Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_Ung0001810 | OGI:99006430 | 1/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | ChrUN-Ctg34:238867-242467 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ttaaccctgtagctccaaaaaagtttctttgatttcaacaacttcagcataaacctcttgcattactggtcgatcttttggtatctctaccgagcatgagagaccaagtttagccagttgcgtgatgcagctcaaaattctgaccgtttcatggtaatgctgttcatcttctaaatttggcatgatattaggatctatgatcttcccaatgttatgaggaaacgccttttccacgaatttgtgaaggctcatgccatcattaaacatgccatcagttggacgcttccctgttagcatttctaggatgataattccatagctgtatacatcgccccctgtagagattttgcttccaaaaccatattctgcaatattatataagggtattcaaaagattgaccgcctcatactattgaaatattaaaagaaaaaaaagatctaatgaatagaaaagtgaattatgaatgcatataaacaaacaggagacgttacaaacatcgtactgtttctgtacttacaaaatattacctggtgcaatgtatccaattgatcctcttggtcctgctaagctcgtagaactgttaatcgttgaagaactataactgtgaagaaacttacttaacccaaagtcgccaagacgtgcacccatggcatcatctataagtacattgctgggttttaaatcacaatggactataggtggtacgcaatagttatgtagataatccagggcagcagctatgtcagctgcaattgttattctagaggcgaaactcaactgtatatttaatccatacgtgatatggttcagatggagccagttctcaaggttaccattcggcatataatcaagaataagagctttgaactcatgtcctattggatcaaatgttgagcatgcagtaatcacgcttacaagattacgatgacgagtgttcctcagtgcctcacactcagcaaggaagctcttcgggcctccatgttgatcaagtttgaaaactttgatagcgacaacttgttgttcaaactcaaatacacctctgtacactgatccatatttacctgaaccaaccatattggctgaagagaatccatttgttgctttgtctaaatcagcataagagaaattcttcccatcattgcaggattgatgaacatcctgtttgactttctttctctttttcaaaagaatgagtgcaaagcaagataacaagaccaaaggaagagcagtaaacactaccgtcttcacaacgttggagttgtgtctttgtttagatatatttgtgttgcaaagcggcacctgtaacatttgggtgctggcacataacttttggttcccttgaatgaacacctcgcttgcattttcaaatatcccacctgttggtacctgtccttcaagattgttgaaggacaaatttagaagtctcagattgttgaaggaatccaaaaagcgagggatttcaccagataagttgttttgagaaagatccaggacggtgatgcctcttaaattactgaaagaatcagggattgtgccatcaagacggttcccttccatgtggagggtctccaagtggacacattcacctatagtagaggggatttgtccagataactggttattggaaatatcaaggggcccaaggttgattatgccactaatctccagtggaattcttccagagagtttgttgtgagacagatccagacctctagaaagggaggaaagagtaaatacctcccttggtatggtcccattaaagctgttatacgagagattcattatctccaagtctttgcaacgtcctaaagcttctgggattgaaccactcaaataattttcttctaaatggagctcacttaattgattgagattaccaattgagcgtggaatttgcccagaaagtttgttctgggataaccttaggtcaaacagattttgaagatttccaagtgaaacaggaatatttccagtaagcaaattcctatccaggtaaagaactgagaggtttgtgaggtgttccagctctttcggtatggtgccaaatattttattttctgttaaaaggagtagctctaagtttttggaaaggctcgcaatggtacctgggcctggcagtactccttcaagtatgtttgagtccaacagtaacctcactaattgtgtgcaatttgttaatgaggataagaaagaccaatctccagcttcaagccgattcttgcctagatccaattctactaagttaggcagagtcccaaaagaaggaacaactccctggaatgcgttgtcccggagattaatgaccacaagatttgttccgtttgctagtgaaatggggatttgaccttggaattggtttgcttgcataatcaaagtttggatacttggaagggtatatccaatgctgtatggaattttcccggtgagactattcttgcccatgccaaggtatgtgagttctgacatgttgtaaatagatgcgggcacagttcctgacagaaggttgtaagaaaaatctaatatttgcaggtctggaattgtacctatactcgtggggatgctaccttcaaaattgttagccccaagcaagagccagagaagtgaagagaaattccctattgtggaaggtatggtgcctgcaagatcatttgactgcacgataaaatattgcaagggtgagtcaatattcattaaagtcggcattgtcccgacaaagttgttcactccaagagctaattttctgagtgatgtgctgttaaacaaggcaggaggaatctctccagtgagatgatttcttgttaaactcaacacttgaagtgacgagctgttagctaggagagatggaattggtcctgtgaggctattatttgccagaattacagacacaagagaagaggtgctaccaagtgaaagaggaatgccgcccgttagactgtttccagctaaatgtaaaaccgaaaggttttggagcatccccaactcttctggtattcctccagtgagcatgttgaaatccaagttgagcacttgaagatttaaacagtgtctcaggttttggggaatctcaccttgtaggatgttgctcccgagatctacggtttgaagctgatgacatgaagatagagtgtctgggatcttgcctcttagtttgtttgagctgagattaaggtactgtagcttgtttagttgcccaagttcacgtgggatctcgccgcttagctgattatctgcgaggtgtattcttgtgaggaaagtgagattggcgatgcagggtggtatttgtccatctaggtcgaatgactcaagttccagtgcaacaacacgagatgagtttcttttgctgcaggtaacaccagaccaatcgcagaattgatgggagtcattcttccatgtggctaggattccatctgtgcttgtgagatggagcttaaggcaaagaagtgactggaattcgatgcttggttggtcgtagagagttgtagcacctgatgaggatgcaaagaatgataggagataagagaggataacggccaagggcagccgagaacggatgctggttgccacgagacagtgcctatttttactattagatatggtcat
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| CDS seq | atgaccatatctaatagtaaaaataggcactgtctcgtggcaaccagcatccgttctcggctgcccttggccgttatcctctcttatctcctatcattctttgcatcctcatcaggtgctacaactctctacgaccaaccaagcatcgaattccagtcacttctttgccttaagctccatctcacaagcacagatggaatcctagccacatggaagaatgactcccatcaattctgcgattggtctggtgttacctgcagcaaaagaaactcatctcgtgttgttgcactggaacttgagtcattcgacctagatggacaaataccaccctgcatcgccaatctcactttcctcacaagaatacacctcgcagataatcagctaagcggcgagatcccacgtgaacttgggcaactaaacaagctacagtaccttaatctcagctcaaacaaactaagaggcaagatcccagacactctatcttcatgtcatcagcttcaaaccgtagatctcgggagcaacatcctacaaggtgagattccccaaaacctgagacactgtttaaatcttcaagtgctcaacttggatttcaacatgctcactggaggaataccagaagagttggggatgctccaaaacctttcggttttacatttagctggaaacagtctaacgggcggcattcctctttcacttggtagcacctcttctcttgtgtctgtaattctggcaaataatagcctcacaggaccaattccatctctcctagctaacagctcgtcacttcaagtgttgagtttaacaagaaatcatctcactggagagattcctcctgccttgtttaacagcacatcactcagaaaattagctcttggagtgaacaactttgtcgggacaatgccgactttaatgaatattgactcacccttgcaatattttatcgtgcagtcaaatgatcttgcaggcaccataccttccacaatagggaatttctcttcacttctctggctcttgcttggggctaacaattttgaaggtagcatccccacgagtataggtacaattccagacctgcaaatattagatttttcttacaaccttctgtcaggaactgtgcccgcatctatttacaacatgtcagaactcacataccttggcatgggcaagaatagtctcaccgggaaaattccatacagcattggatatacccttccaagtatccaaactttgattatgcaagcaaaccaattccaaggtcaaatccccatttcactagcaaacggaacaaatcttgtggtcattaatctccgggacaacgcattccagggagttgttccttcttttgggactctgcctaacttagtagaattggatctaggcaagaatcggcttgaagctggagattggtctttcttatcctcattaacaaattgcacacaattagtgaggttactgttggactcaaacatacttgaaggagtactgccaggcccaggtaccattgcgagcctttccaaaaacttagagctactccttttaacagaaaataaaatatttggcaccataccgaaagagctggaacacctcacaaacctctcagttctttacctggataggaatttgcttactggaaatattcctgtttcacttggaaatcttcaaaatctgtttgacctaaggttatcccagaacaaactttctgggcaaattccacgctcaattggtaatctcaatcaattaagtgagctccatttagaagaaaattatttgagtggttcaatcccagaagctttaggacgttgcaaagacttggagataatgaatctctcgtataacagctttaatgggaccataccaagggaggtatttactctttcctccctttctagaggtctggatctgtctcacaacaaactctctggaagaattccactggagattagtggcataatcaaccttgggccccttgatatttccaataaccagttatctggacaaatcccctctactataggtgaatgtgtccacttggagaccctccacatggaagggaaccgtcttgatggcacaatccctgattctttcagtaatttaagaggcatcaccgtcctggatctttctcaaaacaacttatctggtgaaatccctcgctttttggattccttcaacaatctgagacttctaaatttgtccttcaacaatcttgaaggacaggtaccaacaggtgggatatttgaaaatgcaagcgaggtgttcattcaagggaaccaaaagttatgtgccagcacccaaatgttacaggtgccgctttgcaacacaaatatatctaaacaaagacacaactccaacgttgtgaagacggtagtgtttactgctcttcctttggtcttgttatcttgctttgcactcattcttttgaaaaagagaaagaaagtcaaacaggatgttcatcaatcctgcaatgatgggaagaatttctcttatgctgatttagacaaagcaacaaatggattctcttcagccaatatggttggttcaggtaaatatggatcagtgtacagaggtgtatttgagtttgaacaacaagttgtcgctatcaaagttttcaaacttgatcaacatggaggcccgaagagcttccttgctgagtgtgaggcactgaggaacactcgtcatcgtaatcttgtaagcgtgattactgcatgctcaacatttgatccaataggacatgagttcaaagctcttattcttgattatatgccgaatggtaaccttgagaactggctccatctgaaccatatcacgtatggattaaatatacagttgagtttcgcctctagaataacaattgcagctgacatagctgctgccctggattatctacataactattgcgtaccacctatagtccattgtgatttaaaacccagcaatgtacttatagatgatgccatgggtgcacgtcttggcgactttgggttaaaatatggttttggaagcaaaatctctacagggggcgatgtatacagctatggaattatcatcctagaaatgctaacagggaagcgtccaactgatggcatgtttaatgatggcatgagccttcacaaattcgtggaaaaggcgtttcctcataacattgggaagatcatagatcctaatatcatgccaaatttagaagatgaacagcattaccatgaaacggtcagaattttgagctgcatcacgcaactggctaaacttggtctctcatgctcggtagagataccaaaagatcgaccagtaatgcaagaggtttatgctgaagttgttgaaatcaaagaaacttttttggagctacagggttaa
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| Protein seq | MTISNSKNRHCLVATSIRSRLPLAVILSYLLSFFASSSGATTLYDQPSIEFQSLLCLKLHLTSTDGILATWKNDSHQFCDWSGVTCSKRNSSRVVALELESFDLDGQIPPCIANLTFLTRIHLADNQLSGEIPRELGQLNKLQYLNLSSNKLRGKIPDTLSSCHQLQTVDLGSNILQGEIPQNLRHCLNLQVLNLDFNMLTGGIPEELGMLQNLSVLHLAGNSLTGGIPLSLGSTSSLVSVILANNSLTGPIPSLLANSSSLQVLSLTRNHLTGEIPPALFNSTSLRKLALGVNNFVGTMPTLMNIDSPLQYFIVQSNDLAGTIPSTIGNFSSLLWLLLGANNFEGSIPTSIGTIPDLQILDFSYNLLSGTVPASIYNMSELTYLGMGKNSLTGKIPYSIGYTLPSIQTLIMQANQFQGQIPISLANGTNLVVINLRDNAFQGVVPSFGTLPNLVELDLGKNRLEAGDWSFLSSLTNCTQLVRLLLDSNILEGVLPGPGTIASLSKNLELLLLTENKIFGTIPKELEHLTNLSVLYLDRNLLTGNIPVSLGNLQNLFDLRLSQNKLSGQIPRSIGNLNQLSELHLEENYLSGSIPEALGRCKDLEIMNLSYNSFNGTIPREVFTLSSLSRGLDLSHNKLSGRIPLEISGIINLGPLDISNNQLSGQIPSTIGECVHLETLHMEGNRLDGTIPDSFSNLRGITVLDLSQNNLSGEIPRFLDSFNNLRLLNLSFNNLEGQVPTGGIFENASEVFIQGNQKLCASTQMLQVPLCNTNISKQRHNSNVVKTVVFTALPLVLLSCFALILLKKRKKVKQDVHQSCNDGKNFSYADLDKATNGFSSANMVGSGKYGSVYRGVFEFEQQVVAIKVFKLDQHGGPKSFLAECEALRNTRHRNLVSVITACSTFDPIGHEFKALILDYMPNGNLENWLHLNHITYGLNIQLSFASRITIAADIAAALDYLHNYCVPPIVHCDLKPSNVLIDDAMGARLGDFGLKYGFGSKISTGGDVYSYGIIILEMLTGKRPTDGMFNDGMSLHKFVEKAFPHNIGKIIDPNIMPNLEDEQHYHETVRILSCITQLAKLGLSCSVEIPKDRPVMQEVYAEVVEIKETFLELQG |
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| Function | Probable LRR receptor-like serine/threonine-protein kinase At3g47570 [UniProtKB/Swiss-Prot:C0LGP4] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_Ung0001810 | OsLima_Ung0001810.01 | ChrUN-Ctg34 | 238867 | 242467 | - | NAM | ||
