Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLaMu_06g0020370 | OGI:06063330 | 14/16 | LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | Chr06:24264563-24268157 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ttaaccctgtagctccaaaaaagtttctttgatttcaacaacttcagcataaacctcttgcattactggtcgatcttttggtatctctaccgagcatgagagaccaagtttagccagttgcgtgatgcagctcaaaattctgaccgtttcatggtaatgctgttcatcttctaaatttggcatgatattaggatctatgatcttcccaatgttatgaggaaacgccttttccacgaatttgtgaaggctcatgccatcattaaacatgccatcagttggacgcttccctgttagcatttctaggatgataattccatagctgtatacatcgccctctgtagagattttgcttccaaaaccatattctgcaatattatataagggtattcaaaagattgaccgcctcatactattgaaatattaaaagaaaaaaaagatctaatgaatagaaaagtgaattatgaatgcatataaacaaacaggagacgttacaaacatcgtactgtttctgtacttacaaaatattacctggtgcaatgtatccaattgatcctcttggtcctgctaagctcgtagaactgttaatcgttgaagaactataactgtgaagaaacttacttaacccaaagtcgccaagacgtgcacccatggcatcatctataagtacattgctgggttttaaatcacaatggactataggtggtacgcaatagttatgtagataatccagggcagcagctatgtcagctgcaattgttattctagaggcgaaactcaactgtatatttaatccatacgtgatatggttcagatggagccagttctcaaggttaccattcggcatataatcaagaataagagctttgaactcatgtcctattggatcaaatgttgagcatgcagtaatcacgcttacaagattacgatgacgagtgttcctcagtgcctcacactcagcaaggaagctcttcgggcctccatgttgatcaagtttgaaaactttgatagcgacaacttgttgttcaaactcaaatacacctctgtacactgatccatatttacctgaaccaaccatattggctgaagagaatccatttgttgctttgtctaaatcagcataagagaaattcttcccatcattgcaggattgatgaacatcctgtttgactttctttctctttttcaaaagaatgagtgcaaagcaagataacaagaccaatggaagagcagtaaacactaccgtcttcacaacgttggagttgtgtctttgtttagatatatttgtgttgcaaagcggcacctgtaacatttgggtgctggcacataacttttggttcccttgaatgaacacctcgcttgcattttcaaatatcccacctgttggtacctgtccttcaagattgttgaaggacaaatttagaagtctcagattgttgaaggaatccaaaaagcgagggatttcaccagataagttgttttgagaaagatccaggacggtgatgcctcttaaattactgaaagaatcagggattgtgccatcaagacggttcccttccatgtggagggtctccaagtggacacattcacctatagtagaggggatttgtccagataactggttattggaaatatcaaggggcccaaggttgattaggccactaatctccagtggaattcttccagagagtttgttgtgagacagatccagacctctagaaagggaggaaagagtaaatacctcccttggtatggtcccattaaagctgttatacgagagattcattatctccaagtttttgcaacgtcctaaagcttctgggattgaaccactcaaataattttcttctaaatggagctcacttaattgattgagattaccaattgagcgtggaatttgcccagaaagtttgttctgggataaccttaggtcaaacagattttgaagatttccaagtgaaacaggaatatttccagtaagcaaattcctatccaggtaaagaactgagaggtttgtgaggtgttccagctctttcggtatggtgccaaatattttattttctgttaaaaggagtagctctaagtttttggaaaggctcgcaatggtacctgggcctggcagtactccttcaagtatgtttgagtccaacagtaacctcactaattgtgtgcaatttgttaatgaggataagaaagaccaatctccagcttcaagccgattcttgcctagatccaattctactaagttaggcagagtcccaaaagaaggaacaactccctggaatgcgttgtcccggagattaatgaccacaagatttgttccgtttgctagtgaaatggggatttgaccttggaattggtttgcttgcataatcaaagtttggatacttggaagggtatatccaatgctgtatggaattttcccggtgagactattcttgcccatgccaaggtatgtgagttctgacatgttgtaaatagatgcgggcacagttcctgacagaaggttgtaagaaaaatctaatatttgcaggtctggaattgtacctatactcgtggggatgctaccttcaaaattgttagccccaagcaagagccagagaagtgaagagaaattccctattgtggaaggtatggtgcctgcaagatcatttgactgcacgataaaatattgcaagggtgagtcaatattcattaaagtcggcattgtcccgacaaagttgttcactccaagagctaattttctgagtgatgtgctgttaaacaaggcaggaggaatctctccagtgagatgatttcttgttaaactcaacacttgaagtgacgagctgttagctaggagagatggaattggtcctgtgaggctattatttgccagaattacagacacaagagaagaggtgctaccaagtgaaagaggaatgccgcccgttagactgtttccagctaaatgtaaaaccgaaaggttttggagcatccccaactcttctggtattcctccagtgagcatgttgaaatccaagttgagcacttgaagatttaaacagtgtctcaggttttggggaatctcaccttgtaggatgttgctcccgagatctacggtttgaagctgatgacatgaagatagagtgtctgggatcttgcctcttagtttgtttgagctgagattaaggtactgtagcttgtttagttgcccaagttcacgtgggatctcgccgcttagctgattatctgcgaggtgtattcttgtgaggaaagtgagattggcgatgcagggtggtatttgtccatctaggtcgaatgactcaagttccagtgcaacaacacgagatgagtttcttttgctgcaggtaacaccagaccaatcgcagaattgatgggagtcattcttccatgtggctaggattccatctgtgcttgtgagatggagcttaaggcaaagaagtgactggaattcgatgcttggttggtcgtagagtgttgtagcacctgatgaggatgcaaagaatgataggagataagagaggataacggccaagggcagccgagaacggatgctggttgccacgagacagtgcctatatttactattagacat
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| CDS seq | atgtctaatagtaaatataggcactgtctcgtggcaaccagcatccgttctcggctgcccttggccgttatcctctcttatctcctatcattctttgcatcctcatcaggtgctacaacactctacgaccaaccaagcatcgaattccagtcacttctttgccttaagctccatctcacaagcacagatggaatcctagccacatggaagaatgactcccatcaattctgcgattggtctggtgttacctgcagcaaaagaaactcatctcgtgttgttgcactggaacttgagtcattcgacctagatggacaaataccaccctgcatcgccaatctcactttcctcacaagaatacacctcgcagataatcagctaagcggcgagatcccacgtgaacttgggcaactaaacaagctacagtaccttaatctcagctcaaacaaactaagaggcaagatcccagacactctatcttcatgtcatcagcttcaaaccgtagatctcgggagcaacatcctacaaggtgagattccccaaaacctgagacactgtttaaatcttcaagtgctcaacttggatttcaacatgctcactggaggaataccagaagagttggggatgctccaaaacctttcggttttacatttagctggaaacagtctaacgggcggcattcctctttcacttggtagcacctcttctcttgtgtctgtaattctggcaaataatagcctcacaggaccaattccatctctcctagctaacagctcgtcacttcaagtgttgagtttaacaagaaatcatctcactggagagattcctcctgccttgtttaacagcacatcactcagaaaattagctcttggagtgaacaactttgtcgggacaatgccgactttaatgaatattgactcacccttgcaatattttatcgtgcagtcaaatgatcttgcaggcaccataccttccacaatagggaatttctcttcacttctctggctcttgcttggggctaacaattttgaaggtagcatccccacgagtataggtacaattccagacctgcaaatattagatttttcttacaaccttctgtcaggaactgtgcccgcatctatttacaacatgtcagaactcacataccttggcatgggcaagaatagtctcaccgggaaaattccatacagcattggatatacccttccaagtatccaaactttgattatgcaagcaaaccaattccaaggtcaaatccccatttcactagcaaacggaacaaatcttgtggtcattaatctccgggacaacgcattccagggagttgttccttcttttgggactctgcctaacttagtagaattggatctaggcaagaatcggcttgaagctggagattggtctttcttatcctcattaacaaattgcacacaattagtgaggttactgttggactcaaacatacttgaaggagtactgccaggcccaggtaccattgcgagcctttccaaaaacttagagctactccttttaacagaaaataaaatatttggcaccataccgaaagagctggaacacctcacaaacctctcagttctttacctggataggaatttgcttactggaaatattcctgtttcacttggaaatcttcaaaatctgtttgacctaaggttatcccagaacaaactttctgggcaaattccacgctcaattggtaatctcaatcaattaagtgagctccatttagaagaaaattatttgagtggttcaatcccagaagctttaggacgttgcaaaaacttggagataatgaatctctcgtataacagctttaatgggaccataccaagggaggtatttactctttcctccctttctagaggtctggatctgtctcacaacaaactctctggaagaattccactggagattagtggcctaatcaaccttgggccccttgatatttccaataaccagttatctggacaaatcccctctactataggtgaatgtgtccacttggagaccctccacatggaagggaaccgtcttgatggcacaatccctgattctttcagtaatttaagaggcatcaccgtcctggatctttctcaaaacaacttatctggtgaaatccctcgctttttggattccttcaacaatctgagacttctaaatttgtccttcaacaatcttgaaggacaggtaccaacaggtgggatatttgaaaatgcaagcgaggtgttcattcaagggaaccaaaagttatgtgccagcacccaaatgttacaggtgccgctttgcaacacaaatatatctaaacaaagacacaactccaacgttgtgaagacggtagtgtttactgctcttccattggtcttgttatcttgctttgcactcattcttttgaaaaagagaaagaaagtcaaacaggatgttcatcaatcctgcaatgatgggaagaatttctcttatgctgatttagacaaagcaacaaatggattctcttcagccaatatggttggttcaggtaaatatggatcagtgtacagaggtgtatttgagtttgaacaacaagttgtcgctatcaaagttttcaaacttgatcaacatggaggcccgaagagcttccttgctgagtgtgaggcactgaggaacactcgtcatcgtaatcttgtaagcgtgattactgcatgctcaacatttgatccaataggacatgagttcaaagctcttattcttgattatatgccgaatggtaaccttgagaactggctccatctgaaccatatcacgtatggattaaatatacagttgagtttcgcctctagaataacaattgcagctgacatagctgctgccctggattatctacataactattgcgtaccacctatagtccattgtgatttaaaacccagcaatgtacttatagatgatgccatgggtgcacgtcttggcgactttgggttaaaatatggttttggaagcaaaatctctacagagggcgatgtatacagctatggaattatcatcctagaaatgctaacagggaagcgtccaactgatggcatgtttaatgatggcatgagccttcacaaattcgtggaaaaggcgtttcctcataacattgggaagatcatagatcctaatatcatgccaaatttagaagatgaacagcattaccatgaaacggtcagaattttgagctgcatcacgcaactggctaaacttggtctctcatgctcggtagagataccaaaagatcgaccagtaatgcaagaggtttatgctgaagttgttgaaatcaaagaaacttttttggagctacagggttaa
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| Protein seq | MSNSKYRHCLVATSIRSRLPLAVILSYLLSFFASSSGATTLYDQPSIEFQSLLCLKLHLTSTDGILATWKNDSHQFCDWSGVTCSKRNSSRVVALELESFDLDGQIPPCIANLTFLTRIHLADNQLSGEIPRELGQLNKLQYLNLSSNKLRGKIPDTLSSCHQLQTVDLGSNILQGEIPQNLRHCLNLQVLNLDFNMLTGGIPEELGMLQNLSVLHLAGNSLTGGIPLSLGSTSSLVSVILANNSLTGPIPSLLANSSSLQVLSLTRNHLTGEIPPALFNSTSLRKLALGVNNFVGTMPTLMNIDSPLQYFIVQSNDLAGTIPSTIGNFSSLLWLLLGANNFEGSIPTSIGTIPDLQILDFSYNLLSGTVPASIYNMSELTYLGMGKNSLTGKIPYSIGYTLPSIQTLIMQANQFQGQIPISLANGTNLVVINLRDNAFQGVVPSFGTLPNLVELDLGKNRLEAGDWSFLSSLTNCTQLVRLLLDSNILEGVLPGPGTIASLSKNLELLLLTENKIFGTIPKELEHLTNLSVLYLDRNLLTGNIPVSLGNLQNLFDLRLSQNKLSGQIPRSIGNLNQLSELHLEENYLSGSIPEALGRCKNLEIMNLSYNSFNGTIPREVFTLSSLSRGLDLSHNKLSGRIPLEISGLINLGPLDISNNQLSGQIPSTIGECVHLETLHMEGNRLDGTIPDSFSNLRGITVLDLSQNNLSGEIPRFLDSFNNLRLLNLSFNNLEGQVPTGGIFENASEVFIQGNQKLCASTQMLQVPLCNTNISKQRHNSNVVKTVVFTALPLVLLSCFALILLKKRKKVKQDVHQSCNDGKNFSYADLDKATNGFSSANMVGSGKYGSVYRGVFEFEQQVVAIKVFKLDQHGGPKSFLAECEALRNTRHRNLVSVITACSTFDPIGHEFKALILDYMPNGNLENWLHLNHITYGLNIQLSFASRITIAADIAAALDYLHNYCVPPIVHCDLKPSNVLIDDAMGARLGDFGLKYGFGSKISTEGDVYSYGIIILEMLTGKRPTDGMFNDGMSLHKFVEKAFPHNIGKIIDPNIMPNLEDEQHYHETVRILSCITQLAKLGLSCSVEIPKDRPVMQEVYAEVVEIKETFLELQG |
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| Function | Probable LRR receptor-like serine/threonine-protein kinase At3g47570 [UniProtKB/Swiss-Prot:C0LGP4] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLaMu_06g0020370 | OsLaMu_06g0020370.01 | Chr06 | 24264563 | 24268157 | - | NAM | ||
