Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsMH63_04G0351100 | OGI:04064650 | 16/16 | Minghui 63 | MH63RS3 | HZAU | Chr04:24146346-24149064 | ||||||||
| Gene Symbol | RH3.2A | ||||||||||
| DNA seq | GAGAGCGCGCGAGGTAAGAAGATTTTCTTCTGCTTCGATTTTTGGTTGGTCTAATCTAGTTTTGCGGCTGCTTGATTGGTGATTTGCTTCCTGTTAATCTCGCTGCGTGGCGGTGGCGGCTGCTTCGGTGGGGGGTGGTTAGATGGGCGGGGGGATTTGAATGGTACGCTCGCGGCTAGGGTTTGTGCACTATTCGTCGATTTGATCGCTTCGGGGGATTTATCCTGTTAGTTTTACCTTACGATTAGTTTCGCTTGGTTGTGGATAGTCGTGTGTACTTCGTGCATGGTTTGTTGCTACGAGATTACATGGTTGGAAACGCGTGATTCTATAGCCTACGAGATTTGCCCATGGCTAATTAGGATTTTCCTGCAAATCTCTACCTGTGCAATTAGTTGTATCAAATTTCTCTTCGAAATAATTGATTGGTATCGGTGTTTGAGGTTTTGGTATGTGGTGTTGGGTTGGGTGTGGAAGCGATTACTTCCTACTCTATAGGTTGATATACTTGTCTTCATAATGTCAGCTTTGAAATAGGAATTGATTTGGATTGTGTGTATATGTGGTGAGAATGGAATTCTGTATTAGATTGATCGTCAAACTTGAATTTGCATATTGATGCTTTGTAATGGCAAGGTCAATTTTCTCATATAAATAGTAATTAATTCTGGATTTGGATTGTGTGTATACGTGGTGAGAATAGAAATCTGTATTAGATTAATCGTCAAACTTGAATATGCATATTGATGCTTTGAAATGGCAAGGTCAATTTTCTCATGTAAATAGTAATTAACCGCTCTAGATTTTTTAACTATATTGTCATGTTACTTCAATCATCTGTGAATAGAACATCCCATTAATTAGTGGCTTTATTGCATTCAAAATTGGTCAGGACCTGTCACTCCTTTCCATCTTGCATGCTCAACATCTTAGTATGTTATATGCCACCTGTCACTCCTTTCCATCTTGCATGCTCAACATCTTAGTATGGTTATATGCTGTCTGTAGGTGTTACATGTTATATGACTGCAAATCTTTTAGCTACTGCTCATGTTTTGGGGGAACTGAAGATTAGGTTCGTAATTTTAGAAACTGGTGTGGGAGTAATAAGAAAATAGATCTAGGGATGTTGAACTGGCTACATTTCCTGCTGTTTTTTTTTTTTTTGAAATTTAGGTGCCGGTAATGCTTTTCTTCACTGCTAGAGATGGCAATGGGGAATCACTGCAGTTGGTATATTTTAGTATTTGGAAAAGCTATCGTAGTCCTATGATTGTTACTGGTAAAATTTACCCTGCTGTGTTTATTTGTGAGCAATGATTTCCCTGTATAGCTCTTTTATGAAGAATCATAGTTATAACGACCTTTGATTCCTTTTGCAAAATTGTCTCATGATTTAAGTTTGTGAATGCAATAGAAATTATAAACTGGTTAGTCATAGTCGTTCAGACTTTTTGCTTAATTGCAAACTTGATAATATGCTAGTTTGTTGGCAACAAGCAAACACTTTTTGTGTACCGTCATCTGAAAGTTGCGGCTGTGTGATGTCTTGAGTCCTTGACTATGTGCATTGTTGATCATGTCCCTTGTTTTTGTCCTCAGGTAAACCAAAGTTCTTTTTCCGATGGCTCGTACTAAGCAAACTGCTCGCAAGTCAACTGGAGGAAAGGCTCCCAGGAAGCAACTTGCCACCAAGGTATGTTTTTCGACATGATACCCTGCACATATCAATTGCCAAGGTGTTAATACTGTTGAACTGTGCTAAACTTACTGCTAGCGTTTTGATTATGTCAGTATGTTTGCTTGACAATGCATTACTTGTTTGTGGTCTTGACAGGCTGCTCGTAAGTCTGCTCCCACAACTGGAGGAGTGAAGAAGCCTCACCGTTACCGCCCTGGAACTGTTGCTCTTCGGTGTGTAAAAGCATATAGTACTTGTTATCTGAGTTACTTGTAATTAGTTTGCTGATGGCAAGTTATTAAAACACCATGCCTGACTGCAGTGAAATCCGCAAGTACCAGAAGAGCACTGAGCTGCTCATAAGGAAGCTTCCATTCCAGAGGCTTGTTAGGGAGATTGCCCAGGATTTTAAGGTGAGATTTATACATTCTGTTGTGCTAATGTGCTTGTGTTGTCGCACACGTGCAGTAAGCTAATAGCATTTTCTCACACTGTTCTATTTGTGCAGACTGATCTTCGTTTCCAGAGCCATGCGGTGCTTGCCCTTCAGGAAGCTGCCGAGGCGTACCTGGTGGGTCTCTTCGAGGACACCAACCTGTGCGCCATCCATGCCAAGCGTGTGACCATCATGCCCAAGGACATTCAGCTGGCTAGGAGGATCCGTGGTGAGAGGGCTTAGGCTTTCTCATCTCTGGGAGGGGCTCTGGTGTTTCATCTGTGACTACTTCCTGCTTTTGCTGCTGAACTCTTATTTGGTGTCGTGAATGGTGCTAATACTACTCACATGTAGTAGTAGATTGTTAGTGAAGTACTCTGTTTCTGTGTTCTAGAACTGGATATTTTGCTAGTAAGTTGTCTCGACTGTTGATTTCATCCATCCATCTGATGGATGTGTATCTAGTAGTTTCTCATCTGAAGTCCTGAAATCTGAACCTTGAATTTACCTGTGGAATGGAACTTAGAAAAACTGTGTTAAATGTTCAAAGATCTTGGCATGAATGGTTTGTTTCGATTTTATCCGAATGCAATACTAGGTGG
