Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os04g15650 | OGI:04027980 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr04:8507962-8511064 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | AGCTCTTGCAGTTCTTTGTTCTTCAGCACCCTGACTGCCTAGAGCCCTAGACACAATGATTCGGATGTTGTCCATGCTGTGTAGTTTACTCATCTTTACCTTCTTCAGCACCGCAATACTTGCAGCAGCACAATCAAACAAGTCCGAGAGTGATCGGAAAGCCCTCCTTTGCTTCAAGTCCGGCATCTTGTTGGACCTGGATGGTGTCCTAAGTTCATGGATGGACGACTCACTCAATTTCTGCAGTTGGAGAGGGGTCACTTGCAGCTCATCATATCCATCCCGTGTGGTACATCTAGAACTCAGTTCTTCACATCTCACTGGGAGGATATCTGGTTGCATAGGCAACCTGACTTCTCTATCTCAGATAAATCTTACGGATAATCATCTGTCTGGGGCCATCCCTGATGAACTGGGCAAACTTCCTGTCCTCCGCACTCTGTTGCTTGCTGCAAACAACCTTGAAGGTGACATCCCTGATTCACTTGGTACTAGTTTGTCTCTCAGCTATGTCAATCTTGCAAACAATACTCTTACTGGTGTTATCCCTGATTCTTTAGCAAGTAGCCCCTCTCTCAACATGCTGATCCTGTCACGTAACAACCTGTCTGGACAAATTCCAGCCAAACTTTTTTCTAACTCATCCAAACTTACAATAGCTTGGTTGGTTTTGTCCCATTATCTCTTTACAACATGTCATCACTCACATACTTTAGCCTGGGTAACAATCGCCTTGTTGGGCAGATACCATCTGACATTGGTAACTCTTTACCAAAGCTCCAGATTCTGAAATTCCAAAACAGCAAGTTTGAGGGTCAAATCCCTACATCATTATCCAATGCAACGAATCTCATACAGCTTGATCTCTCAAACAACTTGATGCATGGCTCTATCCCATCTCTTGGATTGTTGGCCAATTTGAATCAAGTTCGTTTAGGAAAGAATTCTCTAGAAGCAGATCATTGGGCGTTTCTTGCATCTATGGAAAATTGTACGGAGCTGATTGAATTGTCCTTGCAATGGAATCTGCTAGATGGAATTTTACCCAGCTCTGTCAGTAATATTTCTACGAACCTGCAAGCTTTAGTTCTTCGTGGGAACCAAATTTCTGGGAGAATACCTTCGACGATTGGAAAATTGCACAACTTGTATATTCTGGACCTATCCATAAACAAATTATCAGGTCAAATCCCATCCACAATCGGCAACATTTCTCACCTGGGACATTTTTTTCTTGATGATAACAACTTGAGTGGAAATATACCTATTAGTATATGGCAGTGCACCGAACTTCTTGAACTCAATTTTTCTATCAATGATCTTAGTGGACTGATACCTTCTGACTTAAGTAGTTCTCCATTCTACTCTAGAGGCTCTACCCTCTTGGTTGTGGACTTTTCACACAATAATCTTACAGGACAAATTCCTGAAAGTTTTGGGTCAAATAATATGCAACAAGTTAATCTTTCTCGAAATGAATTATCTGGTCCTCTGCCTGAATTCTTTCGGCGCATGACCATGTTGGAGCTACTTGATCTGTCTTACAACAATTTCGAAGGGCCAATTCCAACTGATTGCTTTTTCCAAAACACGAGTGCCGTATTTTTGGAAGGAAATAAGAAGCTCTATTCAAAGTCGTCAACAGTATCATTTCCAATTTGTGGTAGCACATCTGACAGTACAAAAAGCAACAATGAGGCATCATTGACCAAGAAGATCCATTTGCCTTTGCAGGTAATTGTGTTGCTAATTTTAGTACCACCACTTACTATTCTTCTGTTTTTGGTTTCATGGGTTCTTGTCACTCTTTGGAAGAGAAGGGTGTTTTCATTTTCACAGTGTAGTGATCTGTTCAAAAGGTGCAATTATGTGCTCAACTGGTGCAGTGGCATGCCCAGTATGCTTGGTTTGCCCCAGCCAAAGAGAAGAAGAGTGCCTATACCTCCAAGCAACAATGGGACACTCAAGAAGGTCTCATACAGTGACATCATTAAAGCTACCAATTGGTTTTCTTCAAACCATAAAATTAGTTCAACCCAAACTGGATCAATTTATGTTGGTAGGTTTAAGTCTGAGAAACGCCTAGTTGCCATTAAAGTATTCAACTTGAATCAACCTGGTGCATATGAGAGTTATTTTATTGAGTGTGAGGTGCTACGAAGCACTCGCCATAGAAACATAATGCGGCCACTGACCCTATGCTCAACATTGGACCACGAAAACCATGAGTTCAAGGCACTAATCTTCAAGTTCATGGTTAATGGTAGCCTTGAAAGATGGTTGCACTCTGAGCAGCACAATGGAATCCCAGATAGAGTACTATGCTTAGGCCAGAGGATATCCATTGCAACTGATGTGGCCACTGCTCTTGATTACATCCACAACCATGTAATGCCTCCTTTGGTCCATTGTGATTTGAAGCCGAGCAATATCCTCTTGGATGTTGACATAACCGCGCTTCTTGGTGACTTTGGATCAGCAAAGTTTCTATTTCCTGATCTGGTCAGTCCAGAAAGCTTGGCTGATATAGGAGGAACAATTGGATACATTGCACCAGGTGTGTTCCTATTTTTATCTCTCTTCTTAACTATGTTTTTTTGTTGATATAACTGCAGTAATTCAACGTAGCAATTAATTTGTACAGAGTATGGAATGGGCAGTCAAATCTCAACGGGAGGCGATGTGTATAGTTTTGGAGTGCTACTTCTGGAAATGCTTACAGGAAAGCAGCCAACTGATGATACATTTGCGGATGGAGTTAGCATTCACAACTTTGTTGACTCCATGTTCCCAGATAGAGTTGCAGAGATTCTAGATCCCTATATGACGCACGAGGAGCACCAAGTGTATACAGCAGAATGGTTGGAGGCCTGTATTAAGCCGTTAGTTGCACTTGGCCTGTCATGTTCCATGGTATCTTCGAAAGACAGACCTGGAATGCAAGATGTCTGTGCGAAACTTTGTGCAGTCAAAGAAACTTTTCTGCAGTTTGGCGATTTCAGTTTGTGATAGAAGTTCTGTAATTGCAGGCATACATGAAACTTTTAACCAGGCAGCATGTGAGCTTATTCGTTTAAATTCATATATATAATTTTCAGGGAGG
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| CDS seq | ATGTCATCACTCACATACTTTAGCCTGGGTAACAATCGCCTTGTTGGGCAGATACCATCTGACATTGGTAACTCTTTACCAAAGCTCCAGATTCTGAAATTCCAAAACAGCAAGTTTGAGGGTCAAATCCCTACATCATTATCCAATGCAACGAATCTCATACAGCTTGATCTCTCAAACAACTTGATGCATGGCTCTATCCCATCTCTTGGATTGTTGGCCAATTTGAATCAAGTTCGTTTAGGAAAGAATTCTCTAGAAGCAGATCATTGGGCGTTTCTTGCATCTATGGAAAATTGTACGGAGCTGATTGAATTGTCCTTGCAATGGAATCTGCTAGATGGAATTTTACCCAGCTCTGTCAGTAATATTTCTACGAACCTGCAAGCTTTAGTTCTTCGTGGGAACCAAATTTCTGGGAGAATACCTTCGACGATTGGAAAATTGCACAACTTGTATATTCTGGACCTATCCATAAACAAATTATCAGGTCAAATCCCATCCACAATCGGCAACATTTCTCACCTGGGACATTTTTTTCTTGATGATAACAACTTGAGTGGAAATATACCTATTAGTATATGGCAGTGCACCGAACTTCTTGAACTCAATTTTTCTATCAATGATCTTAGTGGACTGATACCTTCTGACTTAAGTAGTTCTCCATTCTACTCTAGAGGCTCTACCCTCTTGGTTGTGGACTTTTCACACAATAATCTTACAGGACAAATTCCTGAAAGTTTTGGGTCAAATAATATGCAACAAGTTAATCTTTCTCGAAATGAATTATCTGGTCCTCTGCCTGAATTCTTTCGGCGCATGACCATGTTGGAGCTACTTGATCTGTCTTACAACAATTTCGAAGGGCCAATTCCAACTGATTGCTTTTTCCAAAACACGAGTGCCGTATTTTTGGAAGGAAATAAGAAGCTCTATTCAAAGTCGTCAACAGTATCATTTCCAATTTGTGGTAGCACATCTGACAGTACAAAAAGCAACAATGAGGCATCATTGACCAAGAAGATCCATTTGCCTTTGCAGGTAATTGTGTTGCTAATTTTAGTACCACCACTTACTATTCTTCTGTTTTTGGTTTCATGGGTTCTTGTCACTCTTTGGAAGAGAAGGGTGTTTTCATTTTCACAGTGTAGTGATCTGTTCAAAAGGTGCAATTATGTGCTCAACTGGTGCAGTGGCATGCCCAGTATGCTTGGTTTGCCCCAGCCAAAGAGAAGAAGAGTGCCTATACCTCCAAGCAACAATGGGACACTCAAGAAGGTCTCATACAGTGACATCATTAAAGCTACCAATTGGTTTTCTTCAAACCATAAAATTAGTTCAACCCAAACTGGATCAATTTATGTTGGTAGGTTTAAGTCTGAGAAACGCCTAGTTGCCATTAAAGTATTCAACTTGAATCAACCTGGTGCATATGAGAGTTATTTTATTGAGTGTGAGGTGCTACGAAGCACTCGCCATAGAAACATAATGCGGCCACTGACCCTATGCTCAACATTGGACCACGAAAACCATGAGTTCAAGGCACTAATCTTCAAGTTCATGGTTAATGGTAGCCTTGAAAGATGGTTGCACTCTGAGCAGCACAATGGAATCCCAGATAGAGTACTATGCTTAGGCCAGAGGATATCCATTGCAACTGATGTGGCCACTGCTCTTGATTACATCCACAACCATGTAATGCCTCCTTTGGTCCATTGTGATTTGAAGCCGAGCAATATCCTCTTGGATGTTGACATAACCGCGCTTCTTGGTGACTTTGGATCAGCAAAGTTTCTATTTCCTGATCTGGTCAGTCCAGAAAGCTTGGCTGATATAGGAGGAACAATTGGATACATTGCACCAGAGTATGGAATGGGCAGTCAAATCTCAACGGGAGGCGATGTGTATAGTTTTGGAGTGCTACTTCTGGAAATGCTTACAGGAAAGCAGCCAACTGATGATACATTTGCGGATGGAGTTAGCATTCACAACTTTGTTGACTCCATGTTCCCAGATAGAGTTGCAGAGATTCTAGATCCCTATATGACGCACGAGGAGCACCAAGTGTATACAGCAGAATGGTTGGAGGCCTGTATTAAGCCGTTAGTTGCACTTGGCCTGTCATGTTCCATGGTATCTTCGAAAGACAGACCTGGAATGCAAGATGTCTGTGCGAAACTTTGTGCAGTCAAAGAAACTTTTCTGCAGTTTGGCGATTTCAGTTTGTGA
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| Protein seq | MSSLTYFSLGNNRLVGQIPSDIGNSLPKLQILKFQNSKFEGQIPTSLSNATNLIQLDLSNNLMHGSIPSLGLLANLNQVRLGKNSLEADHWAFLASMENCTELIELSLQWNLLDGILPSSVSNISTNLQALVLRGNQISGRIPSTIGKLHNLYILDLSINKLSGQIPSTIGNISHLGHFFLDDNNLSGNIPISIWQCTELLELNFSINDLSGLIPSDLSSSPFYSRGSTLLVVDFSHNNLTGQIPESFGSNNMQQVNLSRNELSGPLPEFFRRMTMLELLDLSYNNFEGPIPTDCFFQNTSAVFLEGNKKLYSKSSTVSFPICGSTSDSTKSNNEASLTKKIHLPLQVIVLLILVPPLTILLFLVSWVLVTLWKRRVFSFSQCSDLFKRCNYVLNWCSGMPSMLGLPQPKRRRVPIPPSNNGTLKKVSYSDIIKATNWFSSNHKISSTQTGSIYVGRFKSEKRLVAIKVFNLNQPGAYESYFIECEVLRSTRHRNIMRPLTLCSTLDHENHEFKALIFKFMVNGSLERWLHSEQHNGIPDRVLCLGQRISIATDVATALDYIHNHVMPPLVHCDLKPSNILLDVDITALLGDFGSAKFLFPDLVSPESLADIGGTIGYIAPEYGMGSQISTGGDVYSFGVLLLEMLTGKQPTDDTFADGVSIHNFVDSMFPDRVAEILDPYMTHEEHQVYTAEWLEACIKPLVALGLSCSMVSSKDRPGMQDVCAKLCAVKETFLQFGDFSL |
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| Function | Probable LRR receptor-like serine/threonine-protein kinase At3g47570 [UniProtKB/Swiss-Prot:C0LGP4] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os04g15650 | LOC_Os04g15650.1 | Chr04 | 8507962 | 8511064 | + | MSU_osa1r7 | ||
