Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_04g0227000 | OGI:04027980 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr04:8507962-8511064 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | AGCTCTTGCAGTTCTTTGTTCTTCAGCACCCTGACTGCCTAGAGCCCTAGACACAATGATTCGGATGTTGTCCATGCTGTGTAGTTTACTCATCTTTACCTTCTTCAGCACCGCAATACTTGCAGCAGCACAATCAAACAAGTCCGAGAGTGATCGGAAAGCCCTCCTTTGCTTCAAGTCCGGCATCTTGTTGGACCTGGATGGTGTCCTAAGTTCATGGATGGACGACTCACTCAATTTCTGCAGTTGGAGAGGGGTCACTTGCAGCTCATCATATCCATCCCGTGTGGTACATCTAGAACTCAGTTCTTCACATCTCACTGGGAGGATATCTGGTTGCATAGGCAACCTGACTTCTCTATCTCAGATAAATCTTACGGATAATCATCTGTCTGGGGCCATCCCTGATGAACTGGGCAAACTTCCTGTCCTCCGCACTCTGTTGCTTGCTGCAAACAACCTTGAAGGTGACATCCCTGATTCACTTGGTACTAGTTTGTCTCTCAGCTATGTCAATCTTGCAAACAATACTCTTACTGGTGTTATCCCTGATTCTTTAGCAAGTAGCCCCTCTCTCAACATGCTGATCCTGTCACGTAACAACCTGTCTGGACAAATTCCAGCCAAACTTTTTTCTAACTCATCCAAACTTACAATAGCTTGGTTGGTTTTGTCCCATTATCTCTTTACAACATGTCATCACTCACATACTTTAGCCTGGGTAACAATCGCCTTGTTGGGCAGATACCATCTGACATTGGTAACTCTTTACCAAAGCTCCAGATTCTGAAATTCCAAAACAGCAAGTTTGAGGGTCAAATCCCTACATCATTATCCAATGCAACGAATCTCATACAGCTTGATCTCTCAAACAACTTGATGCATGGCTCTATCCCATCTCTTGGATTGTTGGCCAATTTGAATCAAGTTCGTTTAGGAAAGAATTCTCTAGAAGCAGATCATTGGGCGTTTCTTGCATCTATGGAAAATTGTACGGAGCTGATTGAATTGTCCTTGCAATGGAATCTGCTAGATGGAATTTTACCCAGCTCTGTCAGTAATATTTCTACGAACCTGCAAGCTTTAGTTCTTCGTGGGAACCAAATTTCTGGGAGAATACCTTCGACGATTGGAAAATTGCACAACTTGTATATTCTGGACCTATCCATAAACAAATTATCAGGTCAAATCCCATCCACAATCGGCAACATTTCTCACCTGGGACATTTTTTTCTTGATGATAACAACTTGAGTGGAAATATACCTATTAGTATATGGCAGTGCACCGAACTTCTTGAACTCAATTTTTCTATCAATGATCTTAGTGGACTGATACCTTCTGACTTAAGTAGTTCTCCATTCTACTCTAGAGGCTCTACCCTCTTGGTTGTGGACTTTTCACACAATAATCTTACAGGACAAATTCCTGAAAGTTTTGGGTCAAATAATATGCAACAAGTTAATCTTTCTCGAAATGAATTATCTGGTCCTCTGCCTGAATTCTTTCGGCGCATGACCATGTTGGAGCTACTTGATCTGTCTTACAACAATTTCGAAGGGCCAATTCCAACTGATTGCTTTTTCCAAAACACGAGTGCCGTATTTTTGGAAGGAAATAAGAAGCTCTATTCAAAGTCGTCAACAGTATCATTTCCAATTTGTGGTAGCACATCTGACAGTACAAAAAGCAACAATGAGGCATCATTGACCAAGAAGATCCATTTGCCTTTGCAGGTAATTGTGTTGCTAATTTTAGTACCACCACTTACTATTCTTCTGTTTTTGGTTTCATGGGTTCTTGTCACTCTTTGGAAGAGAAGGGTGTTTTCATTTTCACAGTGTAGTGATCTGTTCAAAAGGTGCAATTATGTGCTCAACTGGTGCAGTGGCATGCCCAGTATGCTTGGTTTGCCCCAGCCAAAGAGAAGAAGAGTGCCTATACCTCCAAGCAACAATGGGACACTCAAGAAGGTCTCATACAGTGACATCATTAAAGCTACCAATTGGTTTTCTTCAAACCATAAAATTAGTTCAACCCAAACTGGATCAATTTATGTTGGTAGGTTTAAGTCTGAGAAACGCCTAGTTGCCATTAAAGTATTCAACTTGAATCAACCTGGTGCATATGAGAGTTATTTTATTGAGTGTGAGGTGCTACGAAGCACTCGCCATAGAAACATAATGCGGCCACTGACCCTATGCTCAACATTGGACCACGAAAACCATGAGTTCAAGGCACTAATCTTCAAGTTCATGGTTAATGGTAGCCTTGAAAGATGGTTGCACTCTGAGCAGCACAATGGAATCCCAGATAGAGTACTATGCTTAGGCCAGAGGATATCCATTGCAACTGATGTGGCCACTGCTCTTGATTACATCCACAACCATGTAATGCCTCCTTTGGTCCATTGTGATTTGAAGCCGAGCAATATCCTCTTGGATGTTGACATAACCGCGCTTCTTGGTGACTTTGGATCAGCAAAGTTTCTATTTCCTGATCTGGTCAGTCCAGAAAGCTTGGCTGATATAGGAGGAACAATTGGATACATTGCACCAGGTGTGTTCCTATTTTTATCTCTCTTCTTAACTATGTTTTTTTGTTGATATAACTGCAGTAATTCAACGTAGCAATTAATTTGTACAGAGTATGGAATGGGCAGTCAAATCTCAACGGGAGGCGATGTGTATAGTTTTGGAGTGCTACTTCTGGAAATGCTTACAGGAAAGCAGCCAACTGATGATACATTTGCGGATGGAGTTAGCATTCACAACTTTGTTGACTCCATGTTCCCAGATAGAGTTGCAGAGATTCTAGATCCCTATATGACGCACGAGGAGCACCAAGTGTATACAGCAGAATGGTTGGAGGCCTGTATTAAGCCGTTAGTTGCACTTGGCCTGTCATGTTCCATGGTATCTTCGAAAGACAGACCTGGAATGCAAGATGTCTGTGCGAAACTTTGTGCAGTCAAAGAAACTTTTCTGCAGTTTGGCGATTTCAGTTTGTGATAGAAGTTCTGTAATTGCAGGCATACATGAAACTTTTAACCAGGCAGCATGTGAGCTTATTCGTTTAAATTCATATATATAATTTTCAGGGAGG
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| CDS seq | ATGATTCGGATGTTGTCCATGCTGTGTAGTTTACTCATCTTTACCTTCTTCAGCACCGCAATACTTGCAGCAGCACAATCAAACAAGTCCGAGAGTGATCGGAAAGCCCTCCTTTGCTTCAAGTCCGGCATCTTGTTGGACCTGGATGGTGTCCTAAGTTCATGGATGGACGACTCACTCAATTTCTGCAGTTGGAGAGGGGTCACTTGCAGCTCATCATATCCATCCCGTGTGGTACATCTAGAACTCAGTTCTTCACATCTCACTGGGAGGATATCTGGTTGCATAGGCAACCTGACTTCTCTATCTCAGATAAATCTTACGGATAATCATCTGTCTGGGGCCATCCCTGATGAACTGGGCAAACTTCCTGTCCTCCGCACTCTGTTGCTTGCTGCAAACAACCTTGAAGGTGACATCCCTGATTCACTTGGTACTAGTTTGTCTCTCAGCTATGTCAATCTTGCAAACAATACTCTTACTGGTGTTATCCCTGATTCTTTAGCAAGTAGCCCCTCTCTCAACATGCTGATCCTGTCACGTAACAACCTGTCTGGACAAATTCCAGCCAAACTTTTTTCTAACTCATCCAAACTTACAATAGCTTGGTTGGTTTTGTCCCATTATCTCTTTACAACATGTCATCACTCACATACTTTAGCCTGGGTAACAATCGCCTTGTTGGGCAGATACCATCTGACATTGGTAACTCTTTACCAAAGCTCCAGATTCTGA
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| Protein seq | MIRMLSMLCSLLIFTFFSTAILAAAQSNKSESDRKALLCFKSGILLDLDGVLSSWMDDSLNFCSWRGVTCSSSYPSRVVHLELSSSHLTGRISGCIGNLTSLSQINLTDNHLSGAIPDELGKLPVLRTLLLAANNLEGDIPDSLGTSLSLSYVNLANNTLTGVIPDSLASSPSLNMLILSRNNLSGQIPAKLFSNSSKLTIAWLVLSHYLFTTCHHSHTLAWVTIALLGRYHLTLVTLYQSSRF |
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| Function | Protein NSP-INTERACTING KINASE 2 [UniProtKB/Swiss-Prot:Q8RY65] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_04g0227000 | OsNip_04t0227000-01 | Chr04 | 8507962 | 8511064 | + | RAP2018-11-26 | ||