| CDS seq | atgaccatatctaatagtaaaaataggcactgtctcgtggcaaccagcatccgttctcggctgcccttggccgttatcctctcttatctcctatcattctttgcatcctcatcaggtgctacaactctctacgaccaaccaagcatcgaattccagtcacttctttgccttaagctccatctcacaagcacagatggaatcctagccacatggaagaatgactcccatcaattctgcgattggtctggtgttacctgcagcaaaagaaactcatctcgtgttgttgcactggaacttgagtcattcgacctagatggacaaataccaccctgcatcgccaatctcactttcctcacaagaatacacctcgcagataatcagctaagcggcgagatcccacgtgaacttgggcaactaaacaagctacagtaccttaatctcagctcaaacaaactaagaggcaagatcccagacactctatcttcatgtcatcagcttcaaaccgtagatctcgggagcaacatcctacaaggtgagattccccaaaacctgagacactgtttaaatcttcaagtgctcaacttggatttcaacatgctcactggaggaataccagaagagttggggatgctccaaaacctttcggttttacatttagctggaaacagtctaacgggcggcattcctctttcacttggtagcacctcttctcttgtgtctgtaattctggcaaataatagcctcacaggaccaattccatctctcctagctaacagctcgtcacttcaagtgttgagtttaacaagaaatcatctcactggagagattcctcctgccttgtttaacagcacatcactcagaaaattagctcttggagtgaacaactttgtcgggacaatgccgactttaatgaatattgactcacccttgcaatattttatcgtgcagtcaaatgatcttgcaggcaccataccttccacaatagggaatttctcttcacttctctggctcttgcttggggctaacaattttgaaggtagcatccccacgagtataggtacaattccagacctgcaaatattagatttttcttacaaccttctgtcaggaactgtgcccgcatctatttacaacatgtcagaactcacataccttggcatgggcaagaatagtctcaccgggaaaattccatacagcattggatatacccttccaagtatccaaactttgattatgcaagcaaaccaattccaaggtcaaatccccatttcactagcaaacggaacaaatcttgtggtcattaatctccgggacaacgcattccagggagttgttccttcttttgggactctgcctaacttagtagaattggatctaggcaagaatcggcttgaagctggagattggtctttcttatcctcattaacaaattgcacacaattagtgaggttactgttggactcaaacatacttgaaggagtactgccaggcccaggtaccattgcgagcctttccaaaaacttagagctactccttttaacagaaaataaaatatttggcaccataccgaaagagctggaacacctcacaaacctctcagttctttacctggataggaatttgcttactggaaatattcctgtttcacttggaaatcttcaaaatctgtttgacctaaggttatcccagaacaaactttctgggcaaattccacgctcaattggtaatctcaatcaattaagtgagctccatttagaagaaaattatttgagtggttcaatcccagaagctttaggacgttgcaaagacttggagataatgaatctctcgtataacagctttaatgggaccataccaagggaggtatttactctttcctccctttctagaggtctggatctgtctcacaacaaactctctggaagaattccactggagattagtggcataatcaaccttgggccccttgatatttccaataaccagttatctggacaaatcccctctactataggtgaatgtgtccacttggagaccctccacatggaagggaaccgtcttgatggcacaatccctgattctttcagtaatttaagaggcatcaccgtcctggatctttctcaaaacaacttatctggtgaaatccctcgctttttggattccttcaacaatctgagacttctaaatttgtccttcaacaatcttgaaggacaggtaccaacaggtgggatatttgaaaatgcaagcgaggtgttcattcaagggaaccaaaagttatgtgccagcacccaaatgttacaggtgccgctttgcaacacaaatatatctaaacaaagacacaactccaacgttgtgaagacggtagtgtttactgctcttcctttggtcttgttatcttgctttgcactcattcttttgaaaaagagaaagaaagtcaaacaggatgttcatcaatcctgcaatgatgggaagaatttctcttatgctgatttagacaaagcaacaaatggattctcttcagccaatatggttggttcaggtaaatatggatcagtgtacagaggtgtatttgagtttgaacaacaagttgtcgctatcaaagttttcaaacttgatcaacatggaggcccgaagagcttccttgctgagtgtgaggcactgaggaacactcgtcatcgtaatcttgtaagcgtgattactgcatgctcaacatttgatccaataggacatgagttcaaagctcttattcttgattatatgccgaatggtaaccttgagaactggctccatctgaaccatatcacgtatggattaaatatacagttgagtttcgcctctagaataacaattgcagctgacatagctgctgccctggattatctacataactattgcgtaccacctatagtccattgtgatttaaaacccagcaatgtacttatagatgatgccatgggtgcacgtcttggcgactttgggttaaaatatggttttggaagcaaaatctctacagggggcgatgtatacagctatggaattatcatcctagaaatgctaacagggaagcgtccaactgatggcatgtttaatgatggcatgagccttcacaaattcgtggaaaaggcgtttcctcataacattgggaagatcatagatcctaatatcatgccaaatttagaagatgaacagcattaccatgaaacggtcagaattttgagctgcatcacgcaactggctaaacttggtctctcatgctcggtagagataccaaaagatcgaccagtaatgcaagaggtttatgctgaagttgttgaaatcaaagaaacttttttggagctacagggttaa
