Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsMH63_08G0218000 | OGI:01023240 | 16/16 | Minghui 63 | MH63RS3 | HZAU | Chr08:14945496-14947677 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGGAGCTCCTGGACGCACGCAGCACCTGGCGCTGGGTCGCCGCCGACGACCGCCTCTGGGCACCCAAGGTCCCCCCCTCTCTCTCTCTCATTACAGCCTGCACGGCTCCTGTTCGACGAATTGCCTGCGAGGGGCACTCGATTCCCCCTCACGAGCGGTTAATCGAGCAGTGGCTACTCTCGTGTCTTCTGTTAGGATCGAGCATACCGTATTCGGGAGTGGTGTTGATTAGGAGCTTTTATAGAATTCTCATTTATTGATTGTCCAATCATGGATGCCAAAAGAGAAAGAGCGCACATTCGGCTAGTGTGTTCTAAACTGTCTAATTTTCATTGGTATTTTGCAGGCTTATTTGATGAGAGCTGGGGCTGTCATTCATAGCCATGGGATGGAAACTTGCATTGCAACCATGCTTAATACTGGTGCAAAAGAGTTTAGGGTGAACCTACTTGTCTCTTTTCCCCATGAATCTTAGCTAATGCTCCAGTTCTGCTTTATATTTCTCATGAAGTTAGCTGTAATGTTTACAGAAATGTGGTAGTACTAAGAAAATGCACTATTTCTCATGTAGTGTACCACATTATGGACATTTTTCTGTCTGATCTAATGTATCAAATTGAAAAACGGATAATTGTTCATATTTTTAGATTTCCGCTTACTTTTCCATTACAAGAACTTCAATGGTATTAACAATTAAGTGCTAATCTTCTATATGATGCACTATTCAATAAATTGGAGATTATGTTTGCTCCATTTCCTTTTCATTTCATGGCAGACATTATTATATATGTACTAGAAAGAGTGGTGAACATTTTTTTTTAAGATTTGATCTATTATTGATTTCACACAGACATGCATCAGCTATCAGGACCAGTTGGAATAATTGAAATGCTAATTGAGAACTTTGCATGCACCACATAGTACAGCAACTACTCAAGCCAAGTTCTATTTACTAGTGAAGCCATTTCCAACTTATATCAATCCATTTATTAGAAATATGCATGTACATTGTGTGTTTACTGAGTTTTTACTTGTAGAATGTACCATCCTAGTATAATTATTTTAAATAAAACTCCCTTAGTTGATCTCTGCAAATTAGGTGGCTAGCTGTCCTTGCAGTGAGTTGTCGTAGTACAAATTTGAAACAGTCTTCGGGCTTCAGATTTTCCATCTACATTAATTATGAAAATGTCACCTACATACATCTCAATTCTAATATAAGTTAACATTTGCAAGTGGGAGCCAATTAAACTGTACTTCAGCACTTATCTTCTTTTTATTTATTTACTAGCTATGATTTGCGACCTGTGGGTGAGCAATCAACTTCTTGCTGAAGTGTCAGAGAAGGGTACCTGAAGGAACAGAAGATCAACACTAACTTAAAGGCTCATACATCATGTAAAGCTAAAATCAGTTTGTTCCCATAGTTTGTGAGATAAATTGCAATCCTTGCTGCTTGTAAATTGTAATTGAATCTGTTACGATTGCAATTATACTGCTTCAACATAAATTTCTCATAAAATGGAACTGGTAATTTAATATTGGTGGATTGTGAGAATATCGAAGCTATGCTACAGATTGAATTAAATGGAACTACATCAGTTATGTTATTGACACTTATCCTGCACATTTGACACTGATCTTCAATTCTGTATTGAAATAGTAGGTGTTGCATAGATTACTTATCATTGAATGGAGTATTATTATAATCTATATATCTGACCCTTAATACTTTTGTCTTTCTGATAATCTGATTCAAGTTTTTAGATGCTCAACTTATCATGGCGGTCACAAGATATTTTGGAGTGGCATTTCTCTACAAGGGAAATGCCTTGCCTGTTGTAGATTTGCCATCGTTTTGTCTCATTTTGTAGATTGTATAGGAGAATTTCTCATTTTGTACAACTAACCTATGTACATGGCATTTGTAATTAAATGGAATTGGTATATTCAGTACTAGTGGAATGTGGATGCATGAGAACTGTTGGTGGTATATTCAGTTCTAGATCAGTAGGATTTGATTCCATGAACTATATTTTTTTTAACCCACTGCAGGGCACACTAACAGAATATCTGTCAGAAAAACTGATATATGCAAACTGCGTATCTGTCAGTAATCCGTTAACTGTCGGTAAAGGACCATCTGTCGGTAACTTCCTTCTGTCGGTAATTCATTTGTAG
More
|
||||||||||
| CDS seq | ATGGAGCTCCTGGACGCACGCAGCACCTGGCGCTGGGTCGCCGCCGACGACCGCCTCTGGGCACCCAAGGCTTATTTGATGAGAGCTGGGGCTGTCATTCATAGCCATGGGATGGAAACTTGCATTGCAACCATGCTTAATACTGGTGCAAAAGAGTTTAGGGGCACACTAACAGAATATCTGTCAGAAAAACTGATATATGCAAACTGCGTATCTGTCAGTAATCCGTTAACTGTCGGTAAAGGACCATCTGTCGGTAACTTCCTTCTGTCGGTAATTCATTTGTAG |
