Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os06g38830 | OGI:06063770 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr06:23049803-23052316 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TCATGACATGATTTTCAGGGTCACAATTATTCTCGGTATCTTCTTCAATGTTGAATATGTAAACGTCTTCAACTCCTTACAGGAAGGATCAGATGCTTGCTTGACTTTATTCCTCTTCTTCAGTAGAATGAGCGCTAAACATGATGTTAGAGCCAGACAAATAGCTATAGGTCCTACTATCTTAAGTATTTTATTGGTGTGCTTTCCCTTTGATGGCTTTACATTGCAGAGTGGTAACTGTAGCAATGGATATGTACCACATAACTTCTTGTTCCCTTGGATAAAAACCTCACTTGCATTCTGAAATATCCCTTCAGTTGGTACCTGTCCTTCAAAATCATTGAAGGACAAATTGAGAAGCTTCATGGACCCAAAGGATTCCATGAATTCAGGTATTTTACCAGATAGATTGTTCTGAGAAAGATCTAACTCAACAATGCCTCTTAAATTTATGAAAGAATCAGGAATTCGTCCATCAAGAAGGTTCCCTTCCATACGGAGAGAGCTTAAGTGGACACAGTCGCCAAGAGCAGAGGGAATTTGTCCTGACAGTCGGTTATTGGAAATATTTAGAATATCAAGATTGATCGAGCCACCAATCTCTGATGGTATTTCTCCATCGAGTTGGTTGTGAGACAAGTCCAACCATTCAGAAAGAGAGGAAAGAGTAACGAGTTCCTCTGGTATGCTACTATCAAAGCTGTTACAAGACAGGTTTAAAGCTTCTAGATTCTTGCAACTCCCTAAGGAGCTAGGAATCGGTCCACTCAAATTATTTTCCTGTAAGTAGAGCTCACTTAGATGACTTAGATTACCAAATGAAGTTGGAATTTGTCCTGAAATTTTGTTTTGGGATAAGCTTAGGATAAACAAGTTTAGCAGATTTCCAAGTGAATCTGGAAGATTTCCAGTAAGTAGATTTTTTTCCATATAAAGAAGCGTAAGGCTTGTGAGTTTCTCTATCTCTTGAGGTATGGTACCGGATATTTCATTTCCTGTTAGCAGCAACACCTGTAAGCTTGTTGAAAGTTTTGCGATGGAACTTGGTAGGGTTCCTTTGAGGATGTTTTTGTCCAGGCATAATTGAACCAACTGTCTACTAGTTATCAATGAGGATAAGAAAGACCAGTCTCCAGCTTCTAGTCGATTCATCCCGAGATTCAATTCCATCAAGTCAGGCAGGTTCCCAAAAGAAGGAATAATACCATGGAATGCATTGTCACGAAGATTAATCACTTGGAGATTTTTTGCAATGCCTAGTGAAGTGGGGATCTGCCCTTGGAATTGATTTCCTTGCAAGATCAGTGTTTTGATATTTGGAAGGGTATATCCTATGTTATCTGGAATTTCTCCAATGAGTTTATTAGTGCCCATGCCAAGGTATACGAGATTAGACATGTTGTACAGAGAAGCCGGAACTGTCCCTGACAAGTTGTTATATGTCAAGTCCAGTTCTTGCAAGTTTGGTATTCTGCTTAAACTAGATGGAATGGTTCCCTGGAAGTTGTTCTGTGAAAGGTAGAGTATTTCAAGGGAGGAGAGGTTTTCTATAGAGGAAGGTATGCTACCTGAGAGATTGTTTTGGGATAAGCTGAGATACCACAGTGGTGAGGAGATATTTGAGATTGGTGGGATAGACCCAACAAAGTTATTAACTGCAAGGCTTATGAGATTAAGTGACGAGCTATTAAAAAGAGCAAAAGGAATCTCGCCGCCAAGACGATTATTAGTTAAATCAAGCAATATGAGTGATGAACTATTAGCTAGGAGAGGTGGGATGCCTCCAGTGAGGCTGTTATTTGTGAGAATGACCACATTCAGAAAAGAGTTACTTCCAAGTGAGAAAGGAATATTGCCGCTTAGGTTGTTATTTGAAAGATATAAAACTGAAAGGTTGGAGAGTGTACCTAATCCTTCTGGGATTACTCCTTGAAGTTTATTGTCAAACAAGCAGATAGCTTGAAGATTTGAGCATTTGTTCATGCTTGAGGGGATCTCACCATCAATCGAGTTATTTGAGATATCAATGATCTGAAGGTTAGAGCATGAAGACAGAGCCTCTGGTATCGTGCCAGTGAGGCCATTAGAGGTGAGGTTCAGGTAGGTGAGGCGACGCAAATGACCAATTTCAGGTGGAATGTTGCCAGTCAACTGATTAAATGGAAGGTGGATTATTGTCAAGAAAGTAAGATTACCAATGCAAGGTGGTATTTGGCCATGGAGGTTGGATGACTCTAGGTTCAATTCAGTGACTCGAGATGTGTGGCTCTTGCTACAAGTGACACCGGGCCATTGACAGTATTGCGAAGAATCATTTCTCCAGGAAGCCATGACTCCGGCATTGTCATTGAGATGGAGCTTGAGGCAAAGCAGAGCCTGAAAATCGGTAGTATCTGATGCATCATGGAGTGGTGCAGTGGGAACTAGGGAGAATGCAGTGATGAGAAAGAATGAGAAGCATGCCAATAAGATTGTGACCAGAACAGGGATGCTGTGGGAGCCCAAAGGCGCCAT
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| CDS seq | ATGGCGCCTTTGGGCTCCCACAGCATCCCTGTTCTGGTCACAATCTTATTGGCATGCTTCTCATTCTTTCTCATCACTGCATTCTCCCTAGTTCCCACTGCACCACTCCATGATGCATCAGATACTACCGATTTTCAGGCTCTGCTTTGCCTCAAGCTCCATCTCAATGACAATGCCGGAGTCATGGCTTCCTGGAGAAATGATTCTTCGCAATACTGTCAATGGCCCGGTGTCACTTGTAGCAAGAGCCACACATCTCGAGTCACTGAATTGAACCTAGAGTCATCCAACCTCCATGGCCAAATACCACCTTGCATTGGTAATCTTACTTTCTTGACAATAATCCACCTTCCATTTAATCAGTTGACTGGCAACATTCCACCTGAAATTGGTCATTTGCGTCGCCTCACCTACCTGAACCTCACCTCTAATGGCCTCACTGGCACGATACCAGAGGCTCTGTCTTCATGCTCTAACCTTCAGATCATTGATATCTCAAATAACTCGATTGATGGTGAGATCCCCTCAAGCATGAACAAATGCTCAAATCTTCAAGCTATCTGCTTGTTTGACAATAAACTTCAAGGAGTAATCCCAGAAGGATTAGGTACACTCTCCAACCTTTCAGTTTTATATCTTTCAAATAACAACCTAAGCGGCAATATTCCTTTCTCACTTGGAAGTAACTCTTTTCTGAATGTGGTCATTCTCACAAATAACAGCCTCACTGGAGGCATCCCACCTCTCCTAGCTAATAGTTCATCACTCATATTGCTTGATTTAACTAATAATCGTCTTGGCGGCGAGATTCCTTTTGCTCTTTTTAATAGCTCGTCACTTAATCTCATAAGCCTTGCAGTTAATAACTTTGTTGGGTCTATCCCACCAATCTCAAATATCTCCTCACCACTGTGGTATCTCAGCTTATCCCAAAACAATCTCTCAGGTAGCATACCTTCCTCTATAGAAAACCTCTCCTCCCTTGAAATACTCTACCTTTCACAGAACAACTTCCAGGGAACCATTCCATCTAGTTTAAGCAGAATACCAAACTTGCAAGAACTGGACTTGACATATAACAACTTGTCAGGGACAGTTCCGGCTTCTCTGTACAACATGTCTAATCTCGTATACCTTGGCATGGGCACTAATAAACTCATTGGAGAAATTCCAGATAACATAGGATATACCCTTCCAAATATCAAAACACTGATCTTGCAAGGAAATCAATTCCAAGGGCAGATCCCCACTTCACTAGGCATTGCAAAAAATCTCCAAGTGATTAATCTTCGTGACAATGCATTCCATGGTATTATTCCTTCTTTTGGGAACCTGCCTGACTTGATGGAATTGAATCTCGGGATGAATCGACTAGAAGCTGGAGACTGGTCTTTCTTATCCTCATTGATAACTAGTAGACAGTTGGTTCAATTATGCCTGGACAAAAACATCCTCAAAGGAACCCTACCAAGTTCCATCGCAAAACTTTCAACAAGCTTACAGGTGTTGCTGCTAACAGGAAATGAAATATCCGGTACCATACCTCAAGAGATAGAGAAACTCACAAGCCTTACGCTTCTTTATATGGAAAAAAATCTACTTACTGGAAATCTTCCAGATTCACTTGGAAATCTGCTAAACTTGTTTATCCTAAGCTTATCCCAAAACAAAATTTCAGGACAAATTCCAACTTCATTTGGTAATCTAAGTCATCTAAGTGAGCTCTACTTACAGGAAAATAATTTGAGTGGACCGATTCCTAGCTCCTTAGGGAGTTGCAAGAATCTAGAAGCTTTAAACCTGTCTTGTAACAGCTTTGATAGTAGCATACCAGAGGAACTCGTTACTCTTTCCTCTCTTTCTGAATGGTTGGACTTGTCTCACAACCAACTCGATGGAGAAATACCATCAGAGATTGGTGGCTCGATCAATCTTGATATTCTAAATATTTCCAATAACCGACTGTCAGGACAAATTCCCTCTGCTCTTGGCGACTGTGTCCACTTAAGCTCTCTCCGTATGGAAGGGAACCTTCTTGATGGACGAATTCCTGATTCTTTCATAAATTTAAGAGGCATTGTTGAGTTAGATCTTTCTCAGAACAATCTATCTGGTAAAATACCTGAATTCATGGAATCCTTTGGGTCCATGAAGCTTCTCAATTTGTCCTTCAATGATTTTGAAGGACAGGTACCAACTGAAGGGATATTTCAGAATGCAAGTGAGGTTTTTATCCAAGGGAACAAGAAGTTATGTGGTACATATCCATTGCTACAGTTACCACTCTGCAATGTAAAGCCATCAAAGGGAAAGCACACCAATAAAATACTTAAGATAGTAGGACCTATAGCTATTTGTCTGGCTCTAACATCATGTTTAGCGCTCATTCTACTGAAGAAGAGGAATAAAGTCAAGCAAGCATCTGATCCTTCCTGTAAGGAGTTGAAGACGTTTACATATTCAACATTGAAGAAGATACCGAGAATAATTGTGACCCTGAAAATCATGTCATGA
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| Protein seq | MAPLGSHSIPVLVTILLACFSFFLITAFSLVPTAPLHDASDTTDFQALLCLKLHLNDNAGVMASWRNDSSQYCQWPGVTCSKSHTSRVTELNLESSNLHGQIPPCIGNLTFLTIIHLPFNQLTGNIPPEIGHLRRLTYLNLTSNGLTGTIPEALSSCSNLQIIDISNNSIDGEIPSSMNKCSNLQAICLFDNKLQGVIPEGLGTLSNLSVLYLSNNNLSGNIPFSLGSNSFLNVVILTNNSLTGGIPPLLANSSSLILLDLTNNRLGGEIPFALFNSSSLNLISLAVNNFVGSIPPISNISSPLWYLSLSQNNLSGSIPSSIENLSSLEILYLSQNNFQGTIPSSLSRIPNLQELDLTYNNLSGTVPASLYNMSNLVYLGMGTNKLIGEIPDNIGYTLPNIKTLILQGNQFQGQIPTSLGIAKNLQVINLRDNAFHGIIPSFGNLPDLMELNLGMNRLEAGDWSFLSSLITSRQLVQLCLDKNILKGTLPSSIAKLSTSLQVLLLTGNEISGTIPQEIEKLTSLTLLYMEKNLLTGNLPDSLGNLLNLFILSLSQNKISGQIPTSFGNLSHLSELYLQENNLSGPIPSSLGSCKNLEALNLSCNSFDSSIPEELVTLSSLSEWLDLSHNQLDGEIPSEIGGSINLDILNISNNRLSGQIPSALGDCVHLSSLRMEGNLLDGRIPDSFINLRGIVELDLSQNNLSGKIPEFMESFGSMKLLNLSFNDFEGQVPTEGIFQNASEVFIQGNKKLCGTYPLLQLPLCNVKPSKGKHTNKILKIVGPIAICLALTSCLALILLKKRNKVKQASDPSCKELKTFTYSTLKKIPRIIVTLKIMS |
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| Function | Probable LRR receptor-like serine/threonine-protein kinase At3g47570 [UniProtKB/Swiss-Prot:C0LGP4] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os06g38830 | LOC_Os06g38830.1 | Chr06 | 23049803 | 23052316 | - | MSU_osa1r7 | ||
| CDS seq | ATGGCGCCTTTGGGCTCCCACAGCATCCCTGTTCTGGTCACAATCTTATTGGCATGCTTCTCATTCTTTCTCATCACTGCATTCTCCCTAGTTCCCACTGCACCACTCCATGATGCATCAGATACTACCGATTTTCAGGCTCTGCTTTGCCTCAAGCTCCATCTCAATGACAATGCCGGAGTCATGGCTTCCTGGAGAAATGATTCTTCGCAATACTGTCAATGGCCCGGTGTCACTTGTAGCAAGAGCCACACATCTCGAGTCACTGAATTGAACCTAGAGTCATCCAACCTCCATGGCCAAATACCACCTTGCATTGGTAATCTTACTTTCTTGACAATAATCCACCTTCCATTTAATCAGTTGACTGGCAACATTCCACCTGAAATTGGTCATTTGCGTCGCCTCACCTACCTGAACCTCACCTCTAATGGCCTCACTGGCACGATACCAGAGGCTCTGTCTTCATGCTCTAACCTTCAGATCATTGATATCTCAAATAACTCGATTGATGGTGAGATCCCCTCAAGCATGAACAAATGCTCAAATCTTCAAGCTATCTGCTTGTTTGACAATAAACTTCAAGGAGTAATCCCAGAAGGATTAGGTACACTCTCCAACCTTTCAGTTTTATATCTTTCAAATAACAACCTAAGCGGCAATATTCCTTTCTCACTTGGAAGTAACTCTTTTCTGAATGTGGTCATTCTCACAAATAACAGCCTCACTGGAGGCATCCCACCTCTCCTAGCTAATAGTTCATCACTCATATTGCTTGATTTAACTAATAATCGTCTTGGCGGCGAGATTCCTTTTGCTCTTTTTAATAGCTCGTCACTTAATCTCATAAGCCTTGCAGTTAATAACTTTGTTGGGTCTATCCCACCAATCTCAAATATCTCCTCACCACTGTGGTATCTCAGCTTATCCCAAAACAATCTCTCAGGTAGCATACCTTCCTCTATAGAAAACCTCTCCTCCCTTGAAATACTCTACCTTTCACAGAACAACTTCCAGGGAACCATTCCATCTAGTTTAAGCAGAATACCAAACTTGCAAGAACTGGACTTGACATATAACAACTTGTCAGGGACAGTTCCGGCTTCTCTGTACAACATGTCTAATCTCGTATACCTTGGCATGGGCACTAATAAACTCATTGGAGAAATTCCAGATAACATAGGATATACCCTTCCAAATATCAAAACACTGATCTTGCAAGGAAATCAATTCCAAGGGCAGATCCCCACTTCACTAGGCATTGCAAAAAATCTCCAAGTGATTAATCTTCGTGACAATGCATTCCATGGTATTATTCCTTCTTTTGGGAACCTGCCTGACTTGATGGAATTGAATCTCGGGATGAATCGACTAGAAGCTGGAGACTGGTCTTTCTTATCCTCATTGATAACTAGTAGACAGTTGGTTCAATTATGCCTGGACAAAAACATCCTCAAAGGAACCCTACCAAGTTCCATCGCAAAACTTTCAACAAGCTTACAGGTGTTGCTGCTAACAGGAAATGAAATATCCGGTACCATACCTCAAGAGATAGAGAAACTCACAAGCCTTACGCTTCTTTATATGGAAAAAAATCTACTTACTGGAAATCTTCCAGATTCACTTGGAAATCTGCTAAACTTGTTTATCCTAAGCTTATCCCAAAACAAAATTTCAGGACAAATTCCAACTTCATTTGGTAATCTAAGTCATCTAAGTGAGCTCTACTTACAGGAAAATAATTTGAGTGGACCGATTCCTAGCTCCTTAGGGAGTTGCAAGAATCTAGAAGCTTTAAACCTGTCTTGTAACAGCTTTGATAGTAGCATACCAGAGGAACTCGTTACTCTTTCCTCTCTTTCTGAATGGTTGGACTTGTCTCACAACCAACTCGATGGAGAAATACCATCAGAGATTGGTGGCTCGATCAATCTTGATATTCTAAATATTTCCAATAACCGACTGTCAGGACAAATTCCCTCTGCTCTTGGCGACTGTGTCCACTTAAGCTCTCTCCGTATGGAAGGGAACCTTCTTGATGGACGAATTCCTGATTCTTTCATAAATTTAAGAGGCATTGTTGAGTTAGATCTTTCTCAGAACAATCTATCTGGTAAAATACCTGAATTCATGGAATCCTTTGGGTCCATGAAGCTTCTCAATTTGTCCTTCAATGATTTTGAAGGACAGGTACCAACTGAAGGGATATTTCAGAATGCAAGTGAGGTTTTTATCCAAGGGAACAAGAAGTTATGTGGTACATATCCATTGCTACAGTTACCACTCTGCAATGTAAAGCCATCAAAGGGAAAGCACACCAATAAAATACTTAAGATAGTAGGACCTATAGCTATTTGTCTGGCTCTAACATCATGTTTAGCGCTCATTCTACTGAAGAAGAGGAATAAAGTCAAGCAAGCATCTGATCCTTCCTGTAAGGAGTTGAAGACGTTTACATATTCAACATTGAAGAAGATACCGAGAATAATTGTGACCCTGAAAATCATGTCATGA
