Basic Info

Gene ID OGI # | Score   Accession | Assembly | Annotation Location Links
OsIR64_04g0005060 OGI:04027980 | 16/16 IR 64 | OsIR64RS1 | Gramene(+IsoSeq) Chr04:7556764-7560098
Gene Symbol -
DNA seq

AGCTCTTGCAGTTCTTTGTTCTTCAGCACCCTGACTGCCTAGAGCCCTAGACACAATGATTCGGATGTTGTCCATGCTGTGTAGTTTACTCATCTTTACCTTCTTCAGTACTGCAATACTTGCAGCAGCACAATCAAACAAGTCCGAGAGTGATCGGAAAACCCTCCTTTGCTTCAAGTCCGGCATCTTGTTGGACCTGGATGGTGTCCTAAGTTCATGGATGGACGAGTCACTCAATTTCTGCAGTTGGAGAGGGGTCACTTGCAGCTCATCATATCCATCCCGTGTGGTACATCTAGAACTCAATTCTTCACATCTCACTGGGAGGATATCTGGTTGCATAGGCAACCTGACTTCTCTATCTCAGATAAATCTTACGGATAATCATCTGTCTGGGGCCATCCCTGATGAACTGGGCAAACTTCTTGTCCTCCGCACTCTGTTGCTTGCTGCAAACAACCTTCAAGGTGACATCCCTGATTCACTTGGTACTAGTTTGTCTCTCAGCTATGTCAATCTTGCAAACAATACTCTTACTGGTGTTATCCCTGATTCTTTAGCAAGTAGCCCCTCTCTCAGCATGCTGATCCTGTCACGTAACAACCTGTCTGGACAAATTCCAGCCAAACTTTTTTCTAACTCATCCAAACTTACCAAGATTGATCTCCAGATGAATTCTTTGTCTGGACCTATACCAGCTTTTGAGAATGTAACAACCCTCAACTTTCTTTGCCTGACAGATAACTCACTTTCTGGAAACATACCCCCTTCCATAGGAACGCTTCTTCCCTTGCATCTATATTACTAAGTCAGAATAAATTAGCTGGATTAATTCCGATGACTTTGAGTCACATCCCAGAACTTATTGAATTGGATCTTAGTTACAATAGCTTGGTTGGTTTTGTCCCATTATCTCTTTACAACATGTCATCACTCACATACTTTAGCCTGGGTAACAATCGCCTTGTTGGGCAGATACCATCTGACATTGGTAACTCTTTACCAAAGCTCCAGATTCTGAAATTCCAAAACAGCAAGTTTGAGGGTCAAATCCCTACATCATTATCCAATGCAACGAATCTCATACAGCTTGATCTCTCAAACAACTTGATGCATGGCTCTATCCCATCTCTTGGATTGTTGGCCAATTTGAATCAAGTTCGTTTAGGAAAGAATTCTCTAGAAGCAGATCATTGGGCGTTTCTTGCATCTATGGAAAATTGTACGGAGCTGATTGAATTGTCCTTGCAATGGAATCTGCTAGATGGAATTTTACCCAGCTCTGTTGGTAATATTTCTACGAACCTGCAAGCTTTAGTTCTTCGTGGGAACCAAATTTCTGGGAGAATACCTTCGACGATTGGAAAATTGCACAACTTGTATATTCTGGACCTATCCATAAACAAATTATCAGGTCAAATCCCATCCACAATCGGCAACATTTCTCACCTGGGACATTTTTTTCTTGATGATAACAACTTGAGTGGAAATATACCTATTAGTATATGGCAGTGCACCGAACTTCTAGAACTCAATTTTTCTATCAATGATCTTAGTGGACTGATACCTTCTGACTTAAGTAGCTCTCCATTCTACTCTAGAGGCTCTACCCTCTTGGTTGTGGACTTTTCACACAATAATCTTACAGGACAAATTCCTGAAAGTTTTGGGTCAAATAATATGCAACAAGTTAATCTTTCTCGAAATGAATTATCTGGTCCTGTGCCTGAATTCTTTCGGCGCATGACCATGTTGGAGCTACTTGATCTGTCTTACAACAATTTCGAAGGGCCAATTCCAACTGATTGCTTTTTTCCAAAACGCGAGTGCCGTATTTTTGGAAGGAAATAAGAAGCTCTATTCAAAGTCGTCAACAGTATCATTTCCAATTTGTGGTAGCACATCTGACAGTACAAAAAGCAACAGTGGGGCATCATTGACCAAGAAGATCCATTTGCCCTTGCGGGTAATTTTGTTGCTAATTTTAGTACCACCACTTACTATTCTTCTCTGTTTGGTTTCATGGGTTCTTGTCACTCTTTGGAAGAGAAGGGTGTTTTCATTTTCACAGTGTAGTGATCTGTTCAAAAGGTGCAATTATGTGCTCAACTGGTGCAGTGGCATGCCCAGTATGCTTTGTTTGCCCCAGCCAAAGAGAAGAAGAGTGCCTATACCTCCAAGCAACAATGGGACACTCAAGAAGGTCTCATACAGTGACATCATTAAAGCTACCAATTGGTTTTCTTCAAACCATAAAATTAGTTCAACCCAAACTGGATCAATTTATGTTGGTAGGTTTAAGTCTGAGAAACGCCTAGTTGCCATTAAAGTATTCAACTTGAATCAACCTGGTGCATATGAGAGTTATTTTATTGAGTGTGAGGTGCTACGAAGCACTCGCCATAGAAACATAATGCGGCCACTGACCCTATGCTCAACATTGGACCACGAAAACCATGAGTTCAAGGCACTAATCTTCAAGTTCATGGTTAATGGTAGCCTTGAAAGATGGTTGCACTCTGAGCAGCACAATGGAATCCCAGATAGAGTACTATGCTTAGGCCAGAGGATATCCATTGCAACTGATGTGGCTACTGCTCTTGATTACATCCACAACCATGTAATGCCTCCTTTGGTCCATTGTGATTTGAAGCCGAGCAATATCCTCTTGGATGTTGACATAACCGCGCTTCTTGGTGACTTTGGATCAGCAAAGTTTCTATTTCCTGATCTGGTCAGTCCAGAAAGCTTGGCTGATATAGGACGAACAATTGGATACATTGCACCAGGTGTGTTCCTATTTTTATCTCTCTTCTTAACTATGTTTTTTTGTTGATATAACTGCAGTAATTCAACGTAGCAATTAATTTGTACAGAGTATGGAATGGGCAGTCAAATCTCAACGGGAGGCGATGTGTATAGTTTTGGAGTGCTACTTCTGGAAATGCTTACAGGAAAGCAGCCAACTGATGATACATTTGCGGATGGAGTTAGCATTCACAACTTTGTTGACTCCATGTTCCCAGATAGAGTTGCAGAGATTCTAGATCCCTATATGACGCACGAGGAGCACCAAGTGTATACAGCAGAATGGTTGGAGGCCTGTATTAAGCCGTTAGTTGCACTTGGCCTGTCATGTTCCATGGTATCTCCGAAAGACAGGCCTGGAATGCAAGATGTCTGTGCGAAACTTTGTGCAGTCAAAGAAACTTTTCTGCAGTTTGGCGATTTCACTTTGTGATAGAAGTTCTGCAATTGCAGGCATACATGAAACTTTTAACCAGGCAGCATGTGAGCTTATTCGTTTAAATTCATATATATAATTTTCAGGGAGG

