Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os09g0401000 | OGI:09041760 | 50/50 | Nipponbare | IRGSP 1.0 | RAP-db | Chr09:14029432-14030989 | ||||||||
| Gene Symbol | OsMyb10 | ||||||||||
| Mutant | - | ||||||||||
| Stuctural Variations | - |
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| DNA seq | ACCATCTTGCTAAATTAAAGCCTAAAGCCTTTCCATAGTATTAACCCAAATCGAGCAAATTTTTTCTCATCTTGGTAGCTTTGATTCTTCGTCTTCTTTGCGGCGATCGATTGATCTTGAGGAGCTTAATATATCGATTGAGATAGCAAATGGGGAGGCAGCCGTGCTGCGACAAGGTTGGGCTGAAGAAGGGTCCATGGACGGCGGAGGAGGACCAGAAGCTCGTCAGCTTCCTCCTCGGCAACGGCCAATGCTGCTGGCGTGCCGTCCCCAAGCTCGCCGGTGAGTCACCCACCTCGCCAGAGTTTCAGTCTCTCTCTTTAATTTGGTCGATCCATTGATCAATGGACTGATGTATCTGTGTAACTGAAACAGGGTTGCTCCGGTGTGGGAAGAGCTGCCGGCTCCGGTGGACGAACTACCTCCGGCCGGACCTGAAGCGTGGTCTCCTGTCGGAGACGGAGGAGAAGACGGTGATCGACCTGCACGAGCAGCTCGGCAACAGGTTTGATCCTCGACGAGCTGAGCTCGCGACATGGTGGCGAGAGATGAGACTAGAGTGCTAAATAATATATGTGCAGGTGGTCCAAGATCGCGTCGCACCTGCCGGGCAGGACGGACAACGAGATCAAGAACCACTGGAACACGCACATCAAGAAGAAGCTCCGGAAGATGGGGATCGACCCCGTCACACACAAGCCCCTCTACCCTGCTCCGCCGCTGGCCGACGGCGGCTCGCCGGAGCAGAAGGTGCCGGAGGAGGAGGAGGAGGTGGAGGAGAAGTCGTCTGCTGCCGTGGAAAGCTCGACGAGCACCTGCGCCGGCCACGACGTGTTCTGCACCGACGAGGTGCCCATGCTGCACCTGGACGACATCGTCCTCCCGCCGCCGTGCGACGTCGTCGGCGACACCGCCGGCTCGCCGGCAGAGTCGTCGTCCACGTCGACGTCGTCGAGCGGCGGCGGCGGCATCGACGAGGAGTGGCTGCTGCCGATCATGGAGTGGCCGGAGTCGATGTACCTGATGGGGCTCGACGACGTCGACATGGTCACCACGGCGGCGCCGGCGATGGCGACGTCGTGGGAGTTCGAGGATCCGTTCAACGCGTACCAGAGGATCGCGTTGTTTGATCACCACCACGAGCTGACGTGGGCTTGACGTAACCACTTCTGAATTTTCTCTTGTTTCATACTCCCTCGGTCTCATAATATAAGAGATTTATTGTACCGGGATCTATTATATTATGAGATGGAGGGAGTACAAATTTCATCTCGGCGCTAGCTGCACTTAGTGATTTATTACCATTGGATTATTAGTGCCCTAATTAAACAATTAGAGATAGGATTAAGAACATATATAAGATGATAAAAAAAAAGGTGAAGTGGTTGTGTGAGAGAGAGAGAGACAAATGCATGAGCTAGCCCTCTTTAATTTCGTCTTTCTGTCATTTTTTTTTCTGCTCATCATTTTTTTTCAGGCTTCTTTTAGATACATGTGTTTGGCATACATACATGTAAATGAAAGGAATTTGAATAATGAAAATGAGAGTGAATGGTGT
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| CDS seq | ATGGGGAGGCAGCCGTGCTGCGACAAGGTTGGGCTGAAGAAGGGTCCATGGACGGCGGAGGAGGACCAGAAGCTCGTCAGCTTCCTCCTCGGCAACGGCCAATGCTGCTGGCGTGCCGTCCCCAAGCTCGCCGGGTTGCTCCGGTGTGGGAAGAGCTGCCGGCTCCGGTGGACGAACTACCTCCGGCCGGACCTGAAGCGTGGTCTCCTGTCGGAGACGGAGGAGAAGACGGTGATCGACCTGCACGAGCAGCTCGGCAACAGGTGGTCCAAGATCGCGTCGCACCTGCCGGGCAGGACGGACAACGAGATCAAGAACCACTGGAACACGCACATCAAGAAGAAGCTCCGGAAGATGGGGATCGACCCCGTCACACACAAGCCCCTCTACCCTGCTCCGCCGCTGGCCGACGGCGGCTCGCCGGAGCAGAAGGTGCCGGAGGAGGAGGAGGAGGTGGAGGAGAAGTCGTCTGCTGCCGTGGAAAGCTCGACGAGCACCTGCGCCGGCCACGACGTGTTCTGCACCGACGAGGTGCCCATGCTGCACCTGGACGACATCGTCCTCCCGCCGCCGTGCGACGTCGTCGGCGACACCGCCGGCTCGCCGGCAGAGTCGTCGTCCACGTCGACGTCGTCGAGCGGCGGCGGCGGCATCGACGAGGAGTGGCTGCTGCCGATCATGGAGTGGCCGGAGTCGATGTACCTGATGGGGCTCGACGACGTCGACATGGTCACCACGGCGGCGCCGGCGATGGCGACGTCGTGGGAGTTCGAGGATCCGTTCAACGCGTACCAGAGGATCGCGTTGTTTGATCACCACCACGAGCTGACGTGGGCTTGA
