Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os09g26280 | OGI:11010070 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr09:15880529-15881668 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGGGCGCGGCTTCCCTCCTCCCGCAACCGGCCAGGGGCGCGGCTGCCCGCCTCCTGCTGCCGGTCAGTGGCGCGGCCAGGGGCGCGGCTGCCCGCCTCCCGCTGCCGGAGCCGCCCTGCACCCGCCTCCCGCTGCCGGAGCAGCCCTGGGGCACGGCTGCCCGCCTCCCGCTGTCGGAGCCGTCCTGGGGCACGGCAGCCCTGCCGCCGGAGCCGCCGTGGGGCGCGGCTGCTCACCCGCCGGCGCCGCACTGGGGCGCGGGTCCCAGCCGACCGGCGCTGCCCAGCAGCAAGCTCGTCCCCCGCGTACTGGATGATAGAAGAGCTTTTCCCCATTTCAAAGGTTGTATTGGTGCTCTTGATGAAACTCATATCCGTGTGTCATTGTCACCTGATGAGCAAATTAGATATATTGGAAAAACTGGAATTCCCACTCAAAATGTGCTTGCCGTTTGTGACTTTGACATGCATTTTACTTATGTTGCAACGGGTCAACCGGGAGCTATGCATGACACAAGTGTTTTATACAATGCATTAAGAGTGGATGAAAAATTCTTCCCTCATCCTCCACAAGGTACCACACTTGTATTATGCTCTCTATTTGTGCTAACTGTGCATGTGTTACTAAAATGTATCAATAATCATACTATGCTATCTTTTGTAGGCAAATACTATGTTGTTGACGCAGGATATCCTAATCGTCCTGGTTATCTTGCTCCATACAAGGGTGAGAGATACCATTTACCAGAGTGGCACAGAGGTATGGAACCCAATACTCCAATGGAAAAATTCAATCGTGTGCACTCTTCCATCCGCAATGTTATTGAGCGATCATTTGGATTACTAAAAATGAAGTGGCAAATTCTGTACAAGATGCCGTGCTACCCCATGTACAAGCAAAAAATGATTGTTGAGGCTGCTATGGTCCTTCATAATTACATTCGTGAGCATGGAGGTGAGGATCCTGATTTTGCTAGGTTTGATCGTGACCCTAATTTTATTCCAACAATACCAGAACGGTACAACAAATACGCAGTTCCTCGAACGGCATGTGATGAGTCAACTCCCGAAAGAAGTGCAGGAACTATGGATCTCTTCCGTGATGAACTAGCCACCGCTTTATCAATTTCTTGGCGCTAG
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| CDS seq | ATGGGCGCGGCTTCCCTCCTCCCGCAACCGGCCAGGGGCGCGGCTGCCCGCCTCCTGCTGCCGGTCAGTGGCGCGGCCAGGGGCGCGGCTGCCCGCCTCCCGCTGCCGGAGCCGCCCTGCACCCGCCTCCCGCTGCCGGAGCAGCCCTGGGGCACGGCTGCCCGCCTCCCGCTGTCGGAGCCGTCCTGGGGCACGGCAGCCCTGCCGCCGGAGCCGCCGTGGGGCGCGGCTGCTCACCCGCCGGCGCCGCACTGGGGCGCGGGTCCCAGCCGACCGGCGCTGCCCAGCAGCAAGCTCGTCCCCCGCGTACTGGATGATAGAAGAGCTTTTCCCCATTTCAAAGGTTGTATTGGTGCTCTTGATGAAACTCATATCCGTGTGTCATTGTCACCTGATGAGCAAATTAGATATATTGGAAAAACTGGAATTCCCACTCAAAATGTGCTTGCCGTTTGTGACTTTGACATGCATTTTACTTATGTTGCAACGGGTCAACCGGGAGCTATGCATGACACAAGTGTTTTATACAATGCATTAAGAGTGGATGAAAAATTCTTCCCTCATCCTCCACAAGGCAAATACTATGTTGTTGACGCAGGATATCCTAATCGTCCTGGTTATCTTGCTCCATACAAGGGTGAGAGATACCATTTACCAGAGTGGCACAGAGGTATGGAACCCAATACTCCAATGGAAAAATTCAATCGTGTGCACTCTTCCATCCGCAATGTTATTGAGCGATCATTTGGATTACTAAAAATGAAGTGGCAAATTCTGTACAAGATGCCGTGCTACCCCATGTACAAGCAAAAAATGATTGTTGAGGCTGCTATGGTCCTTCATAATTACATTCGTGAGCATGGAGGTGAGGATCCTGATTTTGCTAGGTTTGATCGTGACCCTAATTTTATTCCAACAATACCAGAACGGTACAACAAATACGCAGTTCCTCGAACGGCATGTGATGAGTCAACTCCCGAAAGAAGTGCAGGAACTATGGATCTCTTCCGTGATGAACTAGCCACCGCTTTATCAATTTCTTGGCGCTAG
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| Protein seq | MGAASLLPQPARGAAARLLLPVSGAARGAAARLPLPEPPCTRLPLPEQPWGTAARLPLSEPSWGTAALPPEPPWGAAAHPPAPHWGAGPSRPALPSSKLVPRVLDDRRAFPHFKGCIGALDETHIRVSLSPDEQIRYIGKTGIPTQNVLAVCDFDMHFTYVATGQPGAMHDTSVLYNALRVDEKFFPHPPQGKYYVVDAGYPNRPGYLAPYKGERYHLPEWHRGMEPNTPMEKFNRVHSSIRNVIERSFGLLKMKWQILYKMPCYPMYKQKMIVEAAMVLHNYIREHGGEDPDFARFDRDPNFIPTIPERYNKYAVPRTACDESTPERSAGTMDLFRDELATALSISWR |