| CDS seq | atgtctaatagtaaatataggcactgtctcgtggcaaccagcatccgttctcggctgcccttggccgttatcctctcttatctcctatcattctttgcatcctcatcaggtgctacaacactctacgaccaaccaagcatcgaattccagtcacttctttgccttaagctccatctcacaagcacagatggaatcctagccacatggaagaatgactcccatcaattctgcgattggtctggtgttacctgcagcaaaagaaactcatctcgtgttgttgcactggaacttgagtcattcgacctagatggacaaataccaccctgcatcgccaatctcactttcctcacaagaatacacctcgcagataatcagctaagcggcgagatcccacgtgaacttgggcaactaaacaagctacagtaccttaatctcagctcaaacaaactaagaggcaagatcccagacactctatcttcatgtcatcagcttcaaaccgtagatctcgggagcaacatcctacaaggtgagattccccaaaacctgagacactgtttaaatcttcaagtgctcaacttggatttcaacatgctcactggaggaataccagaagagttggggatgctccaaaacctttcggttttacatttagctggaaacagtctaacgggcggcattcctctttcacttggtagcacctcttctcttgtgtctgtaattctggcaaataatagcctcacaggaccaattccatctctcctagctaacagctcgtcacttcaagtgttgagtttaacaagaaatcatctcactggagagattcctcctgccttgtttaacagcacatcactcagaaaattagctcttggagtgaacaactttgtcgggacaatgccgactttaatgaatattgactcacccttgcaatattttatcgtgcagtcaaatgatcttgcaggcaccataccttccacaatagggaatttctcttcacttctctggctcttgcttggggctaacaattttgaaggtagcatccccacgagtataggtacaattccagacctgcaaatattagatttttcttacaaccttctgtcaggaactgtgcccgcatctatttacaacatgtcagaactcacataccttggcatgggcaagaatagtctcaccgggaaaattccatacagcattggatatacccttccaagtatccaaactttgattatgcaagcaaaccaattccaaggtcaaatccccatttcactagcaaacggaacaaatcttgtggtcattaatctccgggacaacgcattccagggagttgttccttcttttgggactctgcctaacttagtagaattggatctaggcaagaatcggcttgaagctggagattggtctttcttatcctcattaacaaattgcacacaattagtgaggttactgttggactcaaacatacttgaaggagtactgccaggcccaggtaccattgcgagcctttccaaaaacttagagctactccttttaacagaaaataaaatatttggcaccataccgaaagagctggaacacctcacaaacctctcagttctttacctggataggaatttgcttactggaaatattcctgtttcacttggaaatcttcaaaatctgtttgacctaaggttatcccagaacaaactttctgggcaaattccacgctcaattggtaatctcaatcaattaagtgagctccatttagaagaaaattatttgagtggttcaatcccagaagctttaggacgttgcaaaaacttggagataatgaatctctcgtataacagctttaatgggaccataccaagggaggtatttactctttcctccctttctagaggtctggatctgtctcacaacaaactctctggaagaattccactggagattagtggcctaatcaaccttgggccccttgatatttccaataaccagttatctggacaaatcccctctactataggtgaatgtgtccacttggagaccctccacatggaagggaaccgtcttgatggcacaatccctgattctttcagtaatttaagaggcatcaccgtcctggatctttctcaaaacaacttatctggtgaaatccctcgctttttggattccttcaacaatctgagacttctaaatttgtccttcaacaatcttgaaggacaggtaccaacaggtgggatatttgaaaatgcaagcgaggtgttcattcaagggaaccaaaagttatgtgccagcacccaaatgttacaggtgccgctttgcaacacaaatatatctaaacaaagacacaactccaacgttgtgaagacggtagtgtttactgctcttccattggtcttgttatcttgctttgcactcattcttttgaaaaagagaaagaaagtcaaacaggatgttcatcaatcctgcaatgatgggaagaatttctcttatgctgatttagacaaagcaacaaatggattctcttcagccaatatggttggttcaggtaaatatggatcagtgtacagaggtgtatttgagtttgaacaacaagttgtcgctatcaaagttttcaaacttgatcaacatggaggcccgaagagcttccttgctgagtgtgaggcactgaggaacactcgtcatcgtaatcttgtaagcgtgattactgcatgctcaacatttgatccaataggacatgagttcaaagctcttattcttgattatatgccgaatggtaaccttgagaactggctccatctgaaccatatcacgtatggattaaatatacagttgagtttcgcctctagaataacaattgcagctgacatagctgctgccctggattatctacataactattgcgtaccacctatagtccattgtgatttaaaacccagcaatgtacttatagatgatgccatgggtgcacgtcttggcgactttgggttaaaatatggttttggaagcaaaatctctacagagggcgatgtatacagctatggaattatcatcctagaaatgctaacagggaagcgtccaactgatggcatgtttaatgatggcatgagccttcacaaattcgtggaaaaggcgtttcctcataacattgggaagatcatagatcctaatatcatgccaaatttagaagatgaacagcattaccatgaaacggtcagaattttgagctgcatcacgcaactggctaaacttggtctctcatgctcggtagagataccaaaagatcgaccagtaatgcaagaggtttatgctgaagttgttgaaatcaaagaaacttttttggagctacagggttaa