||||||||||
| Protein seq | MELLDARSTWRWVAADDRLWAPKAYLMRAGAVIHSHGMETCIATMLNTGAKEFRGTLTEYLSEKLIYANCVSVSNPLTVGKGPSVGNFLLSVIHL |
||||||||||
| Function | Probable bifunctional methylthioribulose-1-phosphate dehydratase/enolase-phosphatase E1 [UniProtKB/Swiss-Prot:C6JS30] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsMH63_08G0218000 | OsMH63_08T0218000.1 | Chr08 | 14945496 | 14947677 | + | maker | ||
| CDS seq | ATGGAGCTCCTGGACGCACGCAGCACCTGGCGCTGGGTCGCCGCCGACGACCGCCTCTGGGCACCCAAGGCTTATTTGATGAGAGCTGGGGCTGTCATTCATAGCCATGGGATGGAAACTTGCATTGCAACCATGCTTAATACTGGTGCAAAAGAGTTTAGGGGCACACTAACAGAATATCTGTCAGAAAAACTGATATATGCAAACTGCGTATCTGTCAGTAATCCGTTAACTGTCGGTAAAGGACCATCTGTCGGTAACTTCCTTCTGTCGGTAATTCATTTGTAG
More
|
|||||||
| Protein seq | MELLDARSTWRWVAADDRLWAPKAYLMRAGAVIHSHGMETCIATMLNTGAKEFRGTLTEYLSEKLIYANCVSVSNPLTVGKGPSVGNFLLSVIHL |
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.1712235 | 2.397179 | 3.168659 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g46230 | SBH | 0.000000 | 0.162501 | 0.000000 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0029070 | SBH | 0.700404 | 2.978722 | 2.463560 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0021440 | SBH | 0.117676 | 2.537631 | 0.810170 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0028840 | SBH | 1.608337 | 2.405051 | 3.864077 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_07g0009000 | SBH | 0.166261 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0011180 | RBH | 5.343542 | 10.388365 | 7.838413 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0452600 | SBH | 2.681549 | 8.7126255 | 10.021394 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0011250 | RBH | 0.561968 | 0.515441 | 0.973241 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0230300 | RBH | 3.15675 | 7.0106225 | 10.0872225 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0028680 | SBH | 0.597484 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0010950 | RBH | 0.072267 | 3.094784 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0010810 | RBH | 2.295839 | 5.925587 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0011600 | RBH | 0.000000 | 0.000000 | 0.519786 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0028470 | SBH | 0.000000 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G011050 | RBH | 0.433981 | 1.715141 | 1.615377 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0013110 | SBH | 0.0 | 0.0 | 0.0 |