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CDS seq

ATGATTCGGATGTTGTCCATGCTGTGTAGTTTACTCATCTTTACCTTCTTCAGTACTGCAATACTTGCAGCAGCACAATCAAACAAGTCCGAGAGTGATCGGAAAACCCTCCTTTGCTTCAAGTCCGGCATCTTGTTGGACCTGGATGGTGTCCTAAGTTCATGGATGGACGAGTCACTCAATTTCTGCAGTTGGAGAGGGGTCACTTGCAGCTCATCATATCCATCCCGTGTGGTACATCTAGAACTCAATTCTTCACATCTCACTGGGAGGATATCTGGTTGCATAGGCAACCTGACTTCTCTATCTCAGATAAATCTTACGGATAATCATCTGTCTGGGGCCATCCCTGATGAACTGGGCAAACTTCTTGTCCTCCGCACTCTGTTGCTTGCTGCAAACAACCTTCAAGGTGACATCCCTGATTCACTTGGTACTAGTTTGTCTCTCAGCTATGTCAATCTTGCAAACAATACTCTTACTGGTGTTATCCCTGATTCTTTAGCAAGTAGCCCCTCTCTCAGCATGCTGATCCTGTCACGTAACAACCTGTCTGGACAAATTCCAGCCAAACTTTTTTCTAACTCATCCAAACTTACCAAGATTGATCTCCAGATGAATTCTTTGTCTGGACCTATACCAGCTTTTGAGAATAATAAATTAGCTGGATTAATTCCGATGACTTTGAGTCACATCCCAGAACTTATTGAATTGGATCTTAGTTACAATAGCTTGGTTGGTTTTGTCCCATTATCTCTTTACAACATGTCATCACTCACATACTTTAGCCTGGGTAACAATCGCCTTGTTGGGCAGATACCATCTGACATTGGTAACTCTTTACCAAAGCTCCAGATTCTGAAATTCCAAAACAGCAAGTTTGAGGGTCAAATCCCTACATCATTATCCAATGCAACGAATCTCATACAGCTTGATCTCTCAAACAACTTGATGCATGGCTCTATCCCATCTCTTGGATTGTTGGCCAATTTGAATCAAGTTCGTTTAGGAAAGAATTCTCTAGAAGCAGATCATTGGGCGTTTCTTGCATCTATGGAAAATTGTACGGAGCTGATTGAATTGTCCTTGCAATGGAATCTGCTAGATGGAATTTTACCCAGCTCTGTTGGTAATATTTCTACGAACCTGCAAGCTTTAGTTCTTCGTGGGAACCAAATTTCTGGGAGAATACCTTCGACGATTGGAAAATTGCACAACTTGTATATTCTGGACCTATCCATAAACAAATTATCAGTACCACCACTTACTATTCTTCTCTGTTTGGTTTCATGGGTTCTTGTCACTCTTTGGAAGAGAAGGGTGTTTTCATTTTCACAGTGTAGTGATCTGTTCAAAAGGTGCAATTATGTGCTCAACTGGTGCAGTGGCATGCCCAGTATGCTTTGTTTGCCCCAGCCAAAGAGAAGAAGAGTGCCTATACCTCCAAGCAACAATGGGACACTCAAGAAGGTCTCATACAGTGACATCATTAAAGCTACCAATTGGTTTTCTTCAAACCATAAAATTAGTTCAACCCAAACTGGATCAATTTATGTTGGTAGGTTTAAGTCTGAGAAACGCCTAGTTGCCATTAAAGTATTCAACTTGAATCAACCTGGTGCATATGAGAGTTATTTTATTGAGTGTGAGGTGCTACGAAGCACTCGCCATAGAAACATAATGCGGCCACTGACCCTATGCTCAACATTGGACCACGAAAACCATGAGTTCAAGGCACTAATCTTCAAGTTCATGGTTAATGGTAGCCTTGAAAGATGGTTGCACTCTGAGCAGCACAATGGAATCCCAGATAGAGTACTATGCTTAGGCCAGAGGATATCCATTGCAACTGATGTGGCTACTGCTCTTGATTACATCCACAACCATGTAATGCCTCCTTTGGTCCATTGTGATTTGAAGCCGAGCAATATCCTCTTGGATGTTGACATAACCGCGCTTCTTGGTGACTTTGGATCAGCAAAGTTTCTATTTCCTGATCTGGTCAGTCCAGAAAGCTTGGCTGATATAGGACGAACAATTGGATACATTGCACCAGAGTATGGAATGGGCAGTCAAATCTCAACGGGAGGCGATGTGTATAGTTTTGGAGTGCTACTTCTGGAAATGCTTACAGGAAAGCAGCCAACTGATGATACATTTGCGGATGGAGTTAGCATTCACAACTTTGTTGACTCCATGTTCCCAGATAGAGTTGCAGAGATTCTAGATCCCTATATGACGCACGAGGAGCACCAAGTGTATACAGCAGAATGGTTGGAGGCCTGTATTAAGCCGTTAGTTGCACTTGGCCTGTCATGTTCCATGGTATCTCCGAAAGACAGGCCTGGAATGCAAGATGTCTGTGCGAAACTTTGTGCAGTCAAAGAAACTTTTCTGCAGTTTGGCGATTTCACTTTGTGA

