Basic Info

Gene ID OGI # | Score   Accession | Assembly | Annotation Location Links
OsCMeo_06g0020520 OGI:06063330 | 14/16 CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) Chr06:22494773-22498349
Gene Symbol -
DNA seq

ttaaccttgcagctccaaaaatgcttctttgattgcaacaacttcagcataaacctcttgcattactggtcgatcttttggtatctctacggagcatgagagaccaagtttagccagttgcgtgatgcagctcaaaattctgactgttgcatggttatggtgttcgtgttctaaatttggaatgatcttaggatctataatcttgccaatgttatgaggaaatgccttatccacaaatatgtgaaggctcaagccatcattaaacatgccatcagttggacgcttcccagtgagcatttctaggataataattccatagctatatacatcgccctctgtagagattttgcttccaaaaccatattctgtaatattatataaaagtattcaaaagattgaccacctcataccattgaaatattaaaacaaaaaggatctaatgaataaaaaaagtgaattacgaattaatataaacaaacagaagacattactaacatcgtactttttctatactaacgaaaatattacctggtgcaatgtatccaattgatcctcttggtcctactaagctcgtagaactgttactcatactgtaactgtgaagaaacttacttaacccaaagtcgccaagacgtgcacccatggcatcatctacaagtacattgctgggctttaaatcacaatggactataggtggtacgcaatggttatgtagataatccagggcagcagctatgtccgctgcaattgttattctagaggacaaactcaattgtatattcaatccatacgtgatctggttcagatggagccagttctcaaggttaccattaggaatatattcaagaataagagctttgaactcatgtcctattggatcaaatgttgagcatgcagtaatcacccttacaagattacgatgacgagtgttcctcaatgcctcacactcagcaaggaagctctttggtcctccatgttgatcaagtttgaaaactttgatagcgacaacttgtttttcaaactcaaatgtacctctgtacactgatccgtatttccctgaaccaaccgtattggctgaagagaatccatttgttgctttgtctaaatcagcatatgagaaattcttcccattattgctggattgatgaacttcctgtttgaatttctttctctttttcagaagaatgagtgcaaagcaagataacaagaccaaaggaagagcagtaaatactaccgtcttcacaatgttggagttgtgtctttgtttagatatctttgtattgcaaagtgtcacctgtagcaatgtggtgctggcacataacttctgattcccttgaatgaacacctcgcttgcattctgaaatatcccacctgtcggtacttgtccttcaagattgttgaaggacaaatttagaagcctcagattgatgaaggaatcaaagaagtggggaatttcaccagataaattgttttgtgaaagatccaggacaatggttcctcttaaattattgaaagaatcagggattttgccatcaagaaggttcccttccatgtgaagggtctccaaatggacacaatcgcctatactagaggggatttgtccagataactggttattggaaatatcaagggggccgaggttgatcaggccaccaatctccagtggaatttttccagatagtttgttgtgggacaggtccagaccttcagaaagggaggaaagagtaaagatctctgttggtatgctaccgttaaagctgttgtgtgagagattcaacatccctaaatttttgcaacgtcctaatgcttcttggattggaccactcaaaaaattttcttgtaaatagagctcacttaattgattgagattaccaattgagcgtgggatttgcccagaaagtttgttctgggataagcttaggacaaacaactcttgaagatttccaagtgaaataggaagatttccagtaaggaaattcttttccatgtaaagaagcgagagatttgtgagatgtcctatttcttttggtatggtgccagatattttatttcctgttaaaattagttcctctaagtttttggaaaggcttccaatgttacttggcagtgttcctccaagaatgtttaaacccaaattcaatctcactaattgtgtgcaatttgtcaatgacgataagaaagaccaatctccagcttcaagccgattcattcctagattcaattctgttaagttaggtagggtcccaaaagaaggaacagctccctggaatgcgttgtcccggagattaatcaccttaagatttgttccatttgctagtgaaatggggatttgaccttggaattggtttgtttgcataatcaaagtttggatacttggaagggtatatccaatgctgtaaggaattttcccagtgagattgttcttgcccatgctaaggtatgtgagttctgacatgttataaagagatgcggggacagtcgctgacagaaagttgtaagtcatgtctaatatttgcaggtttggaattgtacctatactcatgggaatgctgccttcaaaattattatctgcaagcaagagccatagaagtgaagagaaattccctatatttgaaggtattgtgcctgcaagatcatttgactgcacgagaagatattgcaaaggtgagtcaatatttgttaaaataggtaatgaccccacaaagttgttccttccaagggataatatttgaagttttgtgctattaaacagggcaggaggaatctctccactgaaatggttgttcgttaagctcaacacttgaagtgatgaactgtttgccaggagagatggaataggtcctgttaggctattgttcaccagaatcacagacacaagtgaaggactactgcctagtgaaaacggaatgttgcctgtcagactgtttccatttagatgtaaaactgaaaggttgcggagcatcccaagcccttcaggtattcctccggtgagcatgttatgacccaagtcgagcacttgaagatttgaaaacttcccgaggttttggggaatctcaccttggaggttgttgcttctgagatccatggtttgaagctgatagcaggaagctagagagtctgggatcttgcctgtcagtttgtttgagctgagattaaggtactgcagtttatttagttgcccaagttcacgtgggatctcgccgctcagctgattatttgggaggtgtattcttgtgaggaaagtgagattggcgatgcaaggtggaatttgcccatttaggccgaatgactcaaggctcagtgcaacaacacgagatgaatgtctcttgctgcaagtgacaccagaccaactgcagaattggtatgagtcattcttccatgaggctaggattccatcagtgttcgtgagatggagcctaaggcaaataagtgtctggaattcgatgtttggttcatcgttgagagttgttgcacctaatggggatgcaaagaatgataagagacaagagaggacaacaaccaagggcaggaaacaactgatagttcccacgagacacctaaattttctatctgacat

