Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsPr106_11g0013850 | OGI:11048770 | 16/16 | PR 106 | Os127742RS1 | Gramene(+IsoSeq) | Chr11:19025138-19027372 | ||||||||
| Gene Symbol | MSL39, OsMSL39 | ||||||||||
| DNA seq | ttacctgttgtaaacttcatctacaatggtgtcacggagtgtattcattgccgccgctctgttaggtacatcgttccagccacgtagggtggagcgtctgaaacgatggggtatccattgtacaatgggttctgtgtaaggaaacacatatcggagctgttaattctaaagttatgtagaactaatgcacaatgtatgatcttggtatggtcgtcactcctagggaaataaggtatttccctcaggattctcactggcttttgataactccaaatgttctttccactatgttacgctacgaactgtgcatgtagttaaaagtatcttcctttccatggggcaaggctgctcccttattacccgcaaattcatccaagtggtaccaaacatgtgggtaaggtggtaggaatctataccggctagtatatcccgagtccacaaggaaatatttccctgcaccaacaaattagcgaagtgattatttctggaaaatggacactaacatttgcaattgttgaacctaaaattcaaaacataccccatggtagccttgggaaaacaaagggatagccccgtactgcttctgttaggttgatcatgcacagaccctagccacccaacatctgcaaaaatgacacggtcgtccaatccaatagcgacgaacattcctagaagttatgtggtgacggttcctgtgttgaatggaatcatccactgccacaatgcaatgaatgtgtgctccatccactgcaccagccgcaccagcaaatggctggaattcttcatcattctggacacgataatgaactcttgcaaagttaggatctaccggcttatttatgtcagcagcataaactgcattaagcactctatggatgtacttagagacagtagacccagatcttaccatcctattattagtggccctatttgaattgcccccgccatgatgtacaaaaatattccaagtgcttccattgggcatacctcaattgatccatgaagattgtatcgattagtaagtaacCCAAACAGAGCCatggatttgatttggcatcagacggaaaattgcttggcagtgagatgggttttccattgtctccatcacccattccattccagattgttgcgatacccaacgtgctgccctcacacgtagctttgccttcaaagccgcaaccaacatgtccagaaggagtcctcctcctcactgtagtagccatccttagaaccatatgatctttcagaagtgctcatgttcctatatcaatacatgacaaagtaaatcatggttaagttagaagcctatgtgctgcaatgacaaaatgattctgagtaggtagaaatcgaaacgttagttcacattattaaagtactgcaaaaaaacagtgattaaaataggcaacatattagtgcaatgcaattgtaaattaagttagcaaaccacaaaaagttagctccttgtacaaaataagggcaatcaacaaaggcaaataaatatcagctcaacataatttattcaagcactgcagctcacatagttcaaattaatggtgccgaaattgttcaagaagccactcaacttagggcacctttgaattggaggattgtcataggaatttttgaggatttaatttcctaaggaatttttcctatgaaaccctttgattcataggaaagtataggaaattttccttaggattgcattcctatagctcaatttcataggaaaataagcaagaggttcaacctcttggaaactatcctttgctttgtttgtttcctatggtgctatcAaaaagggaccctcttcatatttcttgtgtttttcattcctataggattaggaaaacataccacttcaattcctacgTttttcctattcctgtgtttttcctatcctgtgtttcaaatgggcccttaaataaggcctacaacaagcacgatgctcgatatgaatcggagcaagttattaaacagacatcacagggaaattaaaagatgcatcacaaacagaacatggcaccaaagcgacataagcaagcagaagcagtgctaaaacactgctgcaccatcagcaccaccattagcaccgtcgctaccatcatcgtcatgaggactgaacctcttgtaccagccctcaacatggcctgagcaggttggtggtggcggtggagcaaacaacagggggtcaggagtgaggtctggtgcaccatgcagctggatgaagtacat
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| CDS seq | atgtacttcatccagctgcatggtgcaccagacctcactcctgaccccctgttgtttgctccaccgccaccaccaacctgctcaggccatgttgagggctggtacaagaggttcagtcctcatgacgatgatggtagcgacggtgctaatggtggtgctgatggtgcagcagtgaacatgagcacttctgaaagatcatatggttctaaggatggctactacagtgaggaggaggactccttctggacattttatgctgctgacataaataagccggtagatcctaactttgcaagagttcattatcgtgtccagaatgatgaagaattccagccatttgctggtgcggctggtgcagtggatggagcacacattcattgcattgtggcagtggatgattccattcaacacaggaaccgtcaccacataacttctaggaataagcagtacggggctatccctttgttttcccaaggctaccatgggctccgatatgtgtttccttacacagaacccattgtacaatggataccccatcgtttcagacgctccaccctacgtggctggaacgatgtacctaacagagcggcggcaatgaatacactccgtgacaccattgtagatgaagtttacaacaggtaa