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| Protein seq | MAPLGSHSIPVLVTILLACFSFFLITAFSLVPTAPLHDASDTTDFQALLCLKLHLNDNAGVMASWRNDSSQYCQWPGVTCSKSHTSRVTELNLESSNLHGQIPPCIGNLTFLTIIHLPFNQLTGNIPPEIGHLRRLTYLNLTSNGLTGTIPEALSSCSNLQIIDISNNSIDGEIPSSMNKCSNLQAICLFDNKLQGVIPEGLGTLSNLSVLYLSNNNLSGNIPFSLGSNSFLNVVILTNNSLTGGIPPLLANSSSLILLDLTNNRLGGEIPFALFNSSSLNLISLAVNNFVGSIPPISNISSPLWYLSLSQNNLSGSIPSSIENLSSLEILYLSQNNFQGTIPSSLSRIPNLQELDLTYNNLSGTVPASLYNMSNLVYLGMGTNKLIGEIPDNIGYTLPNIKTLILQGNQFQGQIPTSLGIAKNLQVINLRDNAFHGIIPSFGNLPDLMELNLGMNRLEAGDWSFLSSLITSRQLVQLCLDKNILKGTLPSSIAKLSTSLQVLLLTGNEISGTIPQEIEKLTSLTLLYMEKNLLTGNLPDSLGNLLNLFILSLSQNKISGQIPTSFGNLSHLSELYLQENNLSGPIPSSLGSCKNLEALNLSCNSFDSSIPEELVTLSSLSEWLDLSHNQLDGEIPSEIGGSINLDILNISNNRLSGQIPSALGDCVHLSSLRMEGNLLDGRIPDSFINLRGIVELDLSQNNLSGKIPEFMESFGSMKLLNLSFNDFEGQVPTEGIFQNASEVFIQGNKKLCGTYPLLQLPLCNVKPSKGKHTNKILKIVGPIAICLALTSCLALILLKKRNKVKQASDPSCKELKTFTYSTLKKIPRIIVTLKIMS
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.260518 | 0.066984 | 0.061100 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_06g0587900 | RBH | 0.422553 | 0.000000 | 0.260348 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g38760 | SBH | 0.0 | 0.0 | 0.084983 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os06g0587900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0020880 | RBH | 0.0 | 0.763936 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0020720 | RBH | 0.000000 | 0.313071 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0020820 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0020330 | RBH | 0.041708 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0020980 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0366000 | RBH | 0.3113895 | 0.4256115 | 0.166195 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0020420 | RBH | 0.0 | 0.162646 | 0.125249 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0343100 | RBH | 0.4664375 | 0.2077655 | 0.132618 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0020600 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0020640 | RBH | 0.000000 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0020250 | RBH | 0.0 | 4.595518 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0020970 | RBH | 0.097232 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0020400 | RBH | 0.034371 | 0.504609 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G020310 | RBH | 0.000000 | 0.0 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0020560 | RBH | 0.0 | 0.0 | 0.674161 |