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CDS seq

atgtcagatagaaaatttaggtgtctcgtgggaactatcagttgtttcctgcccttggttgttgtcctctcttgtctcttatcattctttgcatccccattaggtgcaacaactctcaacgatgaaccaaacatcgaattccagacacttatttgccttaggctccatctcacgaacactgatggaatcctagcctcatggaagaatgactcataccaattctgcagttggtctggtgtcacttgcagcaagagacattcatctcgtgttgttgcactgagccttgagtcattcggcctaaatgggcaaattccaccttgcatcgccaatctcactttcctcacaagaatacacctcccaaataatcagctgagcggcgagatcccacgtgaacttgggcaactaaataaactgcagtaccttaatctcagctcaaacaaactgacaggcaagatcccagactctctagcttcctgctatcagcttcaaaccatggatctcagaagcaacaacctccaaggtgagattccccaaaacctcgggaagttttcaaatcttcaagtgctcgacttgggtcataacatgctcaccggaggaatacctgaagggcttgggatgctccgcaacctttcagttttacatctaaatggaaacagtctgacaggcaacattccgttttcactaggcagtagtccttcacttgtgtctgtgattctggtgaacaatagcctaacaggacctattccatctctcctggcaaacagttcatcacttcaagtgttgagcttaacgaacaaccatttcagtggagagattcctcctgccctgtttaatagcacaaaacttcaaatattatcccttggaaggaacaactttgtggggtcattacctattttaacaaatattgactcacctttgcaatatcttctcgtgcagtcaaatgatcttgcaggcacaataccttcaaatatagggaatttctcttcacttctatggctcttgcttgcagataataattttgaaggcagcattcccatgagtataggtacaattccaaacctgcaaatattagacatgacttacaactttctgtcagcgactgtccccgcatctctttataacatgtcagaactcacataccttagcatgggcaagaacaatctcactgggaaaattccttacagcattggatatacccttccaagtatccaaactttgattatgcaaacaaaccaattccaaggtcaaatccccatttcactagcaaatggaacaaatcttaaggtgattaatctccgggacaacgcattccagggagctgttccttcttttgggaccctacctaacttaacagaattgaatctaggaatgaatcggcttgaagctggagattggtctttcttatcgtcattgacaaattgcacacaattagtgagattgaatttgggtttaaacattcttggaggaacactgccaagtaacattggaagcctttccaaaaacttagaggaactaattttaacaggaaataaaatatctggcaccataccaaaagaaataggacatctcacaaatctctcgcttctttacatggaaaagaatttccttactggaaatcttcctatttcacttggaaatcttcaagagttgtttgtcctaagcttatcccagaacaaactttctgggcaaatcccacgctcaattggtaatctcaatcaattaagtgagctctatttacaagaaaattttttgagtggtccaatccaagaagcattaggacgttgcaaaaatttagggatgttgaatctctcacacaacagctttaacggtagcataccaacagagatctttactctttcctccctttctgaaggtctggacctgtcccacaacaaactatctggaaaaattccactggagattggtggcctgatcaacctcggcccccttgatatttccaataaccagttatctggacaaatcccctctagtataggcgattgtgtccatttggagacccttcacatggaagggaaccttcttgatggcaaaatccctgattctttcaataatttaagaggaaccattgtcctggatctttcacaaaacaatttatctggtgaaattccccacttctttgattccttcatcaatctgaggcttctaaatttgtccttcaacaatcttgaaggacaagtaccgacaggtgggatatttcagaatgcaagcgaggtgttcattcaagggaatcagaagttatgtgccagcaccacattgctacaggtgacactttgcaatacaaagatatctaaacaaagacacaactccaacattgtgaagacggtagtatttactgctcttcctttggtcttgttatcttgctttgcactcattcttctgaaaaagagaaagaaattcaaacaggaagttcatcaatccagcaataatgggaagaatttctcatatgctgatttagacaaagcaacaaatggattctcttcagccaatacggttggttcagggaaatacggatcagtgtacagaggtacatttgagtttgaaaaacaagttgtcgctatcaaagttttcaaacttgatcaacatggaggaccaaagagcttccttgctgagtgtgaggcattgaggaacactcgtcatcgtaatcttgtaagggtgattactgcatgctcaacatttgatccaataggacatgagttcaaagctcttattcttgaatatattcctaatggtaaccttgagaactggctccatctgaaccagatcacgtatggattgaatatacaattgagtttgtcctctagaataacaattgcagcggacatagctgctgccctggattatctacataaccattgcgtaccacctatagtccattgtgatttaaagcccagcaatgtacttgtagatgatgccatgggtgcacgtcttggcgactttgggttaagtaagtttcttcacagttacagtatgagtaacagttctacgagcttagtaggaccaagaggatcaattggatacattgcaccagaatatggttttggaagcaaaatctctacagagggcgatgtatatagctatggaattattatcctagaaatgctcactgggaagcgtccaactgatggcatgtttaatgatggcttgagccttcacatatttgtggataaggcatttcctcataacattggcaagattatagatcctaagatcattccaaatttagaacacgaacaccataaccatgcaacagtcagaattttgagctgcatcacgcaactggctaaacttggtctctcatgctccgtagagataccaaaagatcgaccagtaatgcaagaggtttatgctgaagttgttgcaatcaaagaagcatttttggagctgcaaggttaa

