Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os11g0645400 | OGI:11073000 | 16/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr11:25617774-25618559 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATTCCGTGTCAGTCATCAGTGTTCGCCATGGCAAGCAGCAGCAAGCTCTCCTCGGCGTTCGCGCTCGCCGTCGTCGTCCTGCTGCTCGCCGGCGGGGTGATGCCGGCGGCGGAGGCGGCGTCGGCGCACCTGCACTTCTTCATGCACGACACGCTGACGGGGGCGGCGCCGACGGCGGTGCAGGTGGTGAACGGTCCGCGGAGCCACTTCGGCGACACGATCGTGATCGACGACGTGCTGACGGCGGCGGCGAGCCGGTCGTCGGCGGCGGTGGGGCGGGCCAAGGGGCAGTACGTGTGGGCGTCGTCGGGGAACCCGGAGCTGCTGGTGACCATGGAGGTGGTGCTGACGTCGGGGCCGTTCGCCGGCAGCTCGGTCACCGTCGTCGGGAGGGACGACATCGCGGCGCCGGTGAGGGAGCTGTCGGTGGTCGGCGGCACGGGGGAGTTCAGGATGGCGTCCGGCTACGTCCTCTGGAAGACGGTCAGCCTCGACCACCCCAACGCCATCCTCGAGCTCGACGTCTACGTCAACCCCTGAGATCGCCGCCGCCGCCGCCGGCCACCGTGTGCTTGCTTCCGGCGTACGTGGTGGTGGCATGACGTGGCGTGTGCCAGCACACGACACATGTCGCAGCTGCCACGGATGCTACACTACCTTACACTATACTACTATACTATACTAGTACTGCCACCCAGCCAGTGACGAATAATATGGACAAGTCCATTCCATGTGTTGTTAGTTGTTACCGTGGCGTGTAATAATTCATGAGATTTGTCAATTATC
More
|
||||||||||
| CDS seq | ATGGCAAGCAGCAGCAAGCTCTCCTCGGCGTTCGCGCTCGCCGTCGTCGTCCTGCTGCTCGCCGGCGGGGTGATGCCGGCGGCGGAGGCGGCGTCGGCGCACCTGCACTTCTTCATGCACGACACGCTGACGGGGGCGGCGCCGACGGCGGTGCAGGTGGTGAACGGTCCGCGGAGCCACTTCGGCGACACGATCGTGATCGACGACGTGCTGACGGCGGCGGCGAGCCGGTCGTCGGCGGCGGTGGGGCGGGCCAAGGGGCAGTACGTGTGGGCGTCGTCGGGGAACCCGGAGCTGCTGGTGACCATGGAGGTGGTGCTGACGTCGGGGCCGTTCGCCGGCAGCTCGGTCACCGTCGTCGGGAGGGACGACATCGCGGCGCCGGTGAGGGAGCTGTCGGTGGTCGGCGGCACGGGGGAGTTCAGGATGGCGTCCGGCTACGTCCTCTGGAAGACGGTCAGCCTCGACCACCCCAACGCCATCCTCGAGCTCGACGTCTACGTCAACCCCTGA
More
|
||||||||||
| Protein seq | MASSSKLSSAFALAVVVLLLAGGVMPAAEAASAHLHFFMHDTLTGAAPTAVQVVNGPRSHFGDTIVIDDVLTAAASRSSAAVGRAKGQYVWASSGNPELLVTMEVVLTSGPFAGSSVTVVGRDDIAAPVRELSVVGGTGEFRMASGYVLWKTVSLDHPNAILELDVYVNP |
||||||||||
| Function | Dirigent protein 21 [UniProtKB/Swiss-Prot:Q9SS03] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os11g0645400 | Os11t0645400-01 | Chr11 | 25617774 | 25618559 | + | irgsp1_rep | ||
| CDS seq | ATGGCAAGCAGCAGCAAGCTCTCCTCGGCGTTCGCGCTCGCCGTCGTCGTCCTGCTGCTCGCCGGCGGGGTGATGCCGGCGGCGGAGGCGGCGTCGGCGCACCTGCACTTCTTCATGCACGACACGCTGACGGGGGCGGCGCCGACGGCGGTGCAGGTGGTGAACGGTCCGCGGAGCCACTTCGGCGACACGATCGTGATCGACGACGTGCTGACGGCGGCGGCGAGCCGGTCGTCGGCGGCGGTGGGGCGGGCCAAGGGGCAGTACGTGTGGGCGTCGTCGGGGAACCCGGAGCTGCTGGTGACCATGGAGGTGGTGCTGACGTCGGGGCCGTTCGCCGGCAGCTCGGTCACCGTCGTCGGGAGGGACGACATCGCGGCGCCGGTGAGGGAGCTGTCGGTGGTCGGCGGCACGGGGGAGTTCAGGATGGCGTCCGGCTACGTCCTCTGGAAGACGGTCAGCCTCGACCACCCCAACGCCATCCTCGAGCTCGACGTCTACGTCAACCCCTGA
More
|
|||||||
| Protein seq | MASSSKLSSAFALAVVVLLLAGGVMPAAEAASAHLHFFMHDTLTGAAPTAVQVVNGPRSHFGDTIVIDDVLTAAASRSSAAVGRAKGQYVWASSGNPELLVTMEVVLTSGPFAGSSVTVVGRDDIAAPVRELSVVGGTGEFRMASGYVLWKTVSLDHPNAILELDVYVNP |
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0645400 | RBH | 0.155308 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g42550 | RBH | 0.159956 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0021930 | RBH | 0.085846 | 57.595741 | 23.025616 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0021900 | RBH | 0.0 | 1.251929 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0021740 | RBH | 0.0 | 23.010496 | 9.878263 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0021240 | RBH | 0.0 | 0.976822 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0021750 | RBH | 0.0 | 25.048176 | 17.467442 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0385400 | RBH | 374.056091 | 0.1341265 | 0.132906 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0022320 | RBH | 0.0 | 2.555636 | 1.250390 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0405300 | RBH | 273.0937345 | 0.0344955 | 0.7231875 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0022100 | RBH | 0.000000 | 0.003922 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0022200 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0021850 | RBH | 0.0 | 7.241103 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0021440 | RBH | 0.0 | 0.0 | 0.567018 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0021610 | RBH | 0.0 | 12.752687 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G021660 | RBH | 0.0 | 8.260716 | 3.062310 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0022140 | RBH | 0.0 | 0.0 | 9.605864 |
