Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsARC_12g0006640 | OGI:12014740 | 16/16 | ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | Chr12:5391463-5393727 | ||||||||
| Gene Symbol | MSL41, OsMSL41 | ||||||||||
| DNA seq | ATGGCTTTTAATTTCGACTGGAGCCGGAGCCGAAGCCGGAGCCGCTGTTCCCAAACGTCTCGGCTCCACCGCCCAGCTCCGCAGAAGCCACGCGGAAGCCGGAGCCCATTTGTGCCCCAGCTTCTCCTGCTCCAGGAGCCCAATTCGGCTCAGCTCCACCACCGCTCCTCCCGACCTAGCGCCGCCGCCGCCGCCGCCGCCCTGCACCGTCTCCCCGCCGGCCGCCTCCACCCGCACCGCGCGGTGCCCCCCTCATCACCAAGAACGGAAGGTATCCATCCATCCATCCATCTATTATTCGTCCCGCACATGAATTCCCCCCTTTATTTTCTGAGAGGCACACCCTAAATTTCCAGCAGCAGGAACAAAATTATCATACTTGATTTCTTGCAAAGAAAGAATGATGGATTAATTCGTCTTTGTGCTTGATGCTTCTTGCTTGTAGTGGTGGTAGCTAGTAGGCTAGAATTGTTGTTTGAGTTTCGTGCCATCATCATGTTTAGGGGGTGTGTGTGTAGCAGATTGAAGTGGTTCTTGGTTCCTGTTCCCAACAGGTCCAAGTGATGAGCCTACTAAAGGGGAGCATTTCAGAATTTCCTTTTGGATTTTTGTTTCACTTGTTACTTTTCTCATGTGTATGGTTTTGCTTACTTATATGCTGCTTTGCGCGATTATTGTGCATTTGAATGGAGGTTTACCTTTGGACTTGATAGAGATCGGATTATGGTATCAAAAGAAATGAAGTTCTAGTTATTGTTCTCAATTGATCTGAACAGGACATATCACAATTTTTTTAGTTACAGTTGTTTGATTCTTCTTTCCTTTGGTTTCAAGAGTGTACATGTTTGAAAACATAGCCTAGAAAGACCTTCCATCTCTGCAACCTTTCTTGTTTTCGTAGTTCAGGGTGAAACCTGAAATATCTTTGTATGGTAGTGTTGTCTTGGGACAATCTTTTGAGAGTATATGACCATCAGTTCATGGATTTAATCTCTGTTTTGGTGTCGAGTTCCACCACTTCTTGCTTATACACAAATAGTTCATCATGACTGTATGATGCTAAATTGCAGACTCTAATCTATTTTATTAGTGCAGATGACAGAAGCTGCTGAGTGGAATGATGAGAACACTAAAATTATCTGTGAACTTTATGCTGAACAAGTTCGGGCTGGAAATCGACCAAGTACTCATCTCAACAGCATTGGATACAGCCAAGTTGCATTGAAGTTTCAGCAGAGAACTCATTTGCTTTACACCAAGAGACAACTTAAAAACAAATGGGATAAACTTAGGAATGAGTACACCATCTGGAAGAAATTGCTTATAAGAGGGTCAGGTTTAGGTTGGGACAGTACAAAAGGAACAATTGCAGCTGACGAAAACTGGTGGAACAAGACAAATACAGTATGCAATAGTTGCGCTTTCTCGATATCTTCTTACCATGTGAACTATGCTATCAGTTGATACCTTTTTTTTTACAGGAGTTGCCAGGTGCAAAAAAATTCCGCAAAGCTGGAATGAAAAATCTGGATCATTTGAGAGTGATGTTTGATGATATTGCCAGTAACGGTGTGGATCATACACCGGTGCCAGCAACAAGTTCGCCATCTACTCTGGAAAGTCCTGTAAATGTTGCTAATCTTGACGGACTAGACAATGACATGGAAGATAATGATGACACTCAGCTGGAAGAGGAGTCTCCCTTGAATCGGAACAAGAAAAGACCTCGCCATGCTAATAATGCTAACAAGAACAAGAGTAGTAGGACTGAAATTGCTTTGCTCATGCAAGCTCAATTGAAGGGTATGGCAGATTTGGCCGAGAAAGCACAGGCCACTTTTGAGAATTTCACCTCCCTTGTTGGCTCTCTAGGATCCAGCATTCAGTATGTTATGACATTGGTTCAAGAATGTGGAGCACGGAGTGGAAGCGACGAGCATTTCATTGCAACTGAGTTGTTTGTCAGTAGAGAACAAAGAGAAATGTTCTTGACTCTGAGTACCGCTGAGGAGCGTCTAGAATGGCTTAGAAGAAAGTATAAAGCTAAGTATGGTGCTTAAGAAATATGATCGCGGAGCTTCCTGACATCGTTTCACTTGGCTCTTGTTGCCTTAGGTATTCAAGACTATTTTTCTTTTCTTTTGTATCGGATGCTAGCATGTATTAGATCCTGACAAGTGTGATCGTCAACCTGTGGGTGTAAAGGCTGATCTATGAATGTACAATCATCGTTTAGCATTAGCTGTTTATTTCTTGCTCATTTTG
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| CDS seq | ATGGCTTTTAATTTCGACTGGAGCCGGAGCCGAAGCCGGAGCCGCTGTTCCCAAACGTCTCGGCTCCACCGCCCAGCTCCGCAGAAGCCACGCGGAAGCCGGAGCCCATTTGTGCCCCAGCTTCTCCTGCTCCAGGAGCCCAATTCGGCTCAGCTCCACCACCGCTCCTCCCGACCTAGCGCCGCCGCCGCCGCCGCCGCCCTGCACCGTCTCCCCGCCGGCCGCCTCCACCCGCACCGCGCGGTGCCCCCCTCATCACCAAGAACGGAAGGTGCAAAAAAATTCCGCAAAGCTGGAATGAAAAATCTGGATCATTTGAGAGTGATGTTTGATGATATTGCCAGTAACGGTGTGGATCATACACCGGTGCCAGCAACAAGTTCGCCATCTACTCTGGAAAGTCCTGTAAATGTTGCTAATCTTGACGGACTAGACAATGACATGGAAGATAATGATGACACTCAGCTGGAAGAGGAGTCTCCCTTGAATCGGAACAAGAAAAGACCTCGCCATGCTAATAATGCTAACAAGAACAAGAGTAGTAGGACTGAAATTGCTTTGCTCATGCAAGCTCAATTGAAGGGTATGGCAGATTTGGCCGAGAAAGCACAGGCCACTTTTGAGAATTTCACCTCCCTTGTTGGCTCTCTAGGATCCAGCATTCAGTATGTTATGACATTGGTTCAAGAATGTGGAGCACGGAGTGGAAGCGACGAGCATTTCATTGCAACTGAGTTGTTTGTCAGTAGAGAACAAAGAGAAATGTTCTTGACTCTGAGTACCGCTGAGGAGCGTCTAGAATGGCTTAGAAGAAAGTATAAAGCTAAGTATGGTGCT
