Basic Info

Gene ID OGI # | Score   Accession | Assembly | Annotation Location Links
OsNip_04g0226800 OGI:04027980 | 16/16 Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) Chr04:8497213-8499957
Gene Symbol -
DNA seq

ATGAATTCTTTTTCTGGCATAATTCCCCCTCCCCATAAGATGGCCACTCTTCGATTTCTTGGTCTTACTGGAAACTTGCTTTCTGGAAGAATACCAGTATCCCTAGCAAATATTTCATCTCTAAGTTCCATACTGCTAGGACAAAACAATTTATCAGGACCAATTCCAGAATCCTTGAGTCAAATCGCAAACCTGAATAAGCTAGATCTGAGTGGAAACAGATTATCAGGGTTTGTCCCAGTCACACTGTACAATAAGTCGTCGCTTGAATTTTTTGGTATAGGAAACAACAGTCTTATTGGAAAGATACCTCCTGACATTGGTCACACACTTCCAAATCTCAAATCGTTGGTCATGTCTCTGAATAGGTTTGATGGATCAATTCCAACTTCCCTGGCCAATGCATCAAACCTACAAATGCTTGATCTCTCTAGCAATTTGCTAAGTGGGCTTGTACCAGCATTAGGATCCTTGATAAACTTGAATAAACTTTTCCTAGGAAATAACAGGCTAGAAGCTGAAGACTGGTCATTCTTTACTGCTCTGACAAATTGTACACAACTGTTACAATTGTCGATGGAAGGGAATAACCTGAATGGTAGCCTGCCGAAATCAGTTGGCAACCTTTCAACGAATTTTGAGTGGTTTAAATTTGGGGGCAACCAAATTTCCGGAAGAATTCCAGATGAGTTAGGGAACCTCGTTAATCTAACTTTACTCGACATTAACTCGAACATGCTGTCAGGAGAAATTCCCTTGACTATTGGGAACTTGAGGAAATTGTTTATACTGAATCTATCCATGAATAAATTGTCTGGACAAATCCCATCTACAATTGGTAATCTTTCTCAACTTGGCAAGCTTTATCTCGATAATAATAATTTATCTGGTAAAATACCAGCAAGAATAGGGCAGTGCAAAATGCTAAATATGCTAAACTTATCAGTGAACAGCCTAGATGGATCCATACCAGATGAACTTGTCAGTATGTCTTCTCTTTCCTTGGGTTTGGATCTGTCCAACAACAAACTTTCAGGCTCAATACCACAAGAAGTTGGTACTCTGAGCAATCTTGCCCTCCTAAATTTTTCCAACAACCAGTTGTCAGGCCAAATTCCTTCTTCACTCGGCCAGTGTGTTGTTCTTTTGTCCCTAAACATGGAAGGCAACAATCTCATTGGGAATATACCACCGGCATTAACTTCACTGCATGCCATTCAACGAATTGATCTCTCTGAGAACAACTTATCCAGTGAAGTTCCTGTGTTCTTCGAGAACTTTATCAGCCTAGCCCACCTAAATTTATCATACAACTATTTTGAAGGGCCAATTCCCATCAGTGGTATCTTTCAAAGACCAAATTCTGTAAGCCTGGAAGGAAATAAAGGGTTATGTGCGAATATTCACATATTGAACTTGCCGATATGCCCCAGCTCACCAGCTAAAACGAAGAACAATAAACGACTGCTACTGAAAGTTATTCCCTCCATTACTATTGCTTTATTCTCAGCTCTATGCTTAATTTTCGCTCTTGTCACTCTATGGAAGAGAAGGATGATTTCGTTCTCATGGTTCAATTATGGGCATAGACAGTGCACTGATGTGCTCAGACAATTCAGTGGCATGCTCAACATGCTTTGTTCGTCCAATCCAAAGAGAAGGGAAGTGCCAACAACTCCAATCAACAATGAGACGCTGAAGAAGGTCTCATATGGTGACATTCTTAAAGCTACTAATTGGTTTTCTTCAGTCCATACAATAAGTTCAACCCATACTGGATCAGTTTATGTTGGTAGGTTTAAGTCTGACAAAAGCCTAGTTGCTATCAAAGTATTCAACTTGAATCAGCCTGGTGCATATGAGAGTTACTTTATTGAGTGTGAAGTGCTAAGAAGCACCCGCCATAGGAATCTAATGAGACCTTTGACCCTATGTTCAACATTGGACAAAGAAAACCATGAATTCAAAGCGCTAATCTTCAAGTTCATGGTTAATGGTAGCCTTGAAAGATGGTTGTACTCTGAGCAGCATTATGGAATCAAAGATAGAGTGCTATGCTTAGGTCAGAGAATATGCATAGCAACTGAGGTGGCTTCTGCTCTGGATTATATCCACAACCATCTAACACCCCCTTTGGTCCATTGTGATGTGAAGCCGAGCAATATCCTCTTAGACGATGACATGACCGCGCGTCTAGGTGATTTTGGGTCAGCAAAGTTTCTATTTCCAGATCTGGTCAGTCTGGAAAGCTTAGCTGATATAGGAGGAACTATTGGGTACATTGCACCAGGTGTGTTCCTTTTCTCTCTCTTCTTAACTAGTATGTTTTTTTTTTGTTGATATAACTGTAGTAATTCAATGTAGTTATTCACTTTTACAGAGTATGGAATGGGCTGTCAAATCTCAACAGGAGGCGATGTGTATAGTTTTGGAGTGCTGCTTCTGGAGATGCTTACAGGAAAGCAGCCAACTGATGATACATTTGCGGATGGAGTTAGCATTCATAACTTTATTGACTCCATGTTCCCAGATAGAGTTGCAGAGATTCTAGATCCCTATATGATGCACGAGGAGCACCAAGTGTATCCAGCAGAATGGTTTGAGGCCTGTATTAAGCCGTTAGTTGCACTTGGCCTGTCATGTTCCATGGTATCTCCGAAAGACAGACCTGGAATGCAAGATGTCTGTGCAAAACTTTGTGCTGTCAAAGAAACTTTTCTGCAGTTCGGTGATTTCAGTTTATGA