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| Protein seq | MTISNSKNRHCLVATSIRSRLPLAVILSYLLSFFASSSGATTLYDQPSIEFQSLLCLKLHLTSTDGILATWKNDSHQFCDWSGVTCSKRNSSRVVALELESFDLDGQIPPCIANLTFLTRIHLADNQLSGEIPRELGQLNKLQYLNLSSNKLRGKIPDTLSSCHQLQTVDLGSNILQGEIPQNLRHCLNLQVLNLDFNMLTGGIPEELGMLQNLSVLHLAGNSLTGGIPLSLGSTSSLVSVILANNSLTGPIPSLLANSSSLQVLSLTRNHLTGEIPPALFNSTSLRKLALGVNNFVGTMPTLMNIDSPLQYFIVQSNDLAGTIPSTIGNFSSLLWLLLGANNFEGSIPTSIGTIPDLQILDFSYNLLSGTVPASIYNMSELTYLGMGKNSLTGKIPYSIGYTLPSIQTLIMQANQFQGQIPISLANGTNLVVINLRDNAFQGVVPSFGTLPNLVELDLGKNRLEAGDWSFLSSLTNCTQLVRLLLDSNILEGVLPGPGTIASLSKNLELLLLTENKIFGTIPKELEHLTNLSVLYLDRNLLTGNIPVSLGNLQNLFDLRLSQNKLSGQIPRSIGNLNQLSELHLEENYLSGSIPEALGRCKDLEIMNLSYNSFNGTIPREVFTLSSLSRGLDLSHNKLSGRIPLEISGIINLGPLDISNNQLSGQIPSTIGECVHLETLHMEGNRLDGTIPDSFSNLRGITVLDLSQNNLSGEIPRFLDSFNNLRLLNLSFNNLEGQVPTGGIFENASEVFIQGNQKLCASTQMLQVPLCNTNISKQRHNSNVVKTVVFTALPLVLLSCFALILLKKRKKVKQDVHQSCNDGKNFSYADLDKATNGFSSANMVGSGKYGSVYRGVFEFEQQVVAIKVFKLDQHGGPKSFLAECEALRNTRHRNLVSVITACSTFDPIGHEFKALILDYMPNGNLENWLHLNHITYGLNIQLSFASRITIAADIAAALDYLHNYCVPPIVHCDLKPSNVLIDDAMGARLGDFGLKYGFGSKISTGGDVYSYGIIILEMLTGKRPTDGMFNDGMSLHKFVEKAFPHNIGKIIDPNIMPNLEDEQHYHETVRILSCITQLAKLGLSCSVEIPKDRPVMQEVYAEVVEIKETFLELQG
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.049489 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_06g0581500 | SBH | 0.767197 | 0.973630 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g38340 | SBH | 0.518819 | 0.654847 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os06g0581500 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0020610 | SBH | 0.000000 | 0.0 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0020400 | SBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0020520 | SBH | 0.0 | 1.293095 | 0.484840 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0020270 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0020700 | SBH | 0.0 | 0.0 | 0.888569 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0366000 | SBH | 0.3113895 | 0.4256115 | 0.166195 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0020110 | SBH | 0.081516 | 0.0 | 0.069260 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0333200 | SBH | 0.4696785 | 0.320735 | 0.1207575 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0020570 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0020610 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0020220 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_Ung0036870 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0020370 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G020280 | SBH | 0.046913 | 0.0 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0020520 | SBH | 0.0 | 1.110716 | 0.0 |
