Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os04g0419600 | OGI:04064650 | 16/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr04:20738833-20740297 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATATTTCATGCAAAAGAACATTCTACATAAATTTTTTTTGGAGTGCTTTTCAACAATAACGTTTCAATATTTCTTTCGTTTATACCATTAAATAGCAATACAAAAATTAAATTATCCATCAACTTACAACTATCTCAAACCGGGCATATGAACCCTATGACTAATGTGATTTGGTCCCAAAGTTTGCCCTCCTAGTCGTTTGGTGGCTTCAATTGAATTGACATGTAACCTTATCCTATCAAAACTTACGGATTTGACCCTACCAACAATCTTACAGGCATCTTCATCGTTTGTTCTTCAGCTTATCAACTCCGACTAAAAACTATTCTAAGTTGATATTGTTGTTTTTCTTCGTAGCTTATTTTCCAGCGTTGCCATTTAAGTATTAAAAACCATATACAAAAATCTTTATGCACAGATTAATCTTAAATGGTTTATAAGAATTACAGCTTATCATCAGTTGCAAACCGGTGGTACTGCTTGAGAAAACCAAAGTCTCTTAATCCTGTGCAGAATGAGTGTGTCCACAAGCAATGTGGCCCACCAGGCCGCTGTTAGGCCAGAATGGGCCTACGCCTGGGCCGCATCTTCAATCGGGCTAAAAAAAAGTCATCATCTCCGCTCCCACCCAAGATCCTCTGACGTCTGGGTCCACCGATCCTCCCCCATCCCGTCCCAGCCAATAGCGTCGCGCCCTTCCCCCCACCCGCGGATCGCGGCCATCGTTAGACTCATCCCAGCCGTCCACCTAATCCGACGCTCCAAACCCCACCCCCCAAAAATCCCAAAATTTTTCGCGATCCCGCGCCTTCCGCCAACTACAAATACCCCCGCGCCCCCAACCCGAAATCCCCACGCCTCAATTCAAAAAATCCATTCGAATTTCGCAGCAAAGAGATCGAGAGAGAGATCCATCAATCCATCATCCATGGCGCGCACGAAGCAGACGGCGAGGAAGTCGACCGGCGGGAAGGCGCCTCGGAAGCAGCTGGCGACGAAGGCGGCGCGGAAGTCGGCGCCGGCGACCGGCGGCGTGAAGAAGCCGCACCGCTTCCGGCCGGGCACGGTGGCACTCCGGGAGATCCGCAAGTACCAGAAGAGCACGGAGCTGCTGATCCGGAAGCTCCCGTTCCAGCGGCTGGTGCGGGAGATCGCGCAGGACTTCAAGACGGACCTCCGGTTCCAGTCGTCCGCCGTCGCCGCGCTGCAGGAGGCCGCCGAGGCCTACCTCGTCGGCCTCTTCGAGGACACCAACCTCTGCGCCATCCACGCCAAGCGCGTCACCATCATGCCCAAGGACATCCAGCTCGCCCGCCGCATCAGGGGCGAGAGGGCTTGATGCCGTTATTGTTCGAGTTCATGGCTTGTTAGATCTAGAAGTGTTAATTAACCCATGGATCTGTGTTATCCTGTAATCACTCGCTTGAATTGGGTTCGCATTGATGGAATACAATCTGTTCTTGGC
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| CDS seq | ATGAGTGTGTCCACAAGCAATGTGGCCCACCAGGCCGCTGTTAGGCCAGAATGGGCCTACGCCTGGGCCGCATCTTCAATCGGGCTAAAAAAAAGTCATCATCTCCGCTCCCACCCAAGATCCTCTGACGTCTGGGTCCACCGATCCTCCCCCATCCCGTCCCAGCCAATAGCGTCGCGCCCTTCCCCCCACCCGCGGATCGCGGCCATCGTTAGACTCATCCCAGCCGTCCACCTAATCCGACGCTCCAAACCCCACCCCCCAAAAATCCCAAAATTTTTCGCGATCCCGCGCCTTCCGCCAACTACAAATACCCCCGCGCCCCCAACCCGAAATCCCCACGCCTCAATTCAAAAAATCCATTCGAATTTCGCAGCAAAGAGATCGAGAGAGAGATCCATCAATCCATCATCCATGGCGCGCACGAAGCAGACGGCGAGGAAGTCGACCGGCGGGAAGGCGCCTCGGAAGCAGCTGGCGACGAAGGCGGCGCGGAAGTCGGCGCCGGCGACCGGCGGCGTGAAGAAGCCGCACCGCTTCCGGCCGGGCACGGTGGCACTCCGGGAGATCCGCAAGTACCAGAAGAGCACGGAGCTGCTGATCCGGAAGCTCCCGTTCCAGCGGCTGGTGCGGGAGATCGCGCAGGACTTCAAGACGGACCTCCGGTTCCAGTCGTCCGCCGTCGCCGCGCTGCAGGAGGCCGCCGAGGCCTACCTCGTCGGCCTCTTCGAGGACACCAACCTCTGCGCCATCCACGCCAAGCGCGTCACCATCATGCCCAAGGACATCCAGCTCGCCCGCCGCATCAGGGGCGAGAGGGCTTGA
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| Protein seq | MSVSTSNVAHQAAVRPEWAYAWAASSIGLKKSHHLRSHPRSSDVWVHRSSPIPSQPIASRPSPHPRIAAIVRLIPAVHLIRRSKPHPPKIPKFFAIPRLPPTTNTPAPPTRNPHASIQKIHSNFAAKRSRERSINPSSMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA |