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| Protein seq | MAFNFDWSRSRSRSRCSQTSRLHRPAPQKPRGSRSPFVPQLLLLQEPNSAQLHHRSSRPSAAAAAAALHRLPAGRLHPHRAVPPSSPRTEGAKKFRKAGMKNLDHLRVMFDDIASNGVDHTPVPATSSPSTLESPVNVANLDGLDNDMEDNDDTQLEEESPLNRNKKRPRHANNANKNKSSRTEIALLMQAQLKGMADLAEKAQATFENFTSLVGSLGSSIQYVMTLVQECGARSGSDEHFIATELFVSREQREMFLTLSTAEERLEWLRRKYKAKYGA |
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| Function | Zinc finger CCCH domain-containing protein 43 [UniProtKB/Swiss-Prot:Q5Z5Q3] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsARC_12g0006640 | OsARC_12g0006640.01 | Chr12 | 5391463 | 5393727 | + | NAM | ||
| CDS seq | ATGGCTTTTAATTTCGACTGGAGCCGGAGCCGAAGCCGGAGCCGCTGTTCCCAAACGTCTCGGCTCCACCGCCCAGCTCCGCAGAAGCCACGCGGAAGCCGGAGCCCATTTGTGCCCCAGCTTCTCCTGCTCCAGGAGCCCAATTCGGCTCAGCTCCACCACCGCTCCTCCCGACCTAGCGCCGCCGCCGCCGCCGCCGCCCTGCACCGTCTCCCCGCCGGCCGCCTCCACCCGCACCGCGCGGTGCCCCCCTCATCACCAAGAACGGAAGGTGCAAAAAAATTCCGCAAAGCTGGAATGAAAAATCTGGATCATTTGAGAGTGATGTTTGATGATATTGCCAGTAACGGTGTGGATCATACACCGGTGCCAGCAACAAGTTCGCCATCTACTCTGGAAAGTCCTGTAAATGTTGCTAATCTTGACGGACTAGACAATGACATGGAAGATAATGATGACACTCAGCTGGAAGAGGAGTCTCCCTTGAATCGGAACAAGAAAAGACCTCGCCATGCTAATAATGCTAACAAGAACAAGAGTAGTAGGACTGAAATTGCTTTGCTCATGCAAGCTCAATTGAAGGGTATGGCAGATTTGGCCGAGAAAGCACAGGCCACTTTTGAGAATTTCACCTCCCTTGTTGGCTCTCTAGGATCCAGCATTCAGTATGTTATGACATTGGTTCAAGAATGTGGAGCACGGAGTGGAAGCGACGAGCATTTCATTGCAACTGAGTTGTTTGTCAGTAGAGAACAAAGAGAAATGTTCTTGACTCTGAGTACCGCTGAGGAGCGTCTAGAATGGCTTAGAAGAAAGTATAAAGCTAAGTATGGTGCT
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| Protein seq | MAFNFDWSRSRSRSRCSQTSRLHRPAPQKPRGSRSPFVPQLLLLQEPNSAQLHHRSSRPSAAAAAAALHRLPAGRLHPHRAVPPSSPRTEGAKKFRKAGMKNLDHLRVMFDDIASNGVDHTPVPATSSPSTLESPVNVANLDGLDNDMEDNDDTQLEEESPLNRNKKRPRHANNANKNKSSRTEIALLMQAQLKGMADLAEKAQATFENFTSLVGSLGSSIQYVMTLVQECGARSGSDEHFIATELFVSREQREMFLTLSTAEERLEWLRRKYKAKYGA
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0207200 | RBH | 0.153832 | 0.211287 | 0.503558 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g10550 | RBH | 0.100796 | 0.137693 | 0.125598 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0207200 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0006660 | RBH | 0.000000 | 0.0 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0006740 | RBH | 0.000000 | 0.0 | 0.305302 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0006740 | RBH | 0.754918 | 0.0 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0084100 | RBH | 1.77611 | 2.3140745 | 1.4825045 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0089600 | RBH | 1.8967785 | 2.7245595 | 5.276227 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G006500 | RBH | 0.000000 | 0.0 | 0.668839 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
