATCCAATAGCACTACCACTGAAATATGTGAACCATCTATTGCTCCAATCGCATCTTTAAAGTATGGCCAAAATCGATCCTCTCTCAACCTTCCATGCTCCATAGAAAAAGTAGGATCTCTAGGAGTAATATTGTCTTTAGCTAACTTGCGCAAACACTTCAACACTTCATGAAACTTGGTGTGAACCGTCCAAAGTGACCGTGTGAAATGACTTTCAACTTGTGAAAATGATTGTGGCCCTCCGACGATCCACAAAAACATCGCCAATGACTCAATGGATGAAACATTGTTGCTCGAGCTCAATCCGTAGGTAGAGACTAGCAAGTCATGAAGTGCATGAAAAATCTCAGGGCTCATCCGAAACATCTTATAAAAATACCTTGGACGATCCATCAACCTCATCACCCATTGAATTCCAGTTTCTGGCGTTTGTCTGTATGCACCTTTTTGCAAATACCGCTCAGTGTACAAATTGGCCATTTCTCCCATAATAGAAGCATGTTGGGCAAGGTCAGCTAGCATCAATAATCCCTTTTGCCCTTCTTTGGCTACATCTACTAATTTTCCATCCATCTACAGAAGATATAGTAATAATTAACGGCAAACAAGTACAACAACAAGTATAGAACATAACATCACATAGGGAAGCAAATATTAGCTCACAACATGGAAATAACGGTTTTACATGTCCAAGCAAATATTGGTTTACAACATAGAAATAAATAACTCAAAGTGTTCTCACATAGAGAAGCAAATATTGGTTACAACATAGAAATAAATAACTCAAAGTGTTCTCACATAGGGAAGCAAATATCACATAAACAAGGCAACAATCGATAAAAATAAAATTTTAACGTAGGGAATCACTAAGGCTTCATCATCTCCTTTTCATGCTCCCTCTCGATCAAATCGAGTCTTCCTTCATTTGTTTCTAGCTAGCTAAAGACCTCCCTAAATTCAGGCTTCATAATCAAAGTTGTGGCTGTGTGCATTAGAGCAGTTTTTTCTTCTACCCCACAATCTTTCACCATCTTCATAGCCTCTTTAATGGTAGGGACTACATTGCATGGAGAAGCTGATGATGCTTCAACACTTGTACAAATCTTTTCTGCCGCCGTTTCTATTTCAAACAAGTGTTCTTGTACATACGAGCGAATGGGCTCTTCTCATCCTTATCTCGAACAATAGTGGATGACCCCTTGCGTTTATTTTTTCCGGGGTTCACTGTCTTTGCAGGTTTTGGTACCTCAGCCACATCATCATCACTTGCCTCATCGGAGGATACATCTCCAGGACATGATGCTGAAGCCCCACTAACATGTGACTTGCCAAAAATGATATGCAAATCATCTAGGAATTTTGGTCCTTGTTTGCGAAACTTCACATGATTGCATTTGATTCCTTTCTCACGATTGTTGCATCTCTGAAATTAAATAAATAAAGTTAGCAAGGCACACTATAACAAAGAATAGAAAAAAATATCACAGGGTGAAAGAATAGTACTTACAGCAAGGTGTTCTTCCCACCATTCCAGCGAACAGACAATAGTTTGTTTTGCCTCATCCCATCCAAGACCAGTGGCACAATTCTTGAACTCCATAAACATTGTATATTCCTTTTTCAACACATCTAACTTGTTCTTCAATTGTTTTTTGGTTCGCTTGTCACCCGATTTTTCTGCAAACTTGGAAACAACATTTTTCCAACCTGTAGTGGTGAAAATTCCCATGGGTCTATTCCCAGCTTCTATCTCTTCTTTGCAAACATCAAACAAATGCCTTACAAAACCATCACCCCAATCTGCCTTGTCACCCAT
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| CDS seq | ATGGGTGACAAGGCAGATTGGGGTGATGGTTTTGTAAGGCATTTGTTTGATGTTTGCAAAGAAGAGATAGAAGCTGGGAATAGACCCATGGGAATTTTCACCACTACAGGTTGGAAAAATGTTGTTTCCAAGTTTGCAGAAAAATCGGGTGACAAGCGAACCAAAAAACAATTGAAGAACAAGTTAGATGTGTTGAAAAAGGAATATACAATGTTTATGGAGTTCAAGAATTGTGCCACTGGTCTTGGATGGGATGAGGCAAAACAAACTATTGTCTGTTCGCTGGAATGGTGGGAAGAACACCTTGCTAGATGCAACAATCGTGAGAAAGGAATCAAATGCAATCATGTGAAGTTTCGCAAACAAGGACCAAAATTCCTAGATGATTTGCATATCATTTTTGGCAAGTCACATGTTAGTGGGGCTTCAGCATCATGTCCTGGAGATGTATCCTCCGATGAGGCAAGTGATGATGATGTGGCTGAGGTACCAAAACCTGCAAAGACAGTGAACCCCGGAAAAAATAAACGCAAGGGGTCATCCACTATTGTTCGAGATAAGGATGAGAAGAGCCCATTCGCTCAAACGGCGGCAGAAAAGATTTGTACAAGTGTTGAAGCATCATCAGCTTCTCCATGCAATGTAGTCCCTACCATTAAAGAGGCTATGAAGATGGTGAAAGATTGTGGGGTAGAAGAAAAAACTGCTCTAATGCACACAGCCACAACTTTGATTATGAAGCCTGAATTTAGGGAGATGGATGGAAAATTAGTAGATGTAGCCAAAGAAGGGCAAAAGGGATTATTGATGCTAGCTGACCTTGCCCAACATGCTTCTATTATGGGAGAAATGGCCAATTTGTACACTGAGCGGTATTTGCAAAAAGGTGCATACAGACAAACGCCAGAAACTGGAATTCAATGGGTGATGAGGTTGATGGATCGTCCAAGGTATTTTTATAAGATGTTTCGGATGAGCCCTGAGATTTTTCATGCACTTCATGACTTGCTAGTCTCTACCTACGGATTGAGCTCGAGCAACAATGTTTCATCCATTGAGTCATTGGCGATGTTTTTGTGGATCGTCGGAGGGCCACAATCATTTTCACAAGTTGAAAGTCATTTCACACGGTCACTTTGGACGGTTCACACCAAGTTTCATGAAGTGTTGAAGTGTTTGCGCAAGTTAGCTAAAGACAATATTACTCCTAGAGATCCTACTTTTTCTATGGAGCATGGAAGGTTGAGAGAGGATCGATTTTGGCCATACTTTAAAGATGCGATTGGAGCAATAGATGGTTCACATATTTCAGTGGTAGTGCTATTGGATGAAACAATTAGCCACACATGTCATCATGGATATACATCTCAGAATGTGCTAGCTATTTATAACTTTGACATGAGGTTTATCTTTGCGGTTGCTGGTTGGCCAGGTTCTGCACATGACTCGCGCATCCTCAGTCATGCATTGGCTAATTTTCCTTCATTTCCCATGCCTCCTACAGGTTATCCAAACCGAATAGGGTATCTTGCACCTTTCAAAGGAACCACATACCATATACCAGAATTTCGGCATCGTTCGGGACCTCCTCAAGGAAAGTATGAGGTGTTCAATTTCTTGCATTCCTCCCTTCGAAATGTTATTGAAAGGTCTTTTGGAGTCTTGAAGCAAAAGTGGCGTATTTTGAAGGGCATCCCAAGTTTCTCACATACTACTCAGAAGCATATCATCATGGCTTGTCTTGCTTTGCATAACTTCGTCCGTGATAGCAATTTACGTGATAAGGAGTTTGAGAGATGTGATGCTGATGAGGACTACTTACTAGAAGATACCAGTGACACGTCAGACGATGAGAGTGAAGATGCAGAGAATGATGATACCATGAATACTATTCGTACTAGGATAGCTGATGCTTTGATTAGTGCAAGAGGAGGATAG
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| Protein seq | MGDKADWGDGFVRHLFDVCKEEIEAGNRPMGIFTTTGWKNVVSKFAEKSGDKRTKKQLKNKLDVLKKEYTMFMEFKNCATGLGWDEAKQTIVCSLEWWEEHLARCNNREKGIKCNHVKFRKQGPKFLDDLHIIFGKSHVSGASASCPGDVSSDEASDDDVAEVPKPAKTVNPGKNKRKGSSTIVRDKDEKSPFAQTAAEKICTSVEASSASPCNVVPTIKEAMKMVKDCGVEEKTALMHTATTLIMKPEFREMDGKLVDVAKEGQKGLLMLADLAQHASIMGEMANLYTERYLQKGAYRQTPETGIQWVMRLMDRPRYFYKMFRMSPEIFHALHDLLVSTYGLSSSNNVSSIESLAMFLWIVGGPQSFSQVESHFTRSLWTVHTKFHEVLKCLRKLAKDNITPRDPTFSMEHGRLREDRFWPYFKDAIGAIDGSHISVVVLLDETISHTCHHGYTSQNVLAIYNFDMRFIFAVAGWPGSAHDSRILSHALANFPSFPMPPTGYPNRIGYLAPFKGTTYHIPEFRHRSGPPQGKYEVFNFLHSSLRNVIERSFGVLKQKWRILKGIPSFSHTTQKHIIMACLALHNFVRDSNLRDKEFERCDADEDYLLEDTSDTSDDESEDAENDDTMNTIRTRIADALISARGG |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os11g38660 | LOC_Os11g38660.1 | Chr11 | 22941580 | 22944104 | - | MSU_osa1r7 | ||
| CDS seq | ATGGGTGACAAGGCAGATTGGGGTGATGGTTTTGTAAGGCATTTGTTTGATGTTTGCAAAGAAGAGATAGAAGCTGGGAATAGACCCATGGGAATTTTCACCACTACAGGTTGGAAAAATGTTGTTTCCAAGTTTGCAGAAAAATCGGGTGACAAGCGAACCAAAAAACAATTGAAGAACAAGTTAGATGTGTTGAAAAAGGAATATACAATGTTTATGGAGTTCAAGAATTGTGCCACTGGTCTTGGATGGGATGAGGCAAAACAAACTATTGTCTGTTCGCTGGAATGGTGGGAAGAACACCTTGCTAGATGCAACAATCGTGAGAAAGGAATCAAATGCAATCATGTGAAGTTTCGCAAACAAGGACCAAAATTCCTAGATGATTTGCATATCATTTTTGGCAAGTCACATGTTAGTGGGGCTTCAGCATCATGTCCTGGAGATGTATCCTCCGATGAGGCAAGTGATGATGATGTGGCTGAGGTACCAAAACCTGCAAAGACAGTGAACCCCGGAAAAAATAAACGCAAGGGGTCATCCACTATTGTTCGAGATAAGGATGAGAAGAGCCCATTCGCTCAAACGGCGGCAGAAAAGATTTGTACAAGTGTTGAAGCATCATCAGCTTCTCCATGCAATGTAGTCCCTACCATTAAAGAGGCTATGAAGATGGTGAAAGATTGTGGGGTAGAAGAAAAAACTGCTCTAATGCACACAGCCACAACTTTGATTATGAAGCCTGAATTTAGGGAGATGGATGGAAAATTAGTAGATGTAGCCAAAGAAGGGCAAAAGGGATTATTGATGCTAGCTGACCTTGCCCAACATGCTTCTATTATGGGAGAAATGGCCAATTTGTACACTGAGCGGTATTTGCAAAAAGGTGCATACAGACAAACGCCAGAAACTGGAATTCAATGGGTGATGAGGTTGATGGATCGTCCAAGGTATTTTTATAAGATGTTTCGGATGAGCCCTGAGATTTTTCATGCACTTCATGACTTGCTAGTCTCTACCTACGGATTGAGCTCGAGCAACAATGTTTCATCCATTGAGTCATTGGCGATGTTTTTGTGGATCGTCGGAGGGCCACAATCATTTTCACAAGTTGAAAGTCATTTCACACGGTCACTTTGGACGGTTCACACCAAGTTTCATGAAGTGTTGAAGTGTTTGCGCAAGTTAGCTAAAGACAATATTACTCCTAGAGATCCTACTTTTTCTATGGAGCATGGAAGGTTGAGAGAGGATCGATTTTGGCCATACTTTAAAGATGCGATTGGAGCAATAGATGGTTCACATATTTCAGTGGTAGTGCTATTGGATGAAACAATTAGCCACACATGTCATCATGGATATACATCTCAGAATGTGCTAGCTATTTATAACTTTGACATGAGGTTTATCTTTGCGGTTGCTGGTTGGCCAGGTTCTGCACATGACTCGCGCATCCTCAGTCATGCATTGGCTAATTTTCCTTCATTTCCCATGCCTCCTACAGGTTATCCAAACCGAATAGGGTATCTTGCACCTTTCAAAGGAACCACATACCATATACCAGAATTTCGGCATCGTTCGGGACCTCCTCAAGGAAAGTATGAGGTGTTCAATTTCTTGCATTCCTCCCTTCGAAATGTTATTGAAAGGTCTTTTGGAGTCTTGAAGCAAAAGTGGCGTATTTTGAAGGGCATCCCAAGTTTCTCACATACTACTCAGAAGCATATCATCATGGCTTGTCTTGCTTTGCATAACTTCGTCCGTGATAGCAATTTACGTGATAAGGAGTTTGAGAGATGTGATGCTGATGAGGACTACTTACTAGAAGATACCAGTGACACGTCAGACGATGAGAGTGAAGATGCAGAGAATGATGATACCATGAATACTATTCGTACTAGGATAGCTGATGCTTTGATTAGTGCAAGAGGAGGATAG