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CDS seq

ATGAATTCTTTTTCTGGCATAATTCCCCCTCCCCATAAGATGGCCACTCTTCGATTTCTTGGTCTTACTGGAAACTTGCTTTCTGGAAGAATACCAGTATCCCTAGCAAATATTTCATCTCTAAGTTCCATACTGCTAGGACAAAACAATTTATCAGGACCAATTCCAGAATCCTTGAGTCAAATCGCAAACCTGAATAAGCTAGATCTGAGTGGAAACAGATTATCAGGGTTTGTCCCAGTCACACTGTACAATAAGTCGTCGCTTGAATTTTTTGGTATAGGAAACAACAGTCTTATTGGAAAGATACCTCCTGACATTGGTCACACACTTCCAAATCTCAAATCGTTGGTCATGTCTCTGAATAGGTTTGATGGATCAATTCCAACTTCCCTGGCCAATGCATCAAACCTACAAATGCTTGATCTCTCTAGCAATTTGCTAAGTGGGCTTGTACCAGCATTAGGATCCTTGATAAACTTGAATAAACTTTTCCTAGGAAATAACAGGCTAGAAGCTGAAGACTGGTCATTCTTTACTGCTCTGACAAATTGTACACAACTGTTACAATTGTCGATGGAAGGGAATAACCTGAATGGTAGCCTGCCGAAATCAGTTGGCAACCTTTCAACGAATTTTGAGTGGTTTAAATTTGGGGGCAACCAAATTTCCGGAAGAATTCCAGATGAGTTAGGGAACCTCGTTAATCTAACTTTACTCGACATTAACTCGAACATGCTGTCAGGAGAAATTCCCTTGACTATTGGGAACTTGAGGAAATTGTTTATACTGAATCTATCCATGAATAAATTGTCTGGACAAATCCCATCTACAATTGGTAATCTTTCTCAACTTGGCAAGCTTTATCTCGATAATAATAATTTATCTGGTAAAATACCAGCAAGAATAGGGCAGTGCAAAATGCTAAATATGCTAAACTTATCAGTGAACAGCCTAGATGGATCCATACCAGATGAACTTGTCAGTATGTCTTCTCTTTCCTTGGGTTTGGATCTGTCCAACAACAAACTTTCAGGCTCAATACCACAAGAAGTTGGTACTCTGAGCAATCTTGCCCTCCTAAATTTTTCCAACAACCAGTTGTCAGGCCAAATTCCTTCTTCACTCGGCCAGTGTGTTGTTCTTTTGTCCCTAAACATGGAAGGCAACAATCTCATTGGGAATATACCACCGGCATTAACTTCACTGCATGCCATTCAACGAATTGATCTCTCTGAGAACAACTTATCCAGTGAAGTTCCTGTGTTCTTCGAGAACTTTATCAGCCTAGCCCACCTAAATTTATCATACAACTATTTTGAAGGGCCAATTCCCATCAGTGGTATCTTTCAAAGACCAAATTCTGTAAGCCTGGAAGGAAATAAAGGGTTATGTGCGAATATTCACATATTGAACTTGCCGATATGCCCCAGCTCACCAGCTAAAACGAAGAACAATAAACGACTGCTACTGAAAGTTATTCCCTCCATTACTATTGCTTTATTCTCAGCTCTATGCTTAATTTTCGCTCTTGTCACTCTATGGAAGAGAAGGATGATTTCGTTCTCATGGTTCAATTATGGGCATAGACAGTGCACTGATGTGCTCAGACAATTCAGTGGCATGCTCAACATGCTTTGTTCGTCCAATCCAAAGAGAAGGGAAGTGCCAACAACTCCAATCAACAATGAGACGCTGAAGAAGGTCTCATATGGTGACATTCTTAAAGCTACTAATTGGTTTTCTTCAGTCCATACAATAAGTTCAACCCATACTGGATCAGTTTATGTTGGTAGGTTTAAGTCTGACAAAAGCCTAGTTGCTATCAAAGTATTCAACTTGAATCAGCCTGGTGCATATGAGAGTTACTTTATTGAGTGTGAAGTGCTAAGAAGCACCCGCCATAGGAATCTAATGAGACCTTTGACCCTATGTTCAACATTGGACAAAGAAAACCATGAATTCAAAGCGCTAATCTTCAAGTTCATGGTTAATGGTAGCCTTGAAAGATGGTTGTACTCTGAGCAGCATTATGGAATCAAAGATAGAGTGCTATGCTTAGGTCAGAGAATATGCATAGCAACTGAGGTGGCTTCTGCTCTGGATTATATCCACAACCATCTAACACCCCCTTTGGTCCATTGTGATGTGAAGCCGAGCAATATCCTCTTAGACGATGACATGACCGCGCGTCTAGGTGATTTTGGGTCAGCAAAGTTTCTATTTCCAGATCTGGTCAGTCTGGAAAGCTTAGCTGATATAGGAGGAACTATTGGGTACATTGCACCAGAGTATGGAATGGGCTGTCAAATCTCAACAGGAGGCGATGTGTATAGTTTTGGAGTGCTGCTTCTGGAGATGCTTACAGGAAAGCAGCCAACTGATGATACATTTGCGGATGGAGTTAGCATTCATAACTTTATTGACTCCATGTTCCCAGATAGAGTTGCAGAGATTCTAGATCCCTATATGATGCACGAGGAGCACCAAGTGTATCCAGCAGAATGGTTTGAGGCCTGTATTAAGCCGTTAGTTGCACTTGGCCTGTCATGTTCCATGGTATCTCCGAAAGACAGACCTGGAATGCAAGATGTCTGTGCAAAACTTTGTGCTGTCAAAGAAACTTTTCTGCAGTTCGGTGATTTCAGTTTATGA

