Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsMH63_09G0239900 | OGI:09041760 | 16/16 | Minghui 63 | MH63RS3 | HZAU | Chr09:15598917-15600489 | ||||||||
| Gene Symbol | OsMyb10 | ||||||||||
| DNA seq | ACCATCTTGCTAAATTAAAGCCTAAAGCCTTTCCATAGTATTAACCCAAATCGAGCAAATTTTTTCTCATCTTGGTAGCTTTGATTCTTCGTCTTCTTTGCGGCGATCGATTGATCTTGAGGAGCTTAATATATCGATTGAGATAGCAAATGGGGAGGCAGCCGTGCTGCGACAAGGTTGGGCTGAAGAAGGGTCCATGGACGGCGGAGGAGGACCAGAAGCTCGTCAGCTTCCTCCTCGGCAACGGCCAATGCTGCTGGCGTGCCGTCCCCAAGCTCGCCGGTGAGTCACCCACCTCGCCAGAGTTTCAGTCTCTCTCTTTAATTTGGTCGATCCATTGATCAATGGACTGATGTATCTGTGTAACTGAAACAGGGTTGCTCCGGTGTGGGAAGAGCTGCCGGCTCCGGTGGACGAACTACCTCCGGCCGGACCTGAAGCGTGGTCTCCTGTCGGAGACGGAGGAGAAGACGGTGATCGACCTGCACGAGCAGCTCGGCAACAGGTTTGATCCTCGACGAGCTGAGCTCGCGACATGGTGGCGAGAGATGAGACTAGAGTGCTAAATAATATATGTGCAGGTGGTCCAAGATCGCGTCGCACCTGCCGGGCAGGACGGACAACGAGATCAAGAACCACTGGAACACGCACATCAAGAAGAAGCTCCGGAAGATGGGGATCGACCCCGTCACACACAAGCCCCTCTACCCTGCTCCGCCGCTGGCCGACGGCGGCTCGCCGGAGCAGAAGGTGCCGGAGGAGGAGGAGGAGGTGGAGGAGAAGTCGTCTGCTGCCGTGGAAAGCTCGACGAGCACCGGCGCCGGCCACGACGTGTTCTGCACCGACGAGGTGCCCATGCTGCACCTGGACGACATCGTCCTCCCGCCGCCGTGCGACGTCGTCGGCGACACCGCCGGCTCGCCGGCAGAGTCGTCGTCCACGTCGACGTCGTCGAGCGGCGGCGGCGGCATCGACGAGGAGTGGCTGCTGCCGATCATGGAGTGGCCGGAGTCGATGTACCTGATGGGGCTCGACGACGTCGACATGGTCACCACGGCGGCGCCGGCGATGGCGACGTCGTGGGAGTTCGAGGATCCGTTCAACGCGTACCAGAGGATCGCGTTGTTTGATCACCACCACGAGCTGACGTGGGCTTGACGTAACCACTTCTGAATTTTCTCTTGTTTCATACTCCCTCGGTCTCATAATATAAGAGATTTATTGTACCGGGATCCATTATATTATGAGATGGAGGGAGTACAAATTTCATCTCGGCGCTAGCTGCACTTAGTGATTTATTACCATTGGATTATTAGTGCCCTAATTAAACAATTAGAGATAGGATTAAGAACATATATAAGATGATAAAAAAAAAAGGTGAAGTGGTTGTGTGAGAGAGAGAGACAAATGCATGAGCTAGCCCTCTTTAATTTCGTCTTTCTGTCATTTTTTTTTCTGCTCATCATTTTTTTTTCAGGCTTCTTTTAGATACATGTGTTTGGCATACATACATGTAAATGAAAGGAATTTGAATAATGAAAATGAGAGTGAATGGTGTCATCGACTTTTACAA
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| CDS seq | ATGGGGAGGCAGCCGTGCTGCGACAAGGTTGGGCTGAAGAAGGGTCCATGGACGGCGGAGGAGGACCAGAAGCTCGTCAGCTTCCTCCTCGGCAACGGCCAATGCTGCTGGCGTGCCGTCCCCAAGCTCGCCGGGTTGCTCCGGTGTGGGAAGAGCTGCCGGCTCCGGTGGACGAACTACCTCCGGCCGGACCTGAAGCGTGGTCTCCTGTCGGAGACGGAGGAGAAGACGGTGATCGACCTGCACGAGCAGCTCGGCAACAGGTGGTCCAAGATCGCGTCGCACCTGCCGGGCAGGACGGACAACGAGATCAAGAACCACTGGAACACGCACATCAAGAAGAAGCTCCGGAAGATGGGGATCGACCCCGTCACACACAAGCCCCTCTACCCTGCTCCGCCGCTGGCCGACGGCGGCTCGCCGGAGCAGAAGGTGCCGGAGGAGGAGGAGGAGGTGGAGGAGAAGTCGTCTGCTGCCGTGGAAAGCTCGACGAGCACCGGCGCCGGCCACGACGTGTTCTGCACCGACGAGGTGCCCATGCTGCACCTGGACGACATCGTCCTCCCGCCGCCGTGCGACGTCGTCGGCGACACCGCCGGCTCGCCGGCAGAGTCGTCGTCCACGTCGACGTCGTCGAGCGGCGGCGGCGGCATCGACGAGGAGTGGCTGCTGCCGATCATGGAGTGGCCGGAGTCGATGTACCTGATGGGGCTCGACGACGTCGACATGGTCACCACGGCGGCGCCGGCGATGGCGACGTCGTGGGAGTTCGAGGATCCGTTCAACGCGTACCAGAGGATCGCGTTGTTTGATCACCACCACGAGCTGACGTGGGCTTGA
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| Protein seq | MGRQPCCDKVGLKKGPWTAEEDQKLVSFLLGNGQCCWRAVPKLAGLLRCGKSCRLRWTNYLRPDLKRGLLSETEEKTVIDLHEQLGNRWSKIASHLPGRTDNEIKNHWNTHIKKKLRKMGIDPVTHKPLYPAPPLADGGSPEQKVPEEEEEVEEKSSAAVESSTSTGAGHDVFCTDEVPMLHLDDIVLPPPCDVVGDTAGSPAESSSTSTSSSGGGGIDEEWLLPIMEWPESMYLMGLDDVDMVTTAAPAMATSWEFEDPFNAYQRIALFDHHHELTWA |