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Protein seq

MSDRKFRCLVGTISCFLPLVVVLSCLLSFFASPLGATTLNDEPNIEFQTLICLRLHLTNTDGILASWKNDSYQFCSWSGVTCSKRHSSRVVALSLESFGLNGQIPPCIANLTFLTRIHLPNNQLSGEIPRELGQLNKLQYLNLSSNKLTGKIPDSLASCYQLQTMDLRSNNLQGEIPQNLGKFSNLQVLDLGHNMLTGGIPEGLGMLRNLSVLHLNGNSLTGNIPFSLGSSPSLVSVILVNNSLTGPIPSLLANSSSLQVLSLTNNHFSGEIPPALFNSTKLQILSLGRNNFVGSLPILTNIDSPLQYLLVQSNDLAGTIPSNIGNFSSLLWLLLADNNFEGSIPMSIGTIPNLQILDMTYNFLSATVPASLYNMSELTYLSMGKNNLTGKIPYSIGYTLPSIQTLIMQTNQFQGQIPISLANGTNLKVINLRDNAFQGAVPSFGTLPNLTELNLGMNRLEAGDWSFLSSLTNCTQLVRLNLGLNILGGTLPSNIGSLSKNLEELILTGNKISGTIPKEIGHLTNLSLLYMEKNFLTGNLPISLGNLQELFVLSLSQNKLSGQIPRSIGNLNQLSELYLQENFLSGPIQEALGRCKNLGMLNLSHNSFNGSIPTEIFTLSSLSEGLDLSHNKLSGKIPLEIGGLINLGPLDISNNQLSGQIPSSIGDCVHLETLHMEGNLLDGKIPDSFNNLRGTIVLDLSQNNLSGEIPHFFDSFINLRLLNLSFNNLEGQVPTGGIFQNASEVFIQGNQKLCASTTLLQVTLCNTKISKQRHNSNIVKTVVFTALPLVLLSCFALILLKKRKKFKQEVHQSSNNGKNFSYADLDKATNGFSSANTVGSGKYGSVYRGTFEFEKQVVAIKVFKLDQHGGPKSFLAECEALRNTRHRNLVRVITACSTFDPIGHEFKALILEYIPNGNLENWLHLNQITYGLNIQLSLSSRITIAADIAAALDYLHNHCVPPIVHCDLKPSNVLVDDAMGARLGDFGLSKFLHSYSMSNSSTSLVGPRGSIGYIAPEYGFGSKISTEGDVYSYGIIILEMLTGKRPTDGMFNDGLSLHIFVDKAFPHNIGKIIDPKIIPNLEHEHHNHATVRILSCITQLAKLGLSCSVEIPKDRPVMQEVYAEVVAIKEAFLELQG

