Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_04g0014810 | OGI:04064650 | 16/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr04:22205407-22208227 | ||||||||
| Gene Symbol | RH3.2A | ||||||||||
| DNA seq | tttaggtcattgtctccggaagtcagaaaggggaggaaaaggaactcgaagtcgccgccggatttgggatttggagagcgcgcgaggtaagaagattttcttctgcttcgatttttggttggtctaatctagttttgcggctgcttgattggtgatttgcttcctgttaatctcgctgcgtggcggtggcggctgcttcggtggggggtggttagatgggcggggggatttgaatggtacgctcgcggctagggtttgtgcactattcgtcgatttgatcgcttcgggggatttatcgtgttagttttaccttacgattagtttcgcttggttgtggatagtcgtgtgtacttcgtgcatggtttgttgctacgagattacatggttggaaacgcgtgattctatagcctacgagatttgcccatggctaattaggattttcctgcaaatctctacctgtgcaattagttgtatcaaatttctcttcgaaataattgattggtatcggtgtttgaggttttggtatgtggtgttgggttgggtgtggaagcgattacttcctactctataggttgatatacttgtcttcataatgtcagctttgaaataggaattgatttggattgtgtgtatatgtggtgagaatggaattctgtattagattgatcgtcaaacttgaatttgcatattgatgctttgtaatggcaaggtcaattttctcatataaatagtaattaattctggatttggattgtgtgtatacgtggtgagaatagaaatctgtattagattgatcgtcaaacttgaatatgcatattgatgcttttaaatggcaaggtcaattttctcatgtaaatagtaattaaccgctctagatttttgaactatattgtcatgttacttcaatcatctgtgaatagaacatcccattaattagtggctttattgcattcaaaattggtcaggacctgtcactcctttccatcttgcatgctcaacatcttagtatgttatatgccacctgtcactcctttccatcttgcatgctcaacatcttagtatggttatatgctgtctgtaggtgttacatgttatatgactgcaaatcttttagctactgctcatgttttgggggaactaaagattaggttcgtaattttagaaactggtgtgggagtaataagaaaatagatctagggatgttgaactggctacatttcctgctgcTttttttttttttttgaaatttaggtgccggtaatgcttttcttcactgctagagatggcaatggggaatcactgcagttggtatattttagtatttggaaaagctatcgtagtcctatgattgttactggtaaaatttaccctgctgtgtttatttgtgagcaatgatttccctgtatagctcttttatgaagaatcatagttataacgacctttgattccttttgcaaaattgtctcatatgatttaagtttgtgaatgcaatagaaattataaactggttagtcatagtcgttcagactttttgcttaattgcaaacttgataatatgctagtttgttggcaacaagcaaacactttttgtgtaccgtcatctgaaagttgtggctgtgtgatgtcttgagtccttgactatgcgcattgttgatcatgtcccttgtttttgtcctcaggtaaaccaaagttctttttccgatggctcgtactaagcaaactgctcgcaagtcaactggaggaaaggctcccaggaagcaacttgccaccaaggtatgtttttcgacatgataccctgcacatatcaattgccagggtgttaatactgttgaactgtgctaaacttactgctagcgttttgattatgtcagtatgtttgcttgacaatgcattacttgtttgtggtcttgacaggctgctcgtaagtctgctcccacaactggaggagtgaagaagcctcaccgttaccgccctggaactgttgctcttcggtgtgtaaaagcatttagtacttgttatctgagttacttgtaattagtttgctgatggcaagttattaaaacaccatgcctgactgcagtgaaatccgcaagtaccagaagagcactgagctgctcataaggaagcttccattccagaggcttgttagggagattgcccaggattttaaggtgagatttatacattctgttgtgctaatgtgcttgtgttgtcgcacacgtgcagtaagctaatagcattttctcacactgttctatttgtgcagactgatcttcgtttccagagccatgcggtgcttgcccttcaggaagctgccgaggcgtacctggtgggtctcttcgaggacaccaacctgtgcgccatccatgccaagcgtgtgaccatcatgcccaaggacattcagctggctaggaggatccgtggtgagagggcttaggctttctcatctctgggaggggctctggtgtttcatctgtgactacttcctgcttttgctgctgaactcttatttggtgtcgtgaatggtgctaataccactcacatgtagtagtagattgttagtgaagtactctgtttctgtgttctagaactggatattttgctagtaagttgtctcgactgttgatttcatccatccatctgatggatgtgtatctagtagtttctcatctgaagtcctgaaatctgaaccttgaatttacctgtggaatggaacttagaaaaactgtgtcaaatgttcaaagatcttggcatgaatggtttgtttcgattttatccgaatgcaatactaggtggaattggatactggaatggttaggcg