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| CDS seq | ATGGCTCGTACTAAGCAAACTGCTCGCAAGTCAACTGGAGGAAAGGCTCCCAGGAAGCAACTTGCCACCAAGGCTGCTCGTAAGTCTGCTCCCACAACTGGAGGAGTGAAGAAGCCTCACCGTTACCGCCCTGGAACTGTTGCTCTTCGTGAAATCCGCAAGTACCAGAAGAGCACTGAGCTGCTCATAAGGAAGCTTCCATTCCAGAGGCTTGTTAGGGAGATTGCCCAGGATTTTAAGACTGATCTTCGTTTCCAGAGCCATGCGGTGCTTGCCCTTCAGGAAGCTGCCGAGGCGTACCTGGTGGGTCTCTTCGAGGACACCAACCTGTGCGCCATCCATGCCAAGCGTGTGACCATCATGCCCAAGGACATTCAGCTGGCTAGGAGGATCCGTGGTGAGAGGGCTTAG
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| Protein seq | MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA |
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| Function | Histone H3.3 [UniProtKB/Swiss-Prot:Q71H73] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsMH63_04G0351100 | OsMH63_04T0351100.1 | Chr04 | 24146346 | 24149064 | + | maker | ||
| CDS seq | ATGGCTCGTACTAAGCAAACTGCTCGCAAGTCAACTGGAGGAAAGGCTCCCAGGAAGCAACTTGCCACCAAGGCTGCTCGTAAGTCTGCTCCCACAACTGGAGGAGTGAAGAAGCCTCACCGTTACCGCCCTGGAACTGTTGCTCTTCGTGAAATCCGCAAGTACCAGAAGAGCACTGAGCTGCTCATAAGGAAGCTTCCATTCCAGAGGCTTGTTAGGGAGATTGCCCAGGATTTTAAGACTGATCTTCGTTTCCAGAGCCATGCGGTGCTTGCCCTTCAGGAAGCTGCCGAGGCGTACCTGGTGGGTCTCTTCGAGGACACCAACCTGTGCGCCATCCATGCCAAGCGTGTGACCATCATGCCCAAGGACATTCAGCTGGCTAGGAGGATCCGTGGTGAGAGGGCTTAG
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| Protein seq | MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 43.6614015 | 195.826103 | 163.6042025 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0419600 | SBH | 0.0 | 0.0 | 1.424254 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g34240 | SBH | 0.0 | 0.0 | 0.328913 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0419600 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0013070 | SBH | 0.0 | 19.445164 | 0.776721 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0013910 | SBH | 0.0 | 3.496943 | 0.519583 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0013610 | SBH | 0.0 | 8.576385 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0013250 | SBH | 0.0 | 0.678623 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0013580 | SBH | 0.0 | 18.102732 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0026000 | RBH | 233.633705 | 361.897125 | 497.1544345 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0012490 | SBH | 0.0 | 2.433057 | 0.156006 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0347800 | RBH | 56.1737385 | 106.085949 | 162.58477 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0013090 | SBH | 0.0 | 0.634512 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0012680 | SBH | 0.0 | 21.828081 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0012690 | SBH | 0.0 | 41.147335 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0013260 | SBH | 0.0 | 1.153272 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0013480 | SBH | 0.0 | 12.581990 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G012630 | SBH | 0.0 | 2.103662 | 2.122355 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0014810 | RBH | 18.767223 | 141.899261 | 63.783527 |