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Protein seq

MIRMLSMLCSLLIFTFFSTAILAAAQSNKSESDRKTLLCFKSGILLDLDGVLSSWMDESLNFCSWRGVTCSSSYPSRVVHLELNSSHLTGRISGCIGNLTSLSQINLTDNHLSGAIPDELGKLLVLRTLLLAANNLQGDIPDSLGTSLSLSYVNLANNTLTGVIPDSLASSPSLSMLILSRNNLSGQIPAKLFSNSSKLTKIDLQMNSLSGPIPAFENNKLAGLIPMTLSHIPELIELDLSYNSLVGFVPLSLYNMSSLTYFSLGNNRLVGQIPSDIGNSLPKLQILKFQNSKFEGQIPTSLSNATNLIQLDLSNNLMHGSIPSLGLLANLNQVRLGKNSLEADHWAFLASMENCTELIELSLQWNLLDGILPSSVGNISTNLQALVLRGNQISGRIPSTIGKLHNLYILDLSINKLSVPPLTILLCLVSWVLVTLWKRRVFSFSQCSDLFKRCNYVLNWCSGMPSMLCLPQPKRRRVPIPPSNNGTLKKVSYSDIIKATNWFSSNHKISSTQTGSIYVGRFKSEKRLVAIKVFNLNQPGAYESYFIECEVLRSTRHRNIMRPLTLCSTLDHENHEFKALIFKFMVNGSLERWLHSEQHNGIPDRVLCLGQRISIATDVATALDYIHNHVMPPLVHCDLKPSNILLDVDITALLGDFGSAKFLFPDLVSPESLADIGRTIGYIAPEYGMGSQISTGGDVYSFGVLLLEMLTGKQPTDDTFADGVSIHNFVDSMFPDRVAEILDPYMTHEEHQVYTAEWLEACIKPLVALGLSCSMVSPKDRPGMQDVCAKLCAVKETFLQFGDFTL

Function Probable LRR receptor-like serine/threonine-protein kinase At3g47570 [UniProtKB/Swiss-Prot:C0LGP4]

Transcripts

Gene Transcript Chromosome Start End Strand Source
OsIR64_04g0005060 OsIR64_04g0005060.01 Chr04 7556764 7560098 + NAM
CDS seq