Function Probable LRR receptor-like serine/threonine-protein kinase At3g47570 [UniProtKB/Swiss-Prot:C0LGP4]

Transcripts

Gene Transcript Chromosome Start End Strand Source
OsCMeo_06g0020520 OsCMeo_06g0020520.01 Chr06 22494773 22498349 - NAM
CDS seq

atgtcagatagaaaatttaggtgtctcgtgggaactatcagttgtttcctgcccttggttgttgtcctctcttgtctcttatcattctttgcatccccattaggtgcaacaactctcaacgatgaaccaaacatcgaattccagacacttatttgccttaggctccatctcacgaacactgatggaatcctagcctcatggaagaatgactcataccaattctgcagttggtctggtgtcacttgcagcaagagacattcatctcgtgttgttgcactgagccttgagtcattcggcctaaatgggcaaattccaccttgcatcgccaatctcactttcctcacaagaatacacctcccaaataatcagctgagcggcgagatcccacgtgaacttgggcaactaaataaactgcagtaccttaatctcagctcaaacaaactgacaggcaagatcccagactctctagcttcctgctatcagcttcaaaccatggatctcagaagcaacaacctccaaggtgagattccccaaaacctcgggaagttttcaaatcttcaagtgctcgacttgggtcataacatgctcaccggaggaatacctgaagggcttgggatgctccgcaacctttcagttttacatctaaatggaaacagtctgacaggcaacattccgttttcactaggcagtagtccttcacttgtgtctgtgattctggtgaacaatagcctaacaggacctattccatctctcctggcaaacagttcatcacttcaagtgttgagcttaacgaacaaccatttcagtggagagattcctcctgccctgtttaatagcacaaaacttcaaatattatcccttggaaggaacaactttgtggggtcattacctattttaacaaatattgactcacctttgcaatatcttctcgtgcagtcaaatgatcttgcaggcacaataccttcaaatatagggaatttctcttcacttctatggctcttgcttgcagataataattttgaaggcagcattcccatgagtataggtacaattccaaacctgcaaatattagacatgacttacaactttctgtcagcgactgtccccgcatctctttataacatgtcagaactcacataccttagcatgggcaagaacaatctcactgggaaaattccttacagcattggatatacccttccaagtatccaaactttgattatgcaaacaaaccaattccaaggtcaaatccccatttcactagcaaatggaacaaatcttaaggtgattaatctccgggacaacgcattccagggagctgttccttcttttgggaccctacctaacttaacagaattgaatctaggaatgaatcggcttgaagctggagattggtctttcttatcgtcattgacaaattgcacacaattagtgagattgaatttgggtttaaacattcttggaggaacactgccaagtaacattggaagcctttccaaaaacttagaggaactaattttaacaggaaataaaatatctggcaccataccaaaagaaataggacatctcacaaatctctcgcttctttacatggaaaagaatttccttactggaaatcttcctatttcacttggaaatcttcaagagttgtttgtcctaagcttatcccagaacaaactttctgggcaaatcccacgctcaattggtaatctcaatcaattaagtgagctctatttacaagaaaattttttgagtggtccaatccaagaagcattaggacgttgcaaaaatttagggatgttgaatctctcacacaacagctttaacggtagcataccaacagagatctttactctttcctccctttctgaaggtctggacctgtcccacaacaaactatctggaaaaattccactggagattggtggcctgatcaacctcggcccccttgatatttccaataaccagttatctggacaaatcccctctagtataggcgattgtgtccatttggagacccttcacatggaagggaaccttcttgatggcaaaatccctgattctttcaataatttaagaggaaccattgtcctggatctttcacaaaacaatttatctggtgaaattccccacttctttgattccttcatcaatctgaggcttctaaatttgtccttcaacaatcttgaaggacaagtaccgacaggtgggatatttcagaatgcaagcgaggtgttcattcaagggaatcagaagttatgtgccagcaccacattgctacaggtgacactttgcaatacaaagatatctaaacaaagacacaactccaacattgtgaagacggtagtatttactgctcttcctttggtcttgttatcttgctttgcactcattcttctgaaaaagagaaagaaattcaaacaggaagttcatcaatccagcaataatgggaagaatttctcatatgctgatttagacaaagcaacaaatggattctcttcagccaatacggttggttcagggaaatacggatcagtgtacagaggtacatttgagtttgaaaaacaagttgtcgctatcaaagttttcaaacttgatcaacatggaggaccaaagagcttccttgctgagtgtgaggcattgaggaacactcgtcatcgtaatcttgtaagggtgattactgcatgctcaacatttgatccaataggacatgagttcaaagctcttattcttgaatatattcctaatggtaaccttgagaactggctccatctgaaccagatcacgtatggattgaatatacaattgagtttgtcctctagaataacaattgcagcggacatagctgctgccctggattatctacataaccattgcgtaccacctatagtccattgtgatttaaagcccagcaatgtacttgtagatgatgccatgggtgcacgtcttggcgactttgggttaagtaagtttcttcacagttacagtatgagtaacagttctacgagcttagtaggaccaagaggatcaattggatacattgcaccagaatatggttttggaagcaaaatctctacagagggcgatgtatatagctatggaattattatcctagaaatgctcactgggaagcgtccaactgatggcatgtttaatgatggcttgagccttcacatatttgtggataaggcatttcctcataacattggcaagattatagatcctaagatcattccaaatttagaacacgaacaccataaccatgcaacagtcagaattttgagctgcatcacgcaactggctaaacttggtctctcatgctccgtagagataccaaaagatcgaccagtaatgcaagaggtttatgctgaagttgttgcaatcaaagaagcatttttggagctgcaaggttaa