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Protein seq

MNSFSGIIPPPHKMATLRFLGLTGNLLSGRIPVSLANISSLSSILLGQNNLSGPIPESLSQIANLNKLDLSGNRLSGFVPVTLYNKSSLEFFGIGNNSLIGKIPPDIGHTLPNLKSLVMSLNRFDGSIPTSLANASNLQMLDLSSNLLSGLVPALGSLINLNKLFLGNNRLEAEDWSFFTALTNCTQLLQLSMEGNNLNGSLPKSVGNLSTNFEWFKFGGNQISGRIPDELGNLVNLTLLDINSNMLSGEIPLTIGNLRKLFILNLSMNKLSGQIPSTIGNLSQLGKLYLDNNNLSGKIPARIGQCKMLNMLNLSVNSLDGSIPDELVSMSSLSLGLDLSNNKLSGSIPQEVGTLSNLALLNFSNNQLSGQIPSSLGQCVVLLSLNMEGNNLIGNIPPALTSLHAIQRIDLSENNLSSEVPVFFENFISLAHLNLSYNYFEGPIPISGIFQRPNSVSLEGNKGLCANIHILNLPICPSSPAKTKNNKRLLLKVIPSITIALFSALCLIFALVTLWKRRMISFSWFNYGHRQCTDVLRQFSGMLNMLCSSNPKRREVPTTPINNETLKKVSYGDILKATNWFSSVHTISSTHTGSVYVGRFKSDKSLVAIKVFNLNQPGAYESYFIECEVLRSTRHRNLMRPLTLCSTLDKENHEFKALIFKFMVNGSLERWLYSEQHYGIKDRVLCLGQRICIATEVASALDYIHNHLTPPLVHCDVKPSNILLDDDMTARLGDFGSAKFLFPDLVSLESLADIGGTIGYIAPEYGMGCQISTGGDVYSFGVLLLEMLTGKQPTDDTFADGVSIHNFIDSMFPDRVAEILDPYMMHEEHQVYPAEWFEACIKPLVALGLSCSMVSPKDRPGMQDVCAKLCAVKETFLQFGDFSL

Function Probable LRR receptor-like serine/threonine-protein kinase At3g47570 [UniProtKB/Swiss-Prot:C0LGP4]

Transcripts

Gene Transcript Chromosome Start End Strand Source
OsNip_04g0226800 OsNip_04t0226800-00 Chr04 8497213 8499957 + RAP2018-11-26
CDS seq