ATGATTCGGATGTTGTCCATGCTGTGTAGTTTACTCATCTTTACCTTCTTCAGTACTGCAATACTTGCAGCAGCACAATCAAACAAGTCCGAGAGTGATCGGAAAACCCTCCTTTGCTTCAAGTCCGGCATCTTGTTGGACCTGGATGGTGTCCTAAGTTCATGGATGGACGAGTCACTCAATTTCTGCAGTTGGAGAGGGGTCACTTGCAGCTCATCATATCCATCCCGTGTGGTACATCTAGAACTCAATTCTTCACATCTCACTGGGAGGATATCTGGTTGCATAGGCAACCTGACTTCTCTATCTCAGATAAATCTTACGGATAATCATCTGTCTGGGGCCATCCCTGATGAACTGGGCAAACTTCTTGTCCTCCGCACTCTGTTGCTTGCTGCAAACAACCTTCAAGGTGACATCCCTGATTCACTTGGTACTAGTTTGTCTCTCAGCTATGTCAATCTTGCAAACAATACTCTTACTGGTGTTATCCCTGATTCTTTAGCAAGTAGCCCCTCTCTCAGCATGCTGATCCTGTCACGTAACAACCTGTCTGGACAAATTCCAGCCAAACTTTTTTCTAACTCATCCAAACTTACCAAGATTGATCTCCAGATGAATTCTTTGTCTGGACCTATACCAGCTTTTGAGAATAATAAATTAGCTGGATTAATTCCGATGACTTTGAGTCACATCCCAGAACTTATTGAATTGGATCTTAGTTACAATAGCTTGGTTGGTTTTGTCCCATTATCTCTTTACAACATGTCATCACTCACATACTTTAGCCTGGGTAACAATCGCCTTGTTGGGCAGATACCATCTGACATTGGTAACTCTTTACCAAAGCTCCAGATTCTGAAATTCCAAAACAGCAAGTTTGAGGGTCAAATCCCTACATCATTATCCAATGCAACGAATCTCATACAGCTTGATCTCTCAAACAACTTGATGCATGGCTCTATCCCATCTCTTGGATTGTTGGCCAATTTGAATCAAGTTCGTTTAGGAAAGAATTCTCTAGAAGCAGATCATTGGGCGTTTCTTGCATCTATGGAAAATTGTACGGAGCTGATTGAATTGTCCTTGCAATGGAATCTGCTAGATGGAATTTTACCCAGCTCTGTTGGTAATATTTCTACGAACCTGCAAGCTTTAGTTCTTCGTGGGAACCAAATTTCTGGGAGAATACCTTCGACGATTGGAAAATTGCACAACTTGTATATTCTGGACCTATCCATAAACAAATTATCAGTACCACCACTTACTATTCTTCTCTGTTTGGTTTCATGGGTTCTTGTCACTCTTTGGAAGAGAAGGGTGTTTTCATTTTCACAGTGTAGTGATCTGTTCAAAAGGTGCAATTATGTGCTCAACTGGTGCAGTGGCATGCCCAGTATGCTTTGTTTGCCCCAGCCAAAGAGAAGAAGAGTGCCTATACCTCCAAGCAACAATGGGACACTCAAGAAGGTCTCATACAGTGACATCATTAAAGCTACCAATTGGTTTTCTTCAAACCATAAAATTAGTTCAACCCAAACTGGATCAATTTATGTTGGTAGGTTTAAGTCTGAGAAACGCCTAGTTGCCATTAAAGTATTCAACTTGAATCAACCTGGTGCATATGAGAGTTATTTTATTGAGTGTGAGGTGCTACGAAGCACTCGCCATAGAAACATAATGCGGCCACTGACCCTATGCTCAACATTGGACCACGAAAACCATGAGTTCAAGGCACTAATCTTCAAGTTCATGGTTAATGGTAGCCTTGAAAGATGGTTGCACTCTGAGCAGCACAATGGAATCCCAGATAGAGTACTATGCTTAGGCCAGAGGATATCCATTGCAACTGATGTGGCTACTGCTCTTGATTACATCCACAACCATGTAATGCCTCCTTTGGTCCATTGTGATTTGAAGCCGAGCAATATCCTCTTGGATGTTGACATAACCGCGCTTCTTGGTGACTTTGGATCAGCAAAGTTTCTATTTCCTGATCTGGTCAGTCCAGAAAGCTTGGCTGATATAGGACGAACAATTGGATACATTGCACCAGAGTATGGAATGGGCAGTCAAATCTCAACGGGAGGCGATGTGTATAGTTTTGGAGTGCTACTTCTGGAAATGCTTACAGGAAAGCAGCCAACTGATGATACATTTGCGGATGGAGTTAGCATTCACAACTTTGTTGACTCCATGTTCCCAGATAGAGTTGCAGAGATTCTAGATCCCTATATGACGCACGAGGAGCACCAAGTGTATACAGCAGAATGGTTGGAGGCCTGTATTAAGCCGTTAGTTGCACTTGGCCTGTCATGTTCCATGGTATCTCCGAAAGACAGGCCTGGAATGCAAGATGTCTGTGCGAAACTTTGTGCAGTCAAAGAAACTTTTCTGCAGTTTGGCGATTTCACTTTGTGA

