Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_11g0021300 | OGI:11071420 | 4/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr11:27092162-27095496 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | tcacgggttgacgtagacgtcgagctcaaggatggcgttggggtggtcgaggctgaccgtcttccagagcacgtacccggacgccatcctgaactcccccgtgccgccgaccaccgacagctccctcaccggcgcggcgatgtcgtccctcccgacgacggtgaccgagctgccggcgaacgggcccgacgtcagcaccacctccatggtcaccagcagctccgggttccccgacgacgcccagatgtactgccccttggctcgccccacggccgccgacgaccggctcgccgccgccgtcagcacgtcgtcgatcacgatcgtgtcgccgaagtggccccgcggcccgttcagcacctgcaccgccgtcggcgtcggccccgtcagcgtgtcgtgcatgaagaagtgcaggtgagctgacgccgcctccgccgccggcagcagcccgccgccgccggcgagcagcaggaggacgagcgcgaacgccgaggagagcttgctgcttgccatggcgaactgatgacacgataagagatgtgcgtgtgcttaaatagttataaatcgtagccttggcaatgtattaactaattatctgaataattctttgtgataattatctggtggatttaatttgtgacaagattggaggaaacgaacaaaagtacagttgatgcgtcatattttggcaaggctggacgtttctgttttccgtgctgatcattgtacatgatccagtgcattgtcggtgcattggccctgaaaatttaagaaaaataaaaaatgtttcaggttggtctggcccaaattaaatgagcaaattatgattttggcacagtacaagtcgtctatttaatttcttcctatccagtttgaagctttgcattcttaattactagcaattattgtgttttttagcagaaggaaaataagactggagatatgtaattcagataatcacttcttggcaaaaacaataggacaagtaaaaataaactcatccttggcaaacctgctaattcttactcactaatgatcatatgacattgcaatgtacacaacaagaaggaaaaggagaggatccatgtaggtgagtgactatgttctgaacttcttatgggcaaggattaggatatcttgcatgaacttcattgatctctgaaacaatttcctcagagagatggatcctggtggcctgaagaacttctgtaagttgcgaaattttggttgcgccaaaaacagccgatgccacaagggggtgcctcagaacaaacgctgaaagaaacattgacagacacaaggatctgaaagcaacagtaagggaaagcaacttcaaatgcaacaaaaaatgatgagctgacataccaactgctagaatcgctggcgaaatcccatgcttagcagcaatttttatgtattcctgagttaatttataaggaatgcagtgtaagcaattagttaaattacaaggacgagatacaaatcaccagatcaccttcacagcagctttcagtttggggttttgaagattatatctggattcaccctcagagtatcttcctataaagcaggagggacaattatgatgcagtggcgcaaaacagatataaacatgtaagtagtatgtgcaacttcagacctttgaaaagattcattcttgcatctggtgggccgctaccatccgacgagtaatacttcccagaaagtatacccatggccattgggctgtaagctagcaagctgattctgcggttttcatagttcagcaaggaaacctcagtgtcagtttgtacagagaataagtaagtgaccactacatcttgcaaatttctcatcatttcacagaattacataatgaggtggtagtacttgtcagcttcagagataCccagccgaagataacagccagtttcagggatatattatagatacctctcatggtggcagcattctgctagcccagcatcaaaatttcgacatagaaggttatacgagttctgcgaaagaattgaagaaaaaggtatgagcgtgtgctggtacctggtactaaataagatgaattatagaatcagaaaaatggtgtaacacttacttgcacagtcagtatattgttgtgcagttgggaatctctactcagctgaaggaatttcatcaacccataaggtgTttcattgctaaggccaatgtacctaatctaacatcagcagtgaataaacctgctggccataagtaacatttctgataacaatggaacacaaacacccttgcaacataccttgccagcatctatggctcttccaagagctatcagctgctcttccattggaacagacatatactgatgacttggatcatactctgtctctccaaacattgggacgtagctgcaaccacaacatgcctgattaaaacctgaggatgcgaagaaacgcaagatggcaatatagcgaaactatattacagttataggcacgaaaccgagttggacagaccgatcaggccaatgtatctggtaaagatcaatgtaatccactcccagcctgcgcaaactgcaccaacaccccaaggaacacaagatgcactcagtcactcaagtatcaacagaaagatccaatatacaactagaaacaacacagcactagtgaaaaattcacattgccacgagtgcattagtacatcagcatctagtaacaggataattttacaccaatcagcaatcagaatcacagagatatgtcgactaacagagatcatcaaagcatctgcattctgaagttctgaacagaataacagcactagaattgggaagaaaggcattccaattgaccaaccttccatcaatcgcctccccgacattccgcgaatcgagagacgccggccccccgcggatccacgtcatctgcccggacggcccggcgacctatcctaccaatgcagcagcatcaaacgcagcaaaaaaacgagataattcagtttagttcagtgccagcattgcagtgagccagtgaagcagaggctttgaccgttgaccttagtggcgaccacgacgctgtcacgtggggcccagcgagcccgtagccagcggccgaggaactcctcgctgcgcccgcgcgtcccactgcgctgtgggaccgggtacctggaaaacattttgcataaaagcccctctgatattttacccaggggtgttccgtggaaaagaggaaaaaatgagggggcgggatgagaaatggagcgtagtacatctcggcggagtcgaagaagttgacgccggcgtcgaatgcggcgtcgaggaggcggagcgactccggcagcccgctctgctcccccatcgtcat
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| CDS seq | atgacgatgggggagcagagcgggctgccggagtcgctccgcctcctcgacgccgcattcgacgccggcgtcaacttcttcgactccgccgagatgtacccggtcccacagcgcagtgggacgcgcgggcgcagcgaggagttcctcggccgctggctacgggctcgctgggccccacgtgacagcgtcgtggtcgccactaaggtcgccgggccgtccgggcagatgacgtggatccgcggggggccggcgtctctcgattcgcggaatgtcggggaggcgattgatggaagtttgcgcaggctgggagtggattacattgatctttaccagatacattggcctgatcgctacgtcccaatgtttggagagacagagtatgatccaagtcatcagtatatgtctgttccaatggaagagcagctgatagctcttggaagagccatagatgctggcaagattaggtacattggccttagcaatgaaAcaccttatgggttgatgaaattccttcagctgagtagagattcccaactgcacaacaatatactgactgtgcaaaactcgtataaccttctatgtcgaaattttgatgctgggctagcagaatgctgccaccatgagagaatcagcttgctagcttacagcccaatggccatgggtatactttctgggaagtattactcgtcggatggtagcggcccaccagatgcaagaatgaatcttttcaaaggaagatactctgagggtgaatccagatataatcttcaaaaccccaaactgaaagctgctgtgaagttcgccatggcaagcagcaagctctcctcggcgttcgcgctcgtcctcctgctgctcgccggcggcggcgggctgctgccggcggcggaggcggcgtcagctcacctgcacttcttcatgcacgacacgctgacggggccgacgccgacggcggtgcaggtgctgaacgggccgcggggccacttcggcgacacgatcgtgatcgacgacgtgctgacggcggcggcgagccggtcgtcggcggccgtggggcgagccaaggggcagtacatctgggcgtcgtcggggaacccggagctgctggtgaccatggaggtggtgctgacgtcgggcccgttcgccggcagctcggtcaccgtcgtcgggagggacgacatcgccgcgccggtgagggagctgtcggtggtcggcggcacgggggagttcaggatggcgtccgggtacgtgctctggaagacggtcagcctcgaccaccccaacgccatccttgagctcgacgtctacgtcaacccgtga
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| Protein seq | MTMGEQSGLPESLRLLDAAFDAGVNFFDSAEMYPVPQRSGTRGRSEEFLGRWLRARWAPRDSVVVATKVAGPSGQMTWIRGGPASLDSRNVGEAIDGSLRRLGVDYIDLYQIHWPDRYVPMFGETEYDPSHQYMSVPMEEQLIALGRAIDAGKIRYIGLSNETPYGLMKFLQLSRDSQLHNNILTVQNSYNLLCRNFDAGLAECCHHERISLLAYSPMAMGILSGKYYSSDGSGPPDARMNLFKGRYSEGESRYNLQNPKLKAAVKFAMASSKLSSAFALVLLLLAGGGGLLPAAEAASAHLHFFMHDTLTGPTPTAVQVLNGPRGHFGDTIVIDDVLTAAASRSSAAVGRAKGQYIWASSGNPELLVTMEVVLTSGPFAGSSVTVVGRDDIAAPVRELSVVGGTGEFRMASGYVLWKTVSLDHPNAILELDVYVNP |
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| Function | Protein tas [UniProtKB/Swiss-Prot:P0A9T5] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_11g0021300 | OsLima_11g0021300.01 | Chr11 | 27092162 | 27095496 | - | NAM | ||