| CDS seq | ATGATTCGGATGTTGTCCATGCTGTGTAGTTTACTCATCTTTACCTTCTTCAGCACCGCAATACTTGCAGCAGCACAATCAAACAAGTCCGAGAGTGATCGGAAAGCCCTCCTTTGCTTCAAGTCCGGCATCTTGTTGGACCTGGATGGTGTCCTAAGTTCATGGATGGACGACTCACTCAATTTCTGCAGTTGGAGAGGGGTCACTTGCAGCTCATCATATCCATCCCGTGTGGTACATCTAGAACTCAGTTCTTCACATCTCACTGGGAGGATATCTGGTTGCATAGGCAACCTGACTTCTCTATCTCAGATAAATCTTACGGATAATCATCTGTCTGGGGCCATCCCTGATGAACTGGGCAAACTTCCTGTCCTCCGCACTCTGTTGCTTGCTGCAAACAACCTTGAAGGTGACATCCCTGATTCACTTGGTACTAGTTTGTCTCTCAGCTATGTCAATCTTGCAAACAATACTCTTACTGGTGTTATCCCTGATTCTTTAGCAAGTAGCCCCTCTCTCAACATGCTGATCCTGTCACGTAACAACCTGTCTGGACAAATTCCAGCCAAACTTTTTTCTAACTCATCCAAACTTACAATAGCTTGGTTGGTTTTGTCCCATTATCTCTTTACAACATGTCATCACTCACATACTTTAGCCTGGGTAACAATCGCCTTGTTGGGCAGATACCATCTGACATTGGTAACTCTTTACCAAAGCTCCAGATTCTGA
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| Protein seq | MIRMLSMLCSLLIFTFFSTAILAAAQSNKSESDRKALLCFKSGILLDLDGVLSSWMDDSLNFCSWRGVTCSSSYPSRVVHLELSSSHLTGRISGCIGNLTSLSQINLTDNHLSGAIPDELGKLPVLRTLLLAANNLEGDIPDSLGTSLSLSYVNLANNTLTGVIPDSLASSPSLNMLILSRNNLSGQIPAKLFSNSSKLTIAWLVLSHYLFTTCHHSHTLAWVTIALLGRYHLTLVTLYQSSRF
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.722917 | 0.598978 | 0.390265 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0227200 | RBH | 0.000000 | 0.000000 | 0.000000 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g14570 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0227000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0004980 | RBH | 0.244290 | 0.967602 | 2.680362 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0005610 | SBH | 0.153115 | 0.776981 | 0.993871 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0005230 | RBH | 0.295748 | 0.296784 | 3.057565 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0005050 | SBH | 0.056989 | 0.043205 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0005030 | RBH | 0.251778 | 0.0 | 1.637198 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0128200 | RBH | 0.4251075 | 0.1339665 | 0.022335 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0005060 | RBH | 0.072246 | 0.0 | 0.133967 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0134800 | RBH | 0.77421 | 0.276208 | 0.0682025 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0004860 | RBH | 0.032235 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0005230 | RBH | 0.000000 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0004980 | RBH | 0.916629 | 2.456911 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0004810 | RBH | 0.000000 | 0.000000 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0005130 | RBH | 0.089088 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G005150 | RBH | 0.042369 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0004970 | RBH | 0.737848 | 0.000000 | 0.378911 |
