Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_08g0011600 | OGI:01023240 | 16/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr08:15763322-15765609 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atccttttcttccctacccagccgtcacgcactcacgcttcctccggcggcggcaaggcgacggcatcggcggccaaggcgcgggcggcggcggcgagcaaggtgcgggcgacggcggcggcggcgagcaaggtgcaggcgacgtcatcggcaaccaaggcgcgggcggcggcggcggcggcggaagcgggaggcggaggagtgggagaggcggaagagggggaggaggaggaggaggcggcagagacgagaggaccccgtggatgtgctcggggaggaggtgatggggcgggtgatggagctcctggacgcacgcagcacctggcgctgggtcgccgccgacgaccgcctctgggcacccaaggtccccccctctctctctctcattacagcctgcacggctcctgttcgacgaattgcctgcgaggggcactcgattccccctcacgagcggttaatcgagcagtggctactctcgtgtcttctgttaggatcgagcataccgtattcgggagtggtgttgattaggagcttttatagaattctcatttattgattgtccaatcatggatgccaaaagagaaagagcgcacattcggctagtgtgttctaaactgtctaattttcattggtattttgcaggcttatttgatgagagctggggctgtcattcatagccatgggatggaaacttgcattgcaaccatgcttaatactggtgcaaaagagtttagggtgaacctacttgtctcttttccccatgaatcttagctaatgctccagttctgctttatatttctcatgaagttagctgtaatgtttacagaaatgtggtagtactaagaaaatgcactatttctcatgtagtgtaccacattatggacatttttctgtctgatctaatgtatcaaattgaaaaacggataattgttcatatttttagatttccgcttacttttccattacaagaacttcaatggtattaacaattaagtgctaatcttctatatgatgcactattcaataaattggagattatgtttgctccatttccttttcatttcatggcagacattattatatatgtactagaaagagtggtgaacattttttttTaagatttgatctattattgatttcacacagacatgcatcagctatcaggaccagttggaataattgaaatgctaattgagaactttgcatgcaccacatagtacagcaactactcaagccaagttctatttactagtgaagccatttccaacttatatcaatccatttattagaaatatgcatgtacattgtgtgtttactgagtttttacttgtagaatgtaccatcctagtataattattttaaataaaactcccttagttgatctctgcaaattaggtggctagctgtccttgcagtgagttgtcgtagtacaaatttgaaacagtcttcgggcttcagattttccatctacattaattatgaaaatgtcacctacatacatctcaattctaatataagttaacatttgcaagtgggagccaattaaactgtacttcagcacttatcttctttttatttatttactagctatgatttgcgacctgtgggtgagcaatcaacttcttgctgaagtgtcagagaagggtacctgaaggaacagaagatcaacactaacttaaaggctcatacatcatgtaaagctaaaatcagtttgttcccatagtttgtgagataaattgcaatccttgctgcttgtaaattgtaattgaatctgttacgattgcaattatactgcttcaacataaatttctcataaaatggaactggtaatttaatattggtggattgtgagaatatcgaagctatgctacagattgaattaaatggaactacatcagttatgttattgacacttatcctgcacatttgacactgatcttcaattctgtattgaaatagtaggtgttgcatagattacttatcattgaatggagtattattataatctatatatctgacccttaatacttttgtctttctgataatctgattcaagtttttagatgctcaacttatcatggcggtcacaagatattttggagtggcatttctctacaagggaaatgccttgcctgttgtagatttgccatcgttttgtctcattttgtagattgtataggagaatttctcattttgtacaactaacctatgtacatggcatttgtaattaaatggaattggtatattcagtactagtggaatgtggatgcatgagaactgttggtggt
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| CDS seq | tccttttcttccctacccagccgtcacgcactcacgcttcctccggcggcggcaaggcgacggcatcggcggccaaggcgcgggcggcggcggcgagcaaggtgcgggcgacggcggcggcggcgagcaaggtgcaggcgacgtcatcggcaaccaaggcgcgggcggcggcggcggcggcggaagcgggaggcggaggagtgggagaggcggaagagggggaggaggaggaggaggcggcagagacgagaggaccccgtggatgtgctcggggaggaggtgatggggcgggtgatggagctcctggacgcacgcagcacctggcgctgggtcgccgccgacgaccgcctctgggcacccaaggcttatttgatgagagctggggctgtcattcatagccatgggatggaaacttgcattgcaaccatgcttaatactggtgcaaaagagtttagg
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| Protein seq | SFSSLPSRHALTLPPAAARRRHRRPRRGRRRRARCGRRRRRRARCRRRHRQPRRGRRRRRRKREAEEWERRKRGRRRRRRQRREDPVDVLGEEVMGRVMELLDARSTWRWVAADDRLWAPKAYLMRAGAVIHSHGMETCIATMLNTGAKEFR |