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Protein seq

MIRMLSMLCSLLIFTFFSTAILAAAQSNKSESDRKTLLCFKSGILLDLDGVLSSWMDESLNFCSWRGVTCSSSYPSRVVHLELNSSHLTGRISGCIGNLTSLSQINLTDNHLSGAIPDELGKLLVLRTLLLAANNLQGDIPDSLGTSLSLSYVNLANNTLTGVIPDSLASSPSLSMLILSRNNLSGQIPAKLFSNSSKLTKIDLQMNSLSGPIPAFENNKLAGLIPMTLSHIPELIELDLSYNSLVGFVPLSLYNMSSLTYFSLGNNRLVGQIPSDIGNSLPKLQILKFQNSKFEGQIPTSLSNATNLIQLDLSNNLMHGSIPSLGLLANLNQVRLGKNSLEADHWAFLASMENCTELIELSLQWNLLDGILPSSVGNISTNLQALVLRGNQISGRIPSTIGKLHNLYILDLSINKLSVPPLTILLCLVSWVLVTLWKRRVFSFSQCSDLFKRCNYVLNWCSGMPSMLCLPQPKRRRVPIPPSNNGTLKKVSYSDIIKATNWFSSNHKISSTQTGSIYVGRFKSEKRLVAIKVFNLNQPGAYESYFIECEVLRSTRHRNIMRPLTLCSTLDHENHEFKALIFKFMVNGSLERWLHSEQHNGIPDRVLCLGQRISIATDVATALDYIHNHVMPPLVHCDLKPSNILLDVDITALLGDFGSAKFLFPDLVSPESLADIGRTIGYIAPEYGMGSQISTGGDVYSFGVLLLEMLTGKQPTDDTFADGVSIHNFVDSMFPDRVAEILDPYMTHEEHQVYTAEWLEACIKPLVALGLSCSMVSPKDRPGMQDVCAKLCAVKETFLQFGDFTL

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Event Type Chromosome Start End Strand Alternative mRNAs Total mRNAs Source

Expression

Leaf Root Panicle
FPKM 0.072246 0.0 0.133967

Homologues

Genome & Annotation Homologs Type Expression(FPKM)
Leaf Root Panicle
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) OsNip_04g0227000 RBH 0.722917 0.598978 0.390265
Nipponbare | IRGSP 1.0 | MSU LOC_Os04g15650 SBH 0.488874 0.402862 0.100462
Nipponbare | IRGSP 1.0 | RAP-db Os04g0227000 RBH None None None
Azucena | AzucenaRS1 | Gramene(+IsoSeq) OsAzu_04g0004980 SBH 0.244290 0.967602 2.680362
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) OsKeNa_04g0005610 SBH 0.153115 0.776981 0.993871
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) OsCMeo_04g0005230 SBH 0.295748 0.296784 3.057565
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) OsARC_04g0005050 SBH 0.056989 0.043205 None
PR 106 | Os127742RS1 | Gramene(+IsoSeq) OsPr106_04g0005030 RBH 0.251778 0.0 1.637198
Minghui 63 | MH63RS3 | HZAU OsMH63_04G0128300 RBH 0.4581565 0.40383 0.015404
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) OsIR64_04g0005040 SBH 0.061083 0.000000 0.038774
Zhenshan 97 | ZS97RS3 | HZAU OsZS97_04G0134800 RBH 0.77421 0.276208 0.0682025
LIMA | Os127564RS1 | Gramene(+IsoSeq) OsLima_04g0004860 RBH 0.032235 0.0 None
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) OsKYG_04g0005230 RBH 0.000000 0.0 None
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) OsGoSa_04g0004980 RBH 0.916629 2.456911 None
LIU XU | Os125827RS1 | Gramene(+IsoSeq) OsLiXu_04g0004810 RBH 0.000000 0.000000 0.000000
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) OsLaMu_04g0005130 RBH 0.089088 0.0 None
N22 | OsN22RS2 | Gramene(+IsoSeq) OsN22_04G005150 RBH 0.042369 0.0 0.0
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) OsNaBo_04g0004970 RBH 0.737848 0.000000 0.378911
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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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