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| Protein seq | MYFIQLHGAPDLTPDPLLFAPPPPPTCSGHVEGWYKRFSPHDDDGSDGANGGADGAAVNMSTSERSYGSKDGYYSEEEDSFWTFYAADINKPVDPNFARVHYRVQNDEEFQPFAGAAGAVDGAHIHCIVAVDDSIQHRNRHHITSRNKQYGAIPLFSQGYHGLRYVFPYTEPIVQWIPHRFRRSTLRGWNDVPNRAAAMNTLRDTIVDEVYNR |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsPr106_11g0013850 | OsPr106_11g0013850.01 | Chr11 | 19025138 | 19027372 | - | NAM | ||
| CDS seq | atgtacttcatccagctgcatggtgcaccagacctcactcctgaccccctgttgtttgctccaccgccaccaccaacctgctcaggccatgttgagggctggtacaagaggttcagtcctcatgacgatgatggtagcgacggtgctaatggtggtgctgatggtgcagcagtgaacatgagcacttctgaaagatcatatggttctaaggatggctactacagtgaggaggaggactccttctggacattttatgctgctgacataaataagccggtagatcctaactttgcaagagttcattatcgtgtccagaatgatgaagaattccagccatttgctggtgcggctggtgcagtggatggagcacacattcattgcattgtggcagtggatgattccattcaacacaggaaccgtcaccacataacttctaggaataagcagtacggggctatccctttgttttcccaaggctaccatgggctccgatatgtgtttccttacacagaacccattgtacaatggataccccatcgtttcagacgctccaccctacgtggctggaacgatgtacctaacagagcggcggcaatgaatacactccgtgacaccattgtagatgaagtttacaacaggtaa
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| Protein seq | MYFIQLHGAPDLTPDPLLFAPPPPPTCSGHVEGWYKRFSPHDDDGSDGANGGADGAAVNMSTSERSYGSKDGYYSEEEDSFWTFYAADINKPVDPNFARVHYRVQNDEEFQPFAGAAGAVDGAHIHCIVAVDDSIQHRNRHHITSRNKQYGAIPLFSQGYHGLRYVFPYTEPIVQWIPHRFRRSTLRGWNDVPNRAAAMNTLRDTIVDEVYNR
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 3.842129 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0477400 | SBH | 0.245371 | 0.729957 | 2.728482 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g28910 | SBH | 0.000000 | 0.283810 | 0.299392 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0477400 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0013820 | SBH | 0.0 | 0.0 | 1.394586 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0013790 | SBH | 0.000000 | 0.0 | 1.163198 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0013730 | SBH | 0.000000 | 0.0 | 1.965034 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0013540 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0257200 | SBH | 0.135751 | 0.1970625 | 5.0929425 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0013830 | SBH | 0.0 | 0.0 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0270600 | RBH | 0.044895 | 0 | 1.0621255 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0013900 | SBH | 0.000000 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0013980 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0013610 | SBH | 0.000000 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0013460 | SBH | 0.0 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0013780 | SBH | 0.000000 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G013610 | SBH | 0.000000 | 0.0 | 0.866278 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0013810 | RBH | 0.0 | 0.0 | 0.000000 |