| CDS seq | atgacgatgggggagcagagcgggctgccggagtcgctccgcctcctcgacgccgcattcgacgccggcgtcaacttcttcgactccgccgagatgtacccggtcccacagcgcagtgggacgcgcgggcgcagcgaggagttcctcggccgctggctacgggctcgctgggccccacgtgacagcgtcgtggtcgccactaaggtcgccgggccgtccgggcagatgacgtggatccgcggggggccggcgtctctcgattcgcggaatgtcggggaggcgattgatggaagtttgcgcaggctgggagtggattacattgatctttaccagatacattggcctgatcgctacgtcccaatgtttggagagacagagtatgatccaagtcatcagtatatgtctgttccaatggaagagcagctgatagctcttggaagagccatagatgctggcaagattaggtacattggccttagcaatgaaAcaccttatgggttgatgaaattccttcagctgagtagagattcccaactgcacaacaatatactgactgtgcaaaactcgtataaccttctatgtcgaaattttgatgctgggctagcagaatgctgccaccatgagagaatcagcttgctagcttacagcccaatggccatgggtatactttctgggaagtattactcgtcggatggtagcggcccaccagatgcaagaatgaatcttttcaaaggaagatactctgagggtgaatccagatataatcttcaaaaccccaaactgaaagctgctgtgaagttcgccatggcaagcagcaagctctcctcggcgttcgcgctcgtcctcctgctgctcgccggcggcggcgggctgctgccggcggcggaggcggcgtcagctcacctgcacttcttcatgcacgacacgctgacggggccgacgccgacggcggtgcaggtgctgaacgggccgcggggccacttcggcgacacgatcgtgatcgacgacgtgctgacggcggcggcgagccggtcgtcggcggccgtggggcgagccaaggggcagtacatctgggcgtcgtcggggaacccggagctgctggtgaccatggaggtggtgctgacgtcgggcccgttcgccggcagctcggtcaccgtcgtcgggagggacgacatcgccgcgccggtgagggagctgtcggtggtcggcggcacgggggagttcaggatggcgtccgggtacgtgctctggaagacggtcagcctcgaccaccccaacgccatccttgagctcgacgtctacgtcaacccgtga
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| Protein seq | MTMGEQSGLPESLRLLDAAFDAGVNFFDSAEMYPVPQRSGTRGRSEEFLGRWLRARWAPRDSVVVATKVAGPSGQMTWIRGGPASLDSRNVGEAIDGSLRRLGVDYIDLYQIHWPDRYVPMFGETEYDPSHQYMSVPMEEQLIALGRAIDAGKIRYIGLSNETPYGLMKFLQLSRDSQLHNNILTVQNSYNLLCRNFDAGLAECCHHERISLLAYSPMAMGILSGKYYSSDGSGPPDARMNLFKGRYSEGESRYNLQNPKLKAAVKFAMASSKLSSAFALVLLLLAGGGGLLPAAEAASAHLHFFMHDTLTGPTPTAVQVLNGPRGHFGDTIVIDDVLTAAASRSSAAVGRAKGQYIWASSGNPELLVTMEVVLTSGPFAGSSVTVVGRDDIAAPVRELSVVGGTGEFRMASGYVLWKTVSLDHPNAILELDVYVNP
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0645400 | SBH | 0.155308 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g42550 | SBH | 0.159956 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0645400 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0021930 | SBH | 0.085846 | 57.595741 | 23.025616 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0021900 | SBH | 0.0 | 1.251929 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0021740 | SBH | 0.0 | 23.010496 | 9.878263 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0021240 | SBH | 0.0 | 0.976822 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0021740 | SBH | 1.372901 | 2.107555 | 4.004775 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0375400 | RBH | 75.916523 | 0.7571335 | 6.4178615 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0022310 | SBH | 0.000000 | 0.037594 | 0.199900 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0405300 | SBH | 273.0937345 | 0.0344955 | 0.7231875 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0022100 | SBH | 0.000000 | 0.003922 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0021450 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0021850 | SBH | 0.0 | 7.241103 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0021430 | SBH | 0.373114 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0021600 | SBH | 0.135036 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G021650 | SBH | 0.263287 | 0.000000 | 0.241554 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0021330 | RBH | 0.0 | 0.000000 | 0.379267 |
