Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_06g0021440 | OGI:01023240 | 16/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr06:24450371-24452379 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | gagaggaccccgtggatgtgctcggggaggaggtgatggggcgggtgatggagctcctggacgcacgcagcacctggcgctgggtcgccgccgacgaccgcctctgggcacccaaggtccccccccccctctctctctcattacagcctgcacggctcctgttcgacgaattgcctgcgaggggcactcgattccccctcacgagtggttaatcgagcagtggctactctcgtgtcttctgttaggatcgagcataccgtattcgggagtggtgttgattaggagcttttatagaattctcatttattgattgtccaatcatggttgccaaaagagaaagagcgaacattcggctagtgtgttctaaactgtctaattttcattggtattttgcaggcttatttgatgagagctggggctgtcattcatagccatgggatggaaacttgcattgcaaccatgcttaatactggtgcaaaagagtttagggtgaacctacttgtctcttttccccatgaatcttagctaatgctccagttctgctttatatttctcatgaagttagctgtaatgtttacagaaatgtggtagtactaagaaaatgcactatttctcatgtagtgtaccacattatggacatttttctgtctgatctaatgtatcaaattgaaaaacggataattgttcatatttttagatttccgcttacttttccattacaagaacttcaatggtattaacaattaagtgctaatcttctatatgatgcactattcaataaaattggagattatgtttgctccatttccttttcatttcatggcagacattattatatatgtactagaaagagtggtgaacatttttttttaagatttgatctattattgatttcacacagacatgcatcagctatcaggaccagttggaataattgaaatgctaattgagaactttgcatgcaccacatagtacagcaactactcaagccaagttctatttactagtgaagccatttccaacttatatcaatccatttattaggaatatgcatgtacattgtgtgtttactgagtttttacttgtagaatgtaccatcctagtataattattttaaataaaactcccttagttgatctctgcaaattaggtggctagctgtccttgcagtgagttgtcgtagtacaaatttgaaacagtcttcgggcttcagattttccatctacattaattatgaaaatgtcacctacatacatctcaattctaatataagttaacatttgcaagtgggagccaattaaactgtacttcagcacttatcttctttttatttatttactagctatgatttgcgacctgtgggtgagcaatcaacttcttgctgaagtgtcagagaagggtacctgaaggaacagaagatcaacactaacttaaaggctcatacatcatgtaagctaaaatcagtttgttcccatagtttgtgagataaattgcaatccttgctgcttgtaaattgtaattgaatctgttacgattgcaattatactgcttcaacataaatttctcataaaatggaactggtaatttaatattggtggattgtgagaatatcgaagctatgctacagattgaattaaatggaactacatcagttatgttattgacacttatcctgcacatttgacactgatcttcaattctgtattgaaatagtaggtgttgcatagattacttatcattaaatggagtattattataatctatatatctgacccttaatacttttgtctttctgataatctgattcaagtttttagatgctcaacttatcatggcggtcacaagatattttggagtggcatttctctacaagggaaatgccttgcctgttgtagatttgccatcgttttgtctcattttgtagattgtataggagaatttctctttttgtacaactaacctatgtacatggcatttgtaattaaatggaattggtatattcagtacta
More
|
||||||||||
| CDS seq | atggggcgggtgatggagctcctggacgcacgcagcacctggcgctgggtcgccgccgacgaccgcctctgggcacccaaggcttatttgatgagagctggggctgtcattcatagccatgggatggaaacttgcattgcaaccatgcttaatactggtgcaaaagagtttagggtgaacctacttgtctcttttccccatgaatcttag |
||||||||||
| Protein seq | MGRVMELLDARSTWRWVAADDRLWAPKAYLMRAGAVIHSHGMETCIATMLNTGAKEFRVNLLVSFPHES |
||||||||||
| Function | Probable bifunctional methylthioribulose-1-phosphate dehydratase/enolase-phosphatase E1 [UniProtKB/Swiss-Prot:C6JS30] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_06g0021440 | OsKeNa_06g0021440.01 | Chr06 | 24450371 | 24452379 | + | NAM | ||
| CDS seq | atggggcgggtgatggagctcctggacgcacgcagcacctggcgctgggtcgccgccgacgaccgcctctgggcacccaaggcttatttgatgagagctggggctgtcattcatagccatgggatggaaacttgcattgcaaccatgcttaatactggtgcaaaagagtttagggtgaacctacttgtctcttttccccatgaatcttag
More
|
|||||||
| Protein seq | MGRVMELLDARSTWRWVAADDRLWAPKAYLMRAGAVIHSHGMETCIATMLNTGAKEFRVNLLVSFPHES |
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.117676 | 2.537631 | 0.810170 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g025639A | SBH | 3.144111 | 3.624014 | 1.745600 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g40010 | RBH | 0.287135 | 0.357840 | 0.000000 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0029070 | SBH | 0.700404 | 2.978722 | 2.463560 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0028660 | SBH | 0.000000 | 0.000000 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0028840 | SBH | 1.608337 | 2.405051 | 3.864077 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_07g0009000 | SBH | 0.166261 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0011180 | SBH | 5.343542 | 10.388365 | 7.838413 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0452600 | SBH | 2.681549 | 8.7126255 | 10.021394 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0028310 | SBH | 0.714241 | 0.297424 | 1.174972 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0453800 | SBH | 0.39923 | 0.7801145 | 1.153886 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0014740 | RBH | 0.000000 | 0.122147 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0013080 | RBH | 0.207703 | 3.212054 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0014380 | RBH | 0.0 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0013380 | RBH | 0.000000 | 0.000000 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0014480 | RBH | 0.291066 | 2.111675 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G012790 | RBH | 0.000000 | 0.000000 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0013110 | RBH | 0.0 | 0.0 | 0.0 |