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| Function | Probable bifunctional methylthioribulose-1-phosphate dehydratase/enolase-phosphatase E1 [UniProtKB/Swiss-Prot:C6JS30] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_08g0011600 | OsLiXu_08g0011600.01 | Chr08 | 15763569 | 15765576 | + | NAM | ||
| CDS seq | atggggcgggtgatggagctcctggacgcacgcagcacctggcgctgggtcgccgccgacgaccgcctctgggcacccaaggcttatttgatgagagctggggctgtcattcatagccatgggatggaaacttgcattgcaaccatgcttaatactggtgcaaaagagtttagggtgaacctacttgtctcttttccccatgaatcttag
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| Protein seq | MGRVMELLDARSTWRWVAADDRLWAPKAYLMRAGAVIHSHGMETCIATMLNTGAKEFRVNLLVSFPHES |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_08g0011600 | OsLiXu_08g0011600.02 | Chr08 | 15763322 | 15765609 | + | IsoSeq | ||
| CDS seq | tccttttcttccctacccagccgtcacgcactcacgcttcctccggcggcggcaaggcgacggcatcggcggccaaggcgcgggcggcggcggcgagcaaggtgcgggcgacggcggcggcggcgagcaaggtgcaggcgacgtcatcggcaaccaaggcgcgggcggcggcggcggcggcggaagcgggaggcggaggagtgggagaggcggaagagggggaggaggaggaggaggcggcagagacgagaggaccccgtggatgtgctcggggaggaggtgatggggcgggtgatggagctcctggacgcacgcagcacctggcgctgggtcgccgccgacgaccgcctctgggcacccaaggcttatttgatgagagctggggctgtcattcatagccatgggatggaaacttgcattgcaaccatgcttaatactggtgcaaaagagtttagg
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| Protein seq | SFSSLPSRHALTLPPAAARRRHRRPRRGRRRRARCGRRRRRRARCRRRHRQPRRGRRRRRRKREAEEWERRKRGRRRRRRQRREDPVDVLGEEVMGRVMELLDARSTWRWVAADDRLWAPKAYLMRAGAVIHSHGMETCIATMLNTGAKEFR |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 0.000000 | 0.519786 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g025639A | RBH | 3.144111 | 3.624014 | 1.745600 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g15110 | SBH | 0.853630 | 1.365460 | 0.791956 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0009270 | SBH | 0.000000 | 0.000000 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0028760 | SBH | 0.147725 | 0.000000 | 0.239832 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0028840 | SBH | 1.608337 | 2.405051 | 3.864077 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_07g0009000 | SBH | 0.166261 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0011180 | RBH | 5.343542 | 10.388365 | 7.838413 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0218000 | RBH | 1.1712235 | 2.397179 | 3.168659 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0011250 | RBH | 0.561968 | 0.515441 | 0.973241 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0230300 | RBH | 3.15675 | 7.0106225 | 10.0872225 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0028680 | SBH | 0.597484 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0010950 | RBH | 0.072267 | 3.094784 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0010810 | RBH | 2.295839 | 5.925587 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_10g0005180 | RBH | 0.898434 | 0.0 | 0.301978 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0028470 | SBH | 0.000000 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G011050 | RBH | 0.433981 | 1.715141 | 1.615377 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0013110 | SBH | 0.0 | 0.0 | 0.0 |
