Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsMH63_04G0116600 | OGI:04025710 | 6/16 | Minghui 63 | MH63RS3 | HZAU | Chr04:7447157-7448429 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TCACCCTTGCCCGCGAGGGGCTTGTTGGCGGATGGCATGAGTCCCTTCGATCGAATCTGCCGAAACCCATGGCGAAGACCACGAGCCAAGGATGATGCGAGGCGAAGGGTCACGTGAGTGCATGCCGAAGAAGGACGACTTCGCCAGGACCGGTTCGCCCCGGCATCCAGCCCAGAGAAGGACGGCTTCGCTAGGTCCAGTTCGCCCCCGCGAGGGCCGAAGTAGCTTTCTCGGCCCACCAAGCTTAGAGGCCATAGGGCCGGCGATCGCCCGATGGCCCATCAAGGGCCCATGAGCCCCCTTGACGTTATGTAACCCTGTAAACGTCCTTTTCATAAGGGCAACTATGTAAATTCCTCTGTACAACCTAGACCCTAGAAGTGAGAATCTGTAACGGGGCTATAAATAGCCCCCAAGGGCCATGTAATAAAGGGGAAGAAATCCAAGAAATCAATATACTTCGTTTCTTTCCAACCACTGTTAAGTAACCACGTCTTTCGACGTATGCGGTTGTCGTTTCGACAACAGACATGTTGAAAATTAACTCAGGTACTGGTCCAGAGAAGTGGTTATATGCTATCTCCAGGTGTTGAAGGATGGGCAAAGTGCCGATACCAACTGGTATTGTTCCTGACAAACTGTTATTGCCAAAGTTTAGATATTTTAGCTTAGCGGTGTTGTTGAACAGATCATTGGGTACCGGTCCAGTCAAATAATTCACTACCAAATCTACGTACCTAAGGTTGCGAAGATTCTGCAGCTCACGTGGCATTTGCCCAGAGAGGCTGTTATACCCTATATCAATGGTTTCAAGCCTTGTGAGGTTTCCTATCACGGGTGGAATGACGCCCAACAAGCTATTTATGCGGAGAACAAGAACCTCAAGACGACGCAGCTTTCCGAGATCGGCTGGGATGGTGCCGGTGAGTCCCGTGCTAGTGAGGTTGAGGATAGTGAGGAAAGAGAGGTTACCAAGATGAGGTGAGGTGCTCCCCTGGAGTGGCACATCGTGCAGCACAAGGGCAACAACCCGTGCCCGGCGGCGACCGCACGACACGCCGAGTCAGTCACAGAAGGGTGTGGCAGTAGTCCGGTTGGATAGAACGTCGCGAGGGTCGGCGAGCTGGGCTTTGAAATCCAGCAGCGCGGCAACGTCTGTGTCACTGCCGTTGCCGGCGGTGACACTGTCTGGGGTCGAAGCAATGGCAATAGTAGTACTAGATGCTAAAAACCAGAGGGATAGTAGCAGCGTAATCATGATCGAAGTGGCCAT
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| CDS seq | ATGGCCACTTCGATCATGATTACGCTGCTACTATCCCTCTGGTTTTTAGCATCTAGTACTACTATTGCCATTGCTTCGACCCCAGACAGTGTCACCGCCGGCAACGGCAGTGACACAGACGTTGCCGCGCTGCTGGATTTCAAAGCCCAGCTCGCCGACCCTCGCGACGGGAGCACCTCACCTCATCTTGGTAACCTCTCTTTCCTCACTATCCTCAACCTCACTAGCACGGGACTCACCGGCACCATCCCAGCCGATCTCGGAAAGCTGCGTCGTCTTGAGGTTCTTGTTCTCCGCATAAATAGCTTGTTGGGCGTCATTCCACCCGTGATAGGAAACCTCACAAGGCTTGAAACCATTGATATAGGGTATAACAGCCTCTCTGGGCAAATGCCACGTGAGCTGCAGAATCTTCGCAACCTTAGTTTGTCAGGAACAATACCAGTTGGTATCGGCACTTTGCCCATCCTTCAACACCTGGAGATAGCATATAACCACTTCTCTGGACCAGTACCTGAGTTAATTTTCAACATGTCTGTTGTCGAAACGACAACCGCATACGTCGAAAGACGTGGTTACTTAACAGTGGTTGGAAAGAAACGAAGGTTACATAACGTCAAGGGGGCTCATGGGCCCTTGATGGGCCATCGGGCGATCGCCGGCCCTATGGCCTCTAAGCTTGGTGGGCCGAGAAAGCTACTTCGGCCCTCGCGGGGGCGAACTGGACCTAGCGAAGCCGTCCTTCTCTGGGCTGGATGCCGGGGCGAACCGGTCCTGGCGAAGTCGTCCTTCTTCGGCATGCACTCACGTGACCCTTCGCCTCGCATCATCCTTGGCTCGTGGTCTTCGCCATGGGTTTCGGCAGATTCGATCGAAGGGACTCATGCCATCCGCCAACAAGCCCCTCGCGGGCAAGGGTGA
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| Protein seq | MATSIMITLLLSLWFLASSTTIAIASTPDSVTAGNGSDTDVAALLDFKAQLADPRDGSTSPHLGNLSFLTILNLTSTGLTGTIPADLGKLRRLEVLVLRINSLLGVIPPVIGNLTRLETIDIGYNSLSGQMPRELQNLRNLSLSGTIPVGIGTLPILQHLEIAYNHFSGPVPELIFNMSVVETTTAYVERRGYLTVVGKKRRLHNVKGAHGPLMGHRAIAGPMASKLGGPRKLLRPSRGRTGPSEAVLLWAGCRGEPVLAKSSFFGMHSRDPSPRIILGSWSSPWVSADSIEGTHAIRQQAPRGQG |
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| Function | LRR receptor-like serine/threonine-protein kinase EFR [UniProtKB/Swiss-Prot:C0LGT6] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsMH63_04G0116600 | OsMH63_04T0116600.1 | Chr04 | 7447157 | 7448429 | - | maker | ||
| CDS seq | ATGGCCACTTCGATCATGATTACGCTGCTACTATCCCTCTGGTTTTTAGCATCTAGTACTACTATTGCCATTGCTTCGACCCCAGACAGTGTCACCGCCGGCAACGGCAGTGACACAGACGTTGCCGCGCTGCTGGATTTCAAAGCCCAGCTCGCCGACCCTCGCGACGGGAGCACCTCACCTCATCTTGGTAACCTCTCTTTCCTCACTATCCTCAACCTCACTAGCACGGGACTCACCGGCACCATCCCAGCCGATCTCGGAAAGCTGCGTCGTCTTGAGGTTCTTGTTCTCCGCATAAATAGCTTGTTGGGCGTCATTCCACCCGTGATAGGAAACCTCACAAGGCTTGAAACCATTGATATAGGGTATAACAGCCTCTCTGGGCAAATGCCACGTGAGCTGCAGAATCTTCGCAACCTTAGTTTGTCAGGAACAATACCAGTTGGTATCGGCACTTTGCCCATCCTTCAACACCTGGAGATAGCATATAACCACTTCTCTGGACCAGTACCTGAGTTAATTTTCAACATGTCTGTTGTCGAAACGACAACCGCATACGTCGAAAGACGTGGTTACTTAACAGTGGTTGGAAAGAAACGAAGGTTACATAACGTCAAGGGGGCTCATGGGCCCTTGATGGGCCATCGGGCGATCGCCGGCCCTATGGCCTCTAAGCTTGGTGGGCCGAGAAAGCTACTTCGGCCCTCGCGGGGGCGAACTGGACCTAGCGAAGCCGTCCTTCTCTGGGCTGGATGCCGGGGCGAACCGGTCCTGGCGAAGTCGTCCTTCTTCGGCATGCACTCACGTGACCCTTCGCCTCGCATCATCCTTGGCTCGTGGTCTTCGCCATGGGTTTCGGCAGATTCGATCGAAGGGACTCATGCCATCCGCCAACAAGCCCCTCGCGGGCAAGGGTGA
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| Protein seq | MATSIMITLLLSLWFLASSTTIAIASTPDSVTAGNGSDTDVAALLDFKAQLADPRDGSTSPHLGNLSFLTILNLTSTGLTGTIPADLGKLRRLEVLVLRINSLLGVIPPVIGNLTRLETIDIGYNSLSGQMPRELQNLRNLSLSGTIPVGIGTLPILQHLEIAYNHFSGPVPELIFNMSVVETTTAYVERRGYLTVVGKKRRLHNVKGAHGPLMGHRAIAGPMASKLGGPRKLLRPSRGRTGPSEAVLLWAGCRGEPVLAKSSFFGMHSRDPSPRIILGSWSSPWVSADSIEGTHAIRQQAPRGQG
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0 | 0 | 0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_Ung0002710 | SBH | 0.000000 | 0.000000 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0004860 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0004750 | RBH | 0.0 | 0.0 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0024800 | SBH | 0.009890 | 0.000000 | 0.012598 |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0024650 | SBH | 0.008922 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0024760 | SBH | 0.027641 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0004560 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0004840 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