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| Function | Histone H3.2 [UniProtKB/Swiss-Prot:Q76MV0] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os04g0419600 | Os04t0419600-01 | Chr04 | 20738833 | 20740297 | + | irgsp1_rep | ||
| CDS seq | ATGAGTGTGTCCACAAGCAATGTGGCCCACCAGGCCGCTGTTAGGCCAGAATGGGCCTACGCCTGGGCCGCATCTTCAATCGGGCTAAAAAAAAGTCATCATCTCCGCTCCCACCCAAGATCCTCTGACGTCTGGGTCCACCGATCCTCCCCCATCCCGTCCCAGCCAATAGCGTCGCGCCCTTCCCCCCACCCGCGGATCGCGGCCATCGTTAGACTCATCCCAGCCGTCCACCTAATCCGACGCTCCAAACCCCACCCCCCAAAAATCCCAAAATTTTTCGCGATCCCGCGCCTTCCGCCAACTACAAATACCCCCGCGCCCCCAACCCGAAATCCCCACGCCTCAATTCAAAAAATCCATTCGAATTTCGCAGCAAAGAGATCGAGAGAGAGATCCATCAATCCATCATCCATGGCGCGCACGAAGCAGACGGCGAGGAAGTCGACCGGCGGGAAGGCGCCTCGGAAGCAGCTGGCGACGAAGGCGGCGCGGAAGTCGGCGCCGGCGACCGGCGGCGTGAAGAAGCCGCACCGCTTCCGGCCGGGCACGGTGGCACTCCGGGAGATCCGCAAGTACCAGAAGAGCACGGAGCTGCTGATCCGGAAGCTCCCGTTCCAGCGGCTGGTGCGGGAGATCGCGCAGGACTTCAAGACGGACCTCCGGTTCCAGTCGTCCGCCGTCGCCGCGCTGCAGGAGGCCGCCGAGGCCTACCTCGTCGGCCTCTTCGAGGACACCAACCTCTGCGCCATCCACGCCAAGCGCGTCACCATCATGCCCAAGGACATCCAGCTCGCCCGCCGCATCAGGGGCGAGAGGGCTTGA
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| Protein seq | MSVSTSNVAHQAAVRPEWAYAWAASSIGLKKSHHLRSHPRSSDVWVHRSSPIPSQPIASRPSPHPRIAAIVRLIPAVHLIRRSKPHPPKIPKFFAIPRLPPTTNTPAPPTRNPHASIQKIHSNFAAKRSRERSINPSSMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0419600 | RBH | 0.0 | 0.0 | 1.424254 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g34240 | RBH | 0.0 | 0.0 | 0.328913 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0542100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0013070 | RBH | 0.0 | 19.445164 | 0.776721 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0016050 | RBH | 1.729553 | 12.601567 | 11.513247 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0013610 | RBH | 0.0 | 8.576385 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0013250 | RBH | 0.0 | 0.678623 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0013580 | RBH | 0.0 | 18.102732 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0328200 | RBH | 23.0887645 | 5.8129575 | 4.633906 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0012490 | RBH | 0.0 | 2.433057 | 0.156006 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0325700 | RBH | 19.8778315 | 0.5334305 | 80.241936 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0013090 | RBH | 0.0 | 0.634512 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0012680 | RBH | 0.0 | 21.828081 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0012690 | RBH | 0.0 | 41.147335 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0013260 | RBH | 0.0 | 1.153272 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0013480 | RBH | 0.0 | 12.581990 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G012630 | RBH | 0.0 | 2.103662 | 2.122355 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0012630 | RBH | 0.0 | 19.166092 | 2.620677 |