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| Protein seq | MGRQPCCDKVGLKKGPWTAEEDQKLVSFLLGNGQCCWRAVPKLAGLLRCGKSCRLRWTNYLRPDLKRGLLSETEEKTVIDLHEQLGNRWSKIASHLPGRTDNEIKNHWNTHIKKKLRKMGIDPVTHKPLYPAPPLADGGSPEQKVPEEEEEVEEKSSAAVESSTSTCAGHDVFCTDEVPMLHLDDIVLPPPCDVVGDTAGSPAESSSTSTSSSGGGGIDEEWLLPIMEWPESMYLMGLDDVDMVTTAAPAMATSWEFEDPFNAYQRIALFDHHHELTWA |
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| Function | Transcription factor MYB20 [UniProtKB/Swiss-Prot:Q9C7U7] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os09g0401000 | Os09t0401000-01 | Chr09 | 14029432 | 14030989 | + | irgsp1_rep | ||
| CDS seq | ATGGGGAGGCAGCCGTGCTGCGACAAGGTTGGGCTGAAGAAGGGTCCATGGACGGCGGAGGAGGACCAGAAGCTCGTCAGCTTCCTCCTCGGCAACGGCCAATGCTGCTGGCGTGCCGTCCCCAAGCTCGCCGGGTTGCTCCGGTGTGGGAAGAGCTGCCGGCTCCGGTGGACGAACTACCTCCGGCCGGACCTGAAGCGTGGTCTCCTGTCGGAGACGGAGGAGAAGACGGTGATCGACCTGCACGAGCAGCTCGGCAACAGGTGGTCCAAGATCGCGTCGCACCTGCCGGGCAGGACGGACAACGAGATCAAGAACCACTGGAACACGCACATCAAGAAGAAGCTCCGGAAGATGGGGATCGACCCCGTCACACACAAGCCCCTCTACCCTGCTCCGCCGCTGGCCGACGGCGGCTCGCCGGAGCAGAAGGTGCCGGAGGAGGAGGAGGAGGTGGAGGAGAAGTCGTCTGCTGCCGTGGAAAGCTCGACGAGCACCTGCGCCGGCCACGACGTGTTCTGCACCGACGAGGTGCCCATGCTGCACCTGGACGACATCGTCCTCCCGCCGCCGTGCGACGTCGTCGGCGACACCGCCGGCTCGCCGGCAGAGTCGTCGTCCACGTCGACGTCGTCGAGCGGCGGCGGCGGCATCGACGAGGAGTGGCTGCTGCCGATCATGGAGTGGCCGGAGTCGATGTACCTGATGGGGCTCGACGACGTCGACATGGTCACCACGGCGGCGCCGGCGATGGCGACGTCGTGGGAGTTCGAGGATCCGTTCAACGCGTACCAGAGGATCGCGTTGTTTGATCACCACCACGAGCTGACGTGGGCTTGA
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| Protein seq | MGRQPCCDKVGLKKGPWTAEEDQKLVSFLLGNGQCCWRAVPKLAGLLRCGKSCRLRWTNYLRPDLKRGLLSETEEKTVIDLHEQLGNRWSKIASHLPGRTDNEIKNHWNTHIKKKLRKMGIDPVTHKPLYPAPPLADGGSPEQKVPEEEEEVEEKSSAAVESSTSTCAGHDVFCTDEVPMLHLDDIVLPPPCDVVGDTAGSPAESSSTSTSSSGGGGIDEEWLLPIMEWPESMYLMGLDDVDMVTTAAPAMATSWEFEDPFNAYQRIALFDHHHELTWA
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_09g0401000 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os09g23620 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_09g0009650 | RBH | 0.0 | 0.000000 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_09g0009600 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_09g0009860 | RBH | 0.0 | 0.0 | 2.820115 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_09g0009620 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_09g0009800 | RBH | 0.0 | 0.0 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_09G0239900 | RBH | 0.888697 | 49.476286 | 0.176529 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_09g0009760 | RBH | 0.0 | 0.119463 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_09G0225800 | RBH | 1.8088795 | 65.6115725 | 0.068206 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_09g0009760 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_09g0009520 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_09g0009670 | RBH | 0.0 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_09g0009480 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_09g0009510 | RBH | 0.0 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_09G010010 | RBH | 0.0 | 1.791396 | 1.817487 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_09g0009820 | RBH | 0.0 | 0.000000 | 0.0 |