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| CDS seq | atgcttttcttcactgctagagatggcaatggggaatcactgcagttggctgctcgtaagtctgctcccacaactggaggagtgaagaagcctcaccgttaccgccctggaactgttgctcttcgtgaaatccgcaagtaccagaagagcactgagctgctcataaggaagcttccattccagaggcttgttagggagattgcccaggattttaagactgatcttcgtttccagagccatgcggtgcttgcccttcaggaagctgccgaggcgtacctggtgggtctcttcgaggacaccaacctgtgcgccatccatgccaagcgtgtgaccatcatgcccaaggacattcagctggctaggaggatccgtggtgagagggcttag |
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| Protein seq | MLFFTARDGNGESLQLAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA |
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| Function | Histone H3.3 [UniProtKB/Swiss-Prot:Q71H73] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_04g0014810 | OsNaBo_04g0014810.01 | Chr04 | 22206667 | 22208227 | + | NAM | ||
| CDS seq | atgcttttcttcactgctagagatggcaatggggaatcactgcagttggctgctcgtaagtctgctcccacaactggaggagtgaagaagcctcaccgttaccgccctggaactgttgctcttcgtgaaatccgcaagtaccagaagagcactgagctgctcataaggaagcttccattccagaggcttgttagggagattgcccaggattttaagactgatcttcgtttccagagccatgcggtgcttgcccttcaggaagctgccgaggcgtacctggtgggtctcttcgaggacaccaacctgtgcgccatccatgccaagcgtgtgaccatcatgcccaaggacattcagctggctaggaggatccgtggtgagagggcttag
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| Protein seq | MLFFTARDGNGESLQLAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_04g0014810 | OsNaBo_04g0014810.02 | Chr04 | 22205407 | 22208146 | + | IsoSeq | ||
| CDS seq | atgcggtgcttgcccttcaggaagctgccgaggcgtacctggtgggtctcttcgaggacaccaacctgtgcgccatccatgccaagc |
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| Protein seq | MRCLPFRKLPRRTWWVSSRTPTCAPSMPS |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 18.767223 | 141.899261 | 63.783527 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0419600 | SBH | 0.0 | 0.0 | 1.424254 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g34240 | SBH | 0.0 | 0.0 | 0.328913 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0419600 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0015170 | RBH | 4.450288 | 41.585793 | 14.945023 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0016050 | RBH | 1.729553 | 12.601567 | 11.513247 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0015770 | RBH | 11.145866 | 55.701900 | 30.209215 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0015350 | RBH | 2.837512 | 2.863550 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0015660 | RBH | 31.739286 | 90.534637 | 69.927734 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0351100 | RBH | 43.6614015 | 195.826103 | 163.6042025 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0014520 | RBH | 1.730691 | 6.809757 | 7.690053 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0347800 | RBH | 56.1737385 | 106.085949 | 162.58477 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0015130 | RBH | 4.009007 | 3.690323 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0014860 | RBH | 4.771387 | 63.553528 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0014900 | RBH | 26.680096 | 140.946228 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0015500 | RBH | 16.907036 | 14.491611 | 22.944801 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0015640 | RBH | 7.101316 | 76.214569 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G014750 | RBH | 5.212667 | 21.689011 | 18.290079 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0004300 | SBH | 0.000000 | 14.427197 | 0.000000 |