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| Function | Transcription factor MYB20 [UniProtKB/Swiss-Prot:Q9C7U7] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsMH63_09G0239900 | OsMH63_09T0239900-mRNA-1 | Chr09 | 15598917 | 15600489 | + | maker | ||
| CDS seq | ATGGGGAGGCAGCCGTGCTGCGACAAGGTTGGGCTGAAGAAGGGTCCATGGACGGCGGAGGAGGACCAGAAGCTCGTCAGCTTCCTCCTCGGCAACGGCCAATGCTGCTGGCGTGCCGTCCCCAAGCTCGCCGGGTTGCTCCGGTGTGGGAAGAGCTGCCGGCTCCGGTGGACGAACTACCTCCGGCCGGACCTGAAGCGTGGTCTCCTGTCGGAGACGGAGGAGAAGACGGTGATCGACCTGCACGAGCAGCTCGGCAACAGGTGGTCCAAGATCGCGTCGCACCTGCCGGGCAGGACGGACAACGAGATCAAGAACCACTGGAACACGCACATCAAGAAGAAGCTCCGGAAGATGGGGATCGACCCCGTCACACACAAGCCCCTCTACCCTGCTCCGCCGCTGGCCGACGGCGGCTCGCCGGAGCAGAAGGTGCCGGAGGAGGAGGAGGAGGTGGAGGAGAAGTCGTCTGCTGCCGTGGAAAGCTCGACGAGCACCGGCGCCGGCCACGACGTGTTCTGCACCGACGAGGTGCCCATGCTGCACCTGGACGACATCGTCCTCCCGCCGCCGTGCGACGTCGTCGGCGACACCGCCGGCTCGCCGGCAGAGTCGTCGTCCACGTCGACGTCGTCGAGCGGCGGCGGCGGCATCGACGAGGAGTGGCTGCTGCCGATCATGGAGTGGCCGGAGTCGATGTACCTGATGGGGCTCGACGACGTCGACATGGTCACCACGGCGGCGCCGGCGATGGCGACGTCGTGGGAGTTCGAGGATCCGTTCAACGCGTACCAGAGGATCGCGTTGTTTGATCACCACCACGAGCTGACGTGGGCTTGA
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| Protein seq | MGRQPCCDKVGLKKGPWTAEEDQKLVSFLLGNGQCCWRAVPKLAGLLRCGKSCRLRWTNYLRPDLKRGLLSETEEKTVIDLHEQLGNRWSKIASHLPGRTDNEIKNHWNTHIKKKLRKMGIDPVTHKPLYPAPPLADGGSPEQKVPEEEEEVEEKSSAAVESSTSTGAGHDVFCTDEVPMLHLDDIVLPPPCDVVGDTAGSPAESSSTSTSSSGGGGIDEEWLLPIMEWPESMYLMGLDDVDMVTTAAPAMATSWEFEDPFNAYQRIALFDHHHELTWA
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.888697 | 49.476286 | 0.176529 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_09g0401000 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os09g23620 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os09g0401000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_09g0009650 | RBH | 0.0 | 0.000000 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_09g0009600 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_09g0009860 | RBH | 0.0 | 0.0 | 2.820115 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_09g0009620 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_09g0009800 | RBH | 0.0 | 0.0 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0329000 | RBH | 1.4769045 | 0.148857 | 0.575356 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_09g0009760 | RBH | 0.0 | 0.119463 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_09G0225800 | RBH | 1.8088795 | 65.6115725 | 0.068206 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_09g0009760 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_09g0009520 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_09g0009670 | RBH | 0.0 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_09g0009480 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_09g0009510 | RBH | 0.0 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_09G010010 | RBH | 0.0 | 1.791396 | 1.817487 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_09g0009820 | RBH | 0.0 | 0.000000 | 0.0 |