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Protein seq

MSDRKFRCLVGTISCFLPLVVVLSCLLSFFASPLGATTLNDEPNIEFQTLICLRLHLTNTDGILASWKNDSYQFCSWSGVTCSKRHSSRVVALSLESFGLNGQIPPCIANLTFLTRIHLPNNQLSGEIPRELGQLNKLQYLNLSSNKLTGKIPDSLASCYQLQTMDLRSNNLQGEIPQNLGKFSNLQVLDLGHNMLTGGIPEGLGMLRNLSVLHLNGNSLTGNIPFSLGSSPSLVSVILVNNSLTGPIPSLLANSSSLQVLSLTNNHFSGEIPPALFNSTKLQILSLGRNNFVGSLPILTNIDSPLQYLLVQSNDLAGTIPSNIGNFSSLLWLLLADNNFEGSIPMSIGTIPNLQILDMTYNFLSATVPASLYNMSELTYLSMGKNNLTGKIPYSIGYTLPSIQTLIMQTNQFQGQIPISLANGTNLKVINLRDNAFQGAVPSFGTLPNLTELNLGMNRLEAGDWSFLSSLTNCTQLVRLNLGLNILGGTLPSNIGSLSKNLEELILTGNKISGTIPKEIGHLTNLSLLYMEKNFLTGNLPISLGNLQELFVLSLSQNKLSGQIPRSIGNLNQLSELYLQENFLSGPIQEALGRCKNLGMLNLSHNSFNGSIPTEIFTLSSLSEGLDLSHNKLSGKIPLEIGGLINLGPLDISNNQLSGQIPSSIGDCVHLETLHMEGNLLDGKIPDSFNNLRGTIVLDLSQNNLSGEIPHFFDSFINLRLLNLSFNNLEGQVPTGGIFQNASEVFIQGNQKLCASTTLLQVTLCNTKISKQRHNSNIVKTVVFTALPLVLLSCFALILLKKRKKFKQEVHQSSNNGKNFSYADLDKATNGFSSANTVGSGKYGSVYRGTFEFEKQVVAIKVFKLDQHGGPKSFLAECEALRNTRHRNLVRVITACSTFDPIGHEFKALILEYIPNGNