Basic Info

Gene ID OGI # | Score   Accession | Assembly | Annotation Location Links
OsMH63_11G0375400 OGI:11071420 | 4/16 Minghui 63 | MH63RS3 | HZAU Chr11:28390649-28391158
Gene Symbol -
DNA seq

TCACGGGTTGACGTAGACGTCGAGCTCAAGGATGGCGTTGGGGTGGTCGAGGCTGACCGTCTTCCAGAGCACGTACCCGGACGCCATCCTGAACTCCCCCGTGCCGCCGACCACCGACAGCTCCCTCACCGGCGCGGCGATGTCGTCCCTCCCGACGACGGTGACCGAGCTGCCGGCGAACGGGCCCGACGTCAGCACCACCTCCATGGTCACCAGCAGCTCCGGGTTCCCCGACGACGCCCAGATGTACTGCCCCTTGGCTCGCCCCACGGCCGCCGACGACCGGCTCGCCGCCGCCGTCAGCACGTCGTCGATCACGATCGTGTCGCCGAAGTGGCCCCGCGGCCCGTTCAGCACCTGCACCGCCGTCGGCGTCGGCCCCGTCAGCGTGTCGTGCATGAAGAAGTGCAGGTGAGCTGACGCCGCCTCCGCCGCCGGCAGCAGCCCGCCGCCGCCGGCGAGCAGCAGGAGGACGAGCGCGAACGCCGAGGAGAGCTTGCTGCTTGCCAT

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CDS seq

ATGGCAAGCAGCAAGCTCTCCTCGGCGTTCGCGCTCGTCCTCCTGCTGCTCGCCGGCGGCGGCGGGCTGCTGCCGGCGGCGGAGGCGGCGTCAGCTCACCTGCACTTCTTCATGCACGACACGCTGACGGGGCCGACGCCGACGGCGGTGCAGGTGCTGAACGGGCCGCGGGGCCACTTCGGCGACACGATCGTGATCGACGACGTGCTGACGGCGGCGGCGAGCCGGTCGTCGGCGGCCGTGGGGCGAGCCAAGGGGCAGTACATCTGGGCGTCGTCGGGGAACCCGGAGCTGCTGGTGACCATGGAGGTGGTGCTGACGTCGGGCCCGTTCGCCGGCAGCTCGGTCACCGTCGTCGGGAGGGACGACATCGCCGCGCCGGTGAGGGAGCTGTCGGTGGTCGGCGGCACGGGGGAGTTCAGGATGGCGTCCGGGTACGTGCTCTGGAAGACGGTCAGCCTCGACCACCCCAACGCCATCCTTGAGCTCGACGTCTACGTCAACCCGTGA

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Protein seq

MASSKLSSAFALVLLLLAGGGGLLPAAEAASAHLHFFMHDTLTGPTPTAVQVLNGPRGHFGDTIVIDDVLTAAASRSSAAVGRAKGQYIWASSGNPELLVTMEVVLTSGPFAGSSVTVVGRDDIAAPVRELSVVGGTGEFRMASGYVLWKTVSLDHPNAILELDVYVNP

Function Pterocarpan synthase 1 [UniProtKB/Swiss-Prot:I1JNN8]

Transcripts

Gene Transcript Chromosome Start End Strand Source
OsMH63_11G0375400 OsMH63_11T0375400.1 Chr11 28390649 28391158 - maker
CDS seq

ATGGCAAGCAGCAAGCTCTCCTCGGCGTTCGCGCTCGTCCTCCTGCTGCTCGCCGGCGGCGGCGGGCTGCTGCCGGCGGCGGAGGCGGCGTCAGCTCACCTGCACTTCTTCATGCACGACACGCTGACGGGGCCGACGCCGACGGCGGTGCAGGTGCTGAACGGGCCGCGGGGCCACTTCGGCGACACGATCGTGATCGACGACGTGCTGACGGCGGCGGCGAGCCGGTCGTCGGCGGCCGTGGGGCGAGCCAAGGGGCAGTACATCTGGGCGTCGTCGGGGAACCCGGAGCTGCTGGTGACCATGGAGGTGGTGCTGACGTCGGGCCCGTTCGCCGGCAGCTCGGTCACCGTCGTCGGGAGGGACGACATCGCCGCGCCGGTGAGGGAGCTGTCGGTGGTCGGCGGCACGGGGGAGTTCAGGATGGCGTCCGGGTACGTGCTCTGGAAGACGGTCAGCCTCGACCACCCCAACGCCATCCTTGAGCTCGACGTCTACGTCAACCCGTGA

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Protein seq

MASSKLSSAFALVLLLLAGGGGLLPAAEAASAHLHFFMHDTLTGPTPTAVQVLNGPRGHFGDTIVIDDVLTAAASRSSAAVGRAKGQYIWASSGNPELLVTMEVVLTSGPFAGSSVTVVGRDDIAAPVRELSVVGGTGEFRMASGYVLWKTVSLDHPNAILELDVYVNP

Event Type Chromosome Start End Strand Alternative mRNAs Total mRNAs Source

Expression

Leaf Root Panicle
FPKM 75.916523 0.7571335 6.4178615

Homologues

Genome & Annotation Homologs Type Expression(FPKM)
Leaf Root Panicle
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) OsNip_11g0645400 SBH 0.155308 0.0 0.0
Nipponbare | IRGSP 1.0 | MSU LOC_Os11g42550 SBH 0.159956 0.0 0.0
Nipponbare | IRGSP 1.0 | RAP-db Os11g0645400 SBH None None None
Azucena | AzucenaRS1 | Gramene(+IsoSeq) OsAzu_11g0021930 SBH 0.085846 57.595741 23.025616
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) OsKeNa_11g0021900 SBH 0.0 1.251929 0.0
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) OsCMeo_11g0021740 SBH 0.0 23.010496 9.878263
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) OsARC_11g0021240 SBH 0.0 0.976822 None
PR 106 | Os127742RS1 | Gramene(+IsoSeq) OsPr106_11g0021750 SBH 0.0 25.048176 17.467442
Minghui 63 | MH63RS3 | HZAU OsMH63_11G0385400 RBH 374.056091 0.1341265 0.132906
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) OsIR64_11g0022320 SBH 0.0 2.555636 1.250390
Zhenshan 97 | ZS97RS3 | HZAU OsZS97_11G0405300 SBH 273.0937345 0.0344955 0.7231875
LIMA | Os127564RS1 | Gramene(+IsoSeq) OsLima_11g0021300 RBH 0.0 0.0 None
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) OsKYG_11g0021450 RBH 0.0 0.0 None
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) OsGoSa_11g0021850 SBH 0.0 7.241103 None
LIU XU | Os125827RS1 | Gramene(+IsoSeq) OsLiXu_11g0021440 SBH 0.0 0.0 0.567018
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) OsLaMu_11g0021610 SBH 0.0 12.752687 None
N22 | OsN22RS2 | Gramene(+IsoSeq) OsN22_11G021660 SBH 0.0 8.260716 3.062310
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) OsNaBo_11g0021330 RBH 0.0 0.000000 0.379267
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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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