ATGAATTCTTTTTCTGGCATAATTCCCCCTCCCCATAAGATGGCCACTCTTCGATTTCTTGGTCTTACTGGAAACTTGCTTTCTGGAAGAATACCAGTATCCCTAGCAAATATTTCATCTCTAAGTTCCATACTGCTAGGACAAAACAATTTATCAGGACCAATTCCAGAATCCTTGAGTCAAATCGCAAACCTGAATAAGCTAGATCTGAGTGGAAACAGATTATCAGGGTTTGTCCCAGTCACACTGTACAATAAGTCGTCGCTTGAATTTTTTGGTATAGGAAACAACAGTCTTATTGGAAAGATACCTCCTGACATTGGTCACACACTTCCAAATCTCAAATCGTTGGTCATGTCTCTGAATAGGTTTGATGGATCAATTCCAACTTCCCTGGCCAATGCATCAAACCTACAAATGCTTGATCTCTCTAGCAATTTGCTAAGTGGGCTTGTACCAGCATTAGGATCCTTGATAAACTTGAATAAACTTTTCCTAGGAAATAACAGGCTAGAAGCTGAAGACTGGTCATTCTTTACTGCTCTGACAAATTGTACACAACTGTTACAATTGTCGATGGAAGGGAATAACCTGAATGGTAGCCTGCCGAAATCAGTTGGCAACCTTTCAACGAATTTTGAGTGGTTTAAATTTGGGGGCAACCAAATTTCCGGAAGAATTCCAGATGAGTTAGGGAACCTCGTTAATCTAACTTTACTCGACATTAACTCGAACATGCTGTCAGGAGAAATTCCCTTGACTATTGGGAACTTGAGGAAATTGTTTATACTGAATCTATCCATGAATAAATTGTCTGGACAAATCCCATCTACAATTGGTAATCTTTCTCAACTTGGCAAGCTTTATCTCGATAATAATAATTTATCTGGTAAAATACCAGCAAGAATAGGGCAGTGCAAAATGCTAAATATGCTAAACTTATCAGTGAACAGCCTAGATGGATCCATACCAGATGAACTTGTCAGTATGTCTTCTCTTTCCTTGGGTTTGGATCTGTCCAACAACAAACTTTCAGGCTCAATACCACAAGAAGTTGGTACTCTGAGCAATCTTGCCCTCCTAAATTTTTCCAACAACCAGTTGTCAGGCCAAATTCCTTCTTCACTCGGCCAGTGTGTTGTTCTTTTGTCCCTAAACATGGAAGGCAACAATCTCATTGGGAATATACCACCGGCATTAACTTCACTGCATGCCATTCAACGAATTGATCTCTCTGAGAACAACTTATCCAGTGAAGTTCCTGTGTTCTTCGAGAACTTTATCAGCCTAGCCCACCTAAATTTATCATACAACTATTTTGAAGGGCCAATTCCCATCAGTGGTATCTTTCAAAGACCAAATTCTGTAAGCCTGGAAGGAAATAAAGGGTTATGTGCGAATATTCACATATTGAACTTGCCGATATGCCCCAGCTCACCAGCTAAAACGAAGAACAATAAACGACTGCTACTGAAAGTTATTCCCTCCATTACTATTGCTTTATTCTCAGCTCTATGCTTAATTTTCGCTCTTGTCACTCTATGGAAGAGAAGGATGATTTCGTTCTCATGGTTCAATTATGGGCATAGACAGTGCACTGATGTGCTCAGACAATTCAGTGGCATGCTCAACATGCTTTGTTCGTCCAATCCAAAGAGAAGGGAAGTGCCAACAACTCCAATCAACAATGAGACGCTGAAGAAGGTCTCATATGGTGACATTCTTAAAGCTACTAATTGGTTTTCTTCAGTCCATACAATAAGTTCAACCCATACTGGATCAGTTTATGTTGGTAGGTTTAAGTCTGACAAAAGCCTAGTTGCTATCAAAGTATTCAACTTGAATCAGCCTGGTGCATATGAGAGTTACTTTATTGAGTGTGAAGTGCTAAGAAGCACCCGCCATAGGAATCTAATGAGACCTTTGACCCTATGTTCAACATTGGACAAAGAAAACCATGAATTCAAAGCGCTAATCTTCAAGTTCATGGTTAATGGTAGCCTTGAAAGATGGTTGTACTCTGAGCAGCATTATGGAATCAAAGATAGAGTGCTATGCTTAGGTCAGAGAATATGCATAGCAACTGAGGTGGCTTCTGCTCTGGATTATATCCACAACCATCTAACACCCCCTTTGGTCCATTGTGATGTGAAGCCGAGCAATATCCTCTTAGACGATGACATGACCGCGCGTCTAGGTGATTTTGGGTCAGCAAAGTTTCTATTTCCAGATCTGGTCAGTCTGGAAAGCTTAGCTGATATAGGAGGAACTATTGGGTACATTGCACCAGAGTATGGAATGGGCTGTCAAATCTCAACAGGAGGCGATGTGTATAGTTTTGGAGTGCTGCTTCTGGAGATGCTTACAGGAAAGCAGCCAACTGATGATACATTTGCGGATGGAGTTAGCATTCATAACTTTATTGACTCCATGTTCCCAGATAGAGTTGCAGAGATTCTAGATCCCTATATGATGCACGAGGAGCACCAAGTGTATCCAGCAGAATGGTTTGAGGCCTGTATTAAGCCGTTAGTTGCACTTGGCCTGTCATGTTCCATGGTATCTCCGAAAGACAGACCTGGAATGCAAGATGTCTGTGCAAAACTTTGTGCTGTCAAAGAAACTTTTCTGCAGTTCGGTGATTTCAGTTTATGA