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| Protein seq | MSNSKYRHCLVATSIRSRLPLAVILSYLLSFFASSSGATTLYDQPSIEFQSLLCLKLHLTSTDGILATWKNDSHQFCDWSGVTCSKRNSSRVVALELESFDLDGQIPPCIANLTFLTRIHLADNQLSGEIPRELGQLNKLQYLNLSSNKLRGKIPDTLSSCHQLQTVDLGSNILQGEIPQNLRHCLNLQVLNLDFNMLTGGIPEELGMLQNLSVLHLAGNSLTGGIPLSLGSTSSLVSVILANNSLTGPIPSLLANSSSLQVLSLTRNHLTGEIPPALFNSTSLRKLALGVNNFVGTMPTLMNIDSPLQYFIVQSNDLAGTIPSTIGNFSSLLWLLLGANNFEGSIPTSIGTIPDLQILDFSYNLLSGTVPASIYNMSELTYLGMGKNSLTGKIPYSIGYTLPSIQTLIMQANQFQGQIPISLANGTNLVVINLRDNAFQGVVPSFGTLPNLVELDLGKNRLEAGDWSFLSSLTNCTQLVRLLLDSNILEGVLPGPGTIASLSKNLELLLLTENKIFGTIPKELEHLTNLSVLYLDRNLLTGNIPVSLGNLQNLFDLRLSQNKLSGQIPRSIGNLNQLSELHLEENYLSGSIPEALGRCKNLEIMNLSYNSFNGTIPREVFTLSSLSRGLDLSHNKLSGRIPLEISGLINLGPLDISNNQLSGQIPSTIGECVHLETLHMEGNRLDGTIPDSFSNLRGITVLDLSQNNLSGEIPRFLDSFNNLRLLNLSFNNLEGQVPTGGIFENASEVFIQGNQKLCASTQMLQVPLCNTNISKQRHNSNVVKTVVFTALPLVLLSCFALILLKKRKKVKQDVHQSCNDGKNFSYADLDKATNGFSSANMVGSGKYGSVYRGVFEFEQQVVAIKVFKLDQHGGPKSFLAECEALRNTRHRNLVSVITACSTFDPIGHEFKALILDYMPNGNLENWLHLNHITYGLNIQLSFASRITIAADIAAALDYLHNYCVPPIVHCDLKPSNVLIDDAMGARLGDFGLKYGFGSKISTEGDVYSYGIIILEMLTGKRPTDGMFNDGMSLHKFVEKAFPHNIGKIIDPNIMPNLEDEQHYHETVRILSCITQLAKLGLSCSVEIPKDRPVMQEVYAEVVEIKETFLELQG
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_06g0581500 | SBH | 0.767197 | 0.973630 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g38830 | SBH | 0.260518 | 0.066984 | 0.061100 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os06g0581500 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0020610 | RBH | 0.000000 | 0.0 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0020400 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0020520 | RBH | 0.0 | 1.293095 | 0.484840 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0020270 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0020700 | RBH | 0.0 | 0.0 | 0.888569 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0366000 | SBH | 0.3113895 | 0.4256115 | 0.166195 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0020110 | RBH | 0.081516 | 0.0 | 0.069260 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0333200 | RBH | 0.4696785 | 0.320735 | 0.1207575 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0020570 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0020610 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0020220 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_Ung0036870 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0020660 | SBH | 0.049091 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G020280 | RBH | 0.046913 | 0.0 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0020520 | RBH | 0.0 | 1.110716 | 0.0 |