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| Protein seq | MGDKADWGDGFVRHLFDVCKEEIEAGNRPMGIFTTTGWKNVVSKFAEKSGDKRTKKQLKNKLDVLKKEYTMFMEFKNCATGLGWDEAKQTIVCSLEWWEEHLARCNNREKGIKCNHVKFRKQGPKFLDDLHIIFGKSHVSGASASCPGDVSSDEASDDDVAEVPKPAKTVNPGKNKRKGSSTIVRDKDEKSPFAQTAAEKICTSVEASSASPCNVVPTIKEAMKMVKDCGVEEKTALMHTATTLIMKPEFREMDGKLVDVAKEGQKGLLMLADLAQHASIMGEMANLYTERYLQKGAYRQTPETGIQWVMRLMDRPRYFYKMFRMSPEIFHALHDLLVSTYGLSSSNNVSSIESLAMFLWIVGGPQSFSQVESHFTRSLWTVHTKFHEVLKCLRKLAKDNITPRDPTFSMEHGRLREDRFWPYFKDAIGAIDGSHISVVVLLDETISHTCHHGYTSQNVLAIYNFDMRFIFAVAGWPGSAHDSRILSHALANFPSFPMPPTGYPNRIGYLAPFKGTTYHIPEFRHRSGPPQGKYEVFNFLHSSLRNVIERSFGVLKQKWRILKGIPSFSHTTQKHIIMACLALHNFVRDSNLRDKEFERCDADEDYLLEDTSDTSDDESEDAENDDTMNTIRTRIADALISARGG
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0599400 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os09g26280 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0599400 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0013820 | SBH | 0.0 | 0.0 | 1.394586 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0013790 | SBH | 0.000000 | 0.0 | 1.163198 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0013730 | SBH | 0.000000 | 0.0 | 1.965034 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0013540 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0013850 | SBH | 0.0 | 0.0 | 3.842129 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0352300 | RBH | 0 | 0 | 0.0543065 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0364900 | RBH | 0 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0013900 | SBH | 0.000000 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0013980 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0013610 | SBH | 0.000000 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0013460 | SBH | 0.0 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0013780 | SBH | 0.000000 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G013610 | SBH | 0.000000 | 0.0 | 0.866278 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0013810 | SBH | 0.0 | 0.0 | 0.000000 |