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Protein seq

MNSFSGIIPPPHKMATLRFLGLTGNLLSGRIPVSLANISSLSSILLGQNNLSGPIPESLSQIANLNKLDLSGNRLSGFVPVTLYNKSSLEFFGIGNNSLIGKIPPDIGHTLPNLKSLVMSLNRFDGSIPTSLANASNLQMLDLSSNLLSGLVPALGSLINLNKLFLGNNRLEAEDWSFFTALTNCTQLLQLSMEGNNLNGSLPKSVGNLSTNFEWFKFGGNQISGRIPDELGNLVNLTLLDINSNMLSGEIPLTIGNLRKLFILNLSMNKLSGQIPSTIGNLSQLGKLYLDNNNLSGKIPARIGQCKMLNMLNLSVNSLDGSIPDELVSMSSLSLGLDLSNNKLSGSIPQEVGTLSNLALLNFSNNQLSGQIPSSLGQCVVLLSLNMEGNNLIGNIPPALTSLHAIQRIDLSENNLSSEVPVFFENFISLAHLNLSYNYFEGPIPISGIFQRPNSVSLEGNKGLCANIHILNLPICPSSPAKTKNNKRLLLKVIPSITIALFSALCLIFALVTLWKRRMISFSWFNYGHRQCTDVLRQFSGMLNMLCSSNPKRREVPTTPINNETLKKVSYGDILKATNWFSSVHTISSTHTGSVYVGRFKSDKSLVAIKVFNLNQPGAYESYFIECEVLRSTRHRNLMRPLTLCSTLDKENHEFKALIFKFMVNGSLERWLYSEQHYGIKDRVLCLGQRICIATEVASALDYIHNHLTPPLVHCDVKPSNILLDDDMTARLGDFGSAKFLFPDLVSLESLADIGGTIGYIAPEYGMGCQISTGGDVYSFGVLLLEMLTGKQPTDDTFADGVSIHNFIDSMFPDRVAEILDPYMMHEEHQVYPAEWFEACIKPLVALGLSCSMVSPKDRPGMQDVCAKLCAVKETFLQFGDFSL

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Event Type Chromosome Start End Strand Alternative mRNAs Total mRNAs Source

Expression

Leaf Root Panicle
FPKM 0.0 0.0 0.0

Homologues

Genome & Annotation Homologs Type Expression(FPKM)
Leaf Root Panicle
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) OsNip_04g0227200 SBH 0.000000 0.000000 0.000000
Nipponbare | IRGSP 1.0 | MSU LOC_Os04g15630 RBH 0.0 0.0 0.0
Nipponbare | IRGSP 1.0 | RAP-db Os04g0226800 RBH None None None
Azucena | AzucenaRS1 | Gramene(+IsoSeq) OsAzu_04g0004980 SBH 0.244290 0.967602 2.680362
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) OsKeNa_04g0005610 RBH 0.153115 0.776981 0.993871
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) OsCMeo_04g0005230 SBH 0.295748 0.296784 3.057565
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) OsARC_04g0005050 RBH 0.056989 0.043205 None
PR 106 | Os127742RS1 | Gramene(+IsoSeq) OsPr106_04g0005010 RBH 2.133982 0.0 0.572953
Minghui 63 | MH63RS3 | HZAU OsMH63_04G0127900 RBH 0.216415 2.402706 0.363747
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) OsIR64_04g0005040 RBH 0.061083 0.000000 0.038774
Zhenshan 97 | ZS97RS3 | HZAU OsZS97_04G0134600 RBH 0.413163 2.8508155 0.5746895
LIMA | Os127564RS1 | Gramene(+IsoSeq) OsLima_04g0004840 RBH 0.0 0.026355 None
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) OsKYG_04g0005210 RBH 0.230304 0.0 None
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) OsGoSa_04g0004960 RBH 15.101873 29.857210 None
LIU XU | Os125827RS1 | Gramene(+IsoSeq) OsLiXu_04g0004790 RBH 0.000000 0.0 0.000000
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) OsLaMu_04g0005110 RBH 0.111805 0.0 None
N22 | OsN22RS2 | Gramene(+IsoSeq) OsN22_04G005130 RBH 0.0 0.277339 0.331939
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) OsNaBo_04g0004950 RBH 0.0 0.000000 0.244750
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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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