| Os XI: R9311 | R9311 | AGIS | R9311C09g31717 | RBH | None | None | None |
| Os XI-adm: HZ | HZ | PKU | OsHZ_09g0129300 | RBH | None | None | None |
| Os XI-adm: J4155S | J4155S | PKU | OsJ4155_09g0128300 | RBH | None | None | None |
| Os XI-adm: LK638S | LK638S | PKU | OsLK638S_09g0118300 | RBH | None | None | None |
| Os XI-adm: XL628S | XL628S | PKU | OsXL628S_09g0128900 | RBH | None | None | None |
| Os GJ-temp: 02428 | 02428 | SICAU | Os02428G0916670500.01 | RBH | None | None | None |
| Os cB: Basmati1 | Basmati1 | SICAU | OsBasmati1G0930829900.01 | RBH | None | None | None |
| Os O.glaberrima: Ogla | OglaRS2 | DIADE | Oglab_034087 | RBH | None | None | None |
| Os XI-1A: CN1 | CN1 | SICAU | OsCN1G0927754300.01 | RBH | None | None | None |
| Os XI-1A: D62 | D62 | SICAU | OsD62G0929504900.01 | RBH | None | None | None |
| Os XI-1A: DG | DG | SICAU | OsDGG0921191700.01 | RBH | None | None | None |
| Os GJ-temp: DHX2 | DHX2 | SICAU | OsDHX2G0925238900.01 | RBH | None | None | None |
| Os XI-adm: FH838 | FH838 | SICAU | OsFH838G0925523300.01 | RBH | None | None | None |
| Os XI-1A: FS32 | FS32 | SICAU | OsFS32G0919326900.01 | RBH | None | None | None |
| Os XI-1A: G46 | G46 | SICAU | OsG46G0917332900.01 | RBH | None | None | None |
| Os XI-adm: G630 | G630 | SICAU | OsG630G0914917500.01 | RBH | None | None | None |
| Os XI-1B: G8 | G8 | SICAU | OsG8G0921345700.01 | RBH | None | None | None |
| Os XI-1A: II32 | II32 | SICAU | OsII32G0929558500.01 | RBH | None | None | None |
| Os XI-1B: J4155 | J4155 | SICAU | OsJ4155G0919946700.01 | RBH | None | None | None |
| Os GJ-temp: Kosh | Kosh | SICAU | OsKoshG0925870700.01 | RBH | None | None | None |
| Os GJ-temp: KY131 | KY131 | SICAU | OsKY131G0917113300.01 | RBH | None | None | None |
| Os GJ-trp: Lemont | Lemont | SICAU | OsLemontG0916669100.01 | RBH | None | None | None |
| Os GJ-adm: LJ | LJ | SICAU | OsLJG0917604500.01 | RBH | None | None | None |
| Os GJ-sbtrp: NamRoo | NamRoo | SICAU | OsNamRooG0924798700.01 | RBH | None | None | None |
| Os XI-1B: R498 | R498 | SICAU | OsR498G0917407900.01 | RBH | None | None | None |
| Os XI-1B: R527 | R527 | SICAU | OsR527G0919394700.01 | RBH | None | None | None |
| Os XI-1B: S548 | S548 | SICAU | OsS548G0937660100.01 | RBH | None | None | None |
| Os XI-2: TM | TM | SICAU | TMG0925200500.01 | RBH | None | None | None |
| Os XI-3: Tumba | Tumba | SICAU | OsTumbaG0920627900.01 | RBH | None | None | None |
| Os XI-adm: WSSM | WSSM | SICAU | OsWSSMG0915599100.01 | RBH | None | None | None |
| Os XI-1B: Y3551 | Y3551 | SICAU | OsY3551G0921158900.01 | RBH | None | None | None |
| Os XI-1B: Y58S | Y58S | SICAU | OsY58SG0923215500.01 | RBH | None | None | None |
| Os XI-adm: YX1 | YX1 | SICAU | OsYX1G0926169900.01 | RBH | None | None | None |
| Os GJ-temp: ZH11 | ZH11 | SICAU | OsZH11G0923277900.01 | RBH | None | None | None |