| CDS seq | ATGTCATCACTCACATACTTTAGCCTGGGTAACAATCGCCTTGTTGGGCAGATACCATCTGACATTGGTAACTCTTTACCAAAGCTCCAGATTCTGAAATTCCAAAACAGCAAGTTTGAGGGTCAAATCCCTACATCATTATCCAATGCAACGAATCTCATACAGCTTGATCTCTCAAACAACTTGATGCATGGCTCTATCCCATCTCTTGGATTGTTGGCCAATTTGAATCAAGTTCGTTTAGGAAAGAATTCTCTAGAAGCAGATCATTGGGCGTTTCTTGCATCTATGGAAAATTGTACGGAGCTGATTGAATTGTCCTTGCAATGGAATCTGCTAGATGGAATTTTACCCAGCTCTGTCAGTAATATTTCTACGAACCTGCAAGCTTTAGTTCTTCGTGGGAACCAAATTTCTGGGAGAATACCTTCGACGATTGGAAAATTGCACAACTTGTATATTCTGGACCTATCCATAAACAAATTATCAGGTCAAATCCCATCCACAATCGGCAACATTTCTCACCTGGGACATTTTTTTCTTGATGATAACAACTTGAGTGGAAATATACCTATTAGTATATGGCAGTGCACCGAACTTCTTGAACTCAATTTTTCTATCAATGATCTTAGTGGACTGATACCTTCTGACTTAAGTAGTTCTCCATTCTACTCTAGAGGCTCTACCCTCTTGGTTGTGGACTTTTCACACAATAATCTTACAGGACAAATTCCTGAAAGTTTTGGGTCAAATAATATGCAACAAGTTAATCTTTCTCGAAATGAATTATCTGGTCCTCTGCCTGAATTCTTTCGGCGCATGACCATGTTGGAGCTACTTGATCTGTCTTACAACAATTTCGAAGGGCCAATTCCAACTGATTGCTTTTTCCAAAACACGAGTGCCGTATTTTTGGAAGGAAATAAGAAGCTCTATTCAAAGTCGTCAACAGTATCATTTCCAATTTGTGGTAGCACATCTGACAGTACAAAAAGCAACAATGAGGCATCATTGACCAAGAAGATCCATTTGCCTTTGCAGGTAATTGTGTTGCTAATTTTAGTACCACCACTTACTATTCTTCTGTTTTTGGTTTCATGGGTTCTTGTCACTCTTTGGAAGAGAAGGGTGTTTTCATTTTCACAGTGTAGTGATCTGTTCAAAAGGTGCAATTATGTGCTCAACTGGTGCAGTGGCATGCCCAGTATGCTTGGTTTGCCCCAGCCAAAGAGAAGAAGAGTGCCTATACCTCCAAGCAACAATGGGACACTCAAGAAGGTCTCATACAGTGACATCATTAAAGCTACCAATTGGTTTTCTTCAAACCATAAAATTAGTTCAACCCAAACTGGATCAATTTATGTTGGTAGGTTTAAGTCTGAGAAACGCCTAGTTGCCATTAAAGTATTCAACTTGAATCAACCTGGTGCATATGAGAGTTATTTTATTGAGTGTGAGGTGCTACGAAGCACTCGCCATAGAAACATAATGCGGCCACTGACCCTATGCTCAACATTGGACCACGAAAACCATGAGTTCAAGGCACTAATCTTCAAGTTCATGGTTAATGGTAGCCTTGAAAGATGGTTGCACTCTGAGCAGCACAATGGAATCCCAGATAGAGTACTATGCTTAGGCCAGAGGATATCCATTGCAACTGATGTGGCCACTGCTCTTGATTACATCCACAACCATGTAATGCCTCCTTTGGTCCATTGTGATTTGAAGCCGAGCAATATCCTCTTGGATGTTGACATAACCGCGCTTCTTGGTGACTTTGGATCAGCAAAGTTTCTATTTCCTGATCTGGTCAGTCCAGAAAGCTTGGCTGATATAGGAGGAACAATTGGATACATTGCACCAGAGTATGGAATGGGCAGTCAAATCTCAACGGGAGGCGATGTGTATAGTTTTGGAGTGCTACTTCTGGAAATGCTTACAGGAAAGCAGCCAACTGATGATACATTTGCGGATGGAGTTAGCATTCACAACTTTGTTGACTCCATGTTCCCAGATAGAGTTGCAGAGATTCTAGATCCCTATATGACGCACGAGGAGCACCAAGTGTATACAGCAGAATGGTTGGAGGCCTGTATTAAGCCGTTAGTTGCACTTGGCCTGTCATGTTCCATGGTATCTTCGAAAGACAGACCTGGAATGCAAGATGTCTGTGCGAAACTTTGTGCAGTCAAAGAAACTTTTCTGCAGTTTGGCGATTTCAGTTTGTGA
