Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_04g0004560 | OGI:04025710 | 6/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr04:7929552-7930072 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | tcaaaaggagtcagggatcctaccaaacaacaggttggcagagagatcaatcgtgtcaatatgatttagctgcgctatatcaactggcaatgcaccttccaaggagttctaagacagatcaatagttatcaagctattcatgtggaataggcttgccggtatggttgatggcatatgatttcttagatagaacaagatattgtagattatccaagatcgtttggtagcacactagagaagttgttgttattgagtaatagtgtttgtaggttccttagatgacctatttgtcttgggattgtgccagacatcatgtttccagagagattaataacttggagcttgtccattagcatgattgattctggaatattgccagtcaattgattttctgataggtctaactcaatgaggttgcttaaatttgatagggtagaaggaatctcaccggacaacttgtttcctacggcaaagaaatttaccagagtacttgagaagtttccgacatagtcagggagctt
More
|
||||||||||
| CDS seq | atgctaatggacaagctccaagttattaatctctctggaaacatgatgtctggcacaatcccaagacaaataggtcatctaaggaacctacaaacactattactcaataacaacaacttctctagtaactccttggaaggtgcattgccagttgatatagcgcagctaaatcatattgacacgattgatctctctgccaacctgttgtttggtaggatccctgactccttttga |
||||||||||
| Protein seq | MLMDKLQVINLSGNMMSGTIPRQIGHLRNLQTLLLNNNNFSSNSLEGALPVDIAQLNHIDTIDLSANLLFGRIPDSF |
||||||||||
| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_04g0004560 | OsLiXu_04g0004560.01 | Chr04 | 7929552 | 7930072 | - | NAM | ||
| CDS seq | atgctaatggacaagctccaagttattaatctctctggaaacatgatgtctggcacaatcccaagacaaataggtcatctaaggaacctacaaacactattactcaataacaacaacttctctagtaactccttggaaggtgcattgccagttgatatagcgcagctaaatcatattgacacgattgatctctctgccaacctgttgtttggtaggatccctgactccttttga
More
|
|||||||
| Protein seq | MLMDKLQVINLSGNMMSGTIPRQIGHLRNLQTLLLNNNNFSSNSLEGALPVDIAQLNHIDTIDLSANLLFGRIPDSF |
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0227000 | SBH | 0.722917 | 0.598978 | 0.390265 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g15600 | SBH | 0.0 | 0.0 | 0.000000 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0227000 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0004860 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0004750 | RBH | 0.0 | 0.0 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0116600 | RBH | 0 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0004920 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0004830 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