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| Function | Putative nuclease HARBI1 [UniProtKB/Swiss-Prot:B0BN95] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os09g26280 | LOC_Os09g26280.1 | Chr09 | 15880529 | 15881668 | + | MSU_osa1r7 | ||
| CDS seq | ATGGGCGCGGCTTCCCTCCTCCCGCAACCGGCCAGGGGCGCGGCTGCCCGCCTCCTGCTGCCGGTCAGTGGCGCGGCCAGGGGCGCGGCTGCCCGCCTCCCGCTGCCGGAGCCGCCCTGCACCCGCCTCCCGCTGCCGGAGCAGCCCTGGGGCACGGCTGCCCGCCTCCCGCTGTCGGAGCCGTCCTGGGGCACGGCAGCCCTGCCGCCGGAGCCGCCGTGGGGCGCGGCTGCTCACCCGCCGGCGCCGCACTGGGGCGCGGGTCCCAGCCGACCGGCGCTGCCCAGCAGCAAGCTCGTCCCCCGCGTACTGGATGATAGAAGAGCTTTTCCCCATTTCAAAGGTTGTATTGGTGCTCTTGATGAAACTCATATCCGTGTGTCATTGTCACCTGATGAGCAAATTAGATATATTGGAAAAACTGGAATTCCCACTCAAAATGTGCTTGCCGTTTGTGACTTTGACATGCATTTTACTTATGTTGCAACGGGTCAACCGGGAGCTATGCATGACACAAGTGTTTTATACAATGCATTAAGAGTGGATGAAAAATTCTTCCCTCATCCTCCACAAGGCAAATACTATGTTGTTGACGCAGGATATCCTAATCGTCCTGGTTATCTTGCTCCATACAAGGGTGAGAGATACCATTTACCAGAGTGGCACAGAGGTATGGAACCCAATACTCCAATGGAAAAATTCAATCGTGTGCACTCTTCCATCCGCAATGTTATTGAGCGATCATTTGGATTACTAAAAATGAAGTGGCAAATTCTGTACAAGATGCCGTGCTACCCCATGTACAAGCAAAAAATGATTGTTGAGGCTGCTATGGTCCTTCATAATTACATTCGTGAGCATGGAGGTGAGGATCCTGATTTTGCTAGGTTTGATCGTGACCCTAATTTTATTCCAACAATACCAGAACGGTACAACAAATACGCAGTTCCTCGAACGGCATGTGATGAGTCAACTCCCGAAAGAAGTGCAGGAACTATGGATCTCTTCCGTGATGAACTAGCCACCGCTTTATCAATTTCTTGGCGCTAG
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| Protein seq | MGAASLLPQPARGAAARLLLPVSGAARGAAARLPLPEPPCTRLPLPEQPWGTAARLPLSEPSWGTAALPPEPPWGAAAHPPAPHWGAGPSRPALPSSKLVPRVLDDRRAFPHFKGCIGALDETHIRVSLSPDEQIRYIGKTGIPTQNVLAVCDFDMHFTYVATGQPGAMHDTSVLYNALRVDEKFFPHPPQGKYYVVDAGYPNRPGYLAPYKGERYHLPEWHRGMEPNTPMEKFNRVHSSIRNVIERSFGLLKMKWQILYKMPCYPMYKQKMIVEAAMVLHNYIREHGGEDPDFARFDRDPNFIPTIPERYNKYAVPRTACDESTPERSAGTMDLFRDELATALSISWR
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g38660 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0029410 | SBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0029210 | SBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0029210 | SBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_09g0011980 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0029150 | SBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_09G0264600 | SBH | 4.799673 | 1.3773975 | 2.9246965 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0028840 | SBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_09G0295600 | SBH | 0.017001 | 0 | 0.033407 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0029020 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0006170 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0006160 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0006190 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0006170 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G028710 | SBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0029220 | SBH | 0.0 | 0.0 | 0.0 |