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| Protein seq | MSSLTYFSLGNNRLVGQIPSDIGNSLPKLQILKFQNSKFEGQIPTSLSNATNLIQLDLSNNLMHGSIPSLGLLANLNQVRLGKNSLEADHWAFLASMENCTELIELSLQWNLLDGILPSSVSNISTNLQALVLRGNQISGRIPSTIGKLHNLYILDLSINKLSGQIPSTIGNISHLGHFFLDDNNLSGNIPISIWQCTELLELNFSINDLSGLIPSDLSSSPFYSRGSTLLVVDFSHNNLTGQIPESFGSNNMQQVNLSRNELSGPLPEFFRRMTMLELLDLSYNNFEGPIPTDCFFQNTSAVFLEGNKKLYSKSSTVSFPICGSTSDSTKSNNEASLTKKIHLPLQVIVLLILVPPLTILLFLVSWVLVTLWKRRVFSFSQCSDLFKRCNYVLNWCSGMPSMLGLPQPKRRRVPIPPSNNGTLKKVSYSDIIKATNWFSSNHKISSTQTGSIYVGRFKSEKRLVAIKVFNLNQPGAYESYFIECEVLRSTRHRNIMRPLTLCSTLDHENHEFKALIFKFMVNGSLERWLHSEQHNGIPDRVLCLGQRISIATDVATALDYIHNHVMPPLVHCDLKPSNILLDVDITALLGDFGSAKFLFPDLVSPESLADIGGTIGYIAPEYGMGSQISTGGDVYSFGVLLLEMLTGKQPTDDTFADGVSIHNFVDSMFPDRVAEILDPYMTHEEHQVYTAEWLEACIKPLVALGLSCSMVSSKDRPGMQDVCAKLCAVKETFLQFGDFSL
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.488874 | 0.402862 | 0.100462 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0226800 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g23890 | SBH | 13.558038 | 13.749624 | 1.823807 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0226800 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0004980 | RBH | 0.244290 | 0.967602 | 2.680362 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0005610 | SBH | 0.153115 | 0.776981 | 0.993871 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0005230 | SBH | 0.295748 | 0.296784 | 3.057565 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0005050 | SBH | 0.056989 | 0.043205 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0005010 | SBH | 2.133982 | 0.0 | 0.572953 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0128300 | RBH | 0.4581565 | 0.40383 | 0.015404 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0005040 | SBH | 0.061083 | 0.000000 | 0.038774 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0134800 | RBH | 0.77421 | 0.276208 | 0.0682025 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0004840 | SBH | 0.0 | 0.026355 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0005210 | SBH | 0.230304 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0004960 | SBH | 15.101873 | 29.857210 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0004790 | SBH | 0.000000 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0005110 | SBH | 0.111805 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G005130 | SBH | 0.0 | 0.277339 | 0.331939 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0004950 | SBH | 0.0 | 0.000000 | 0.244750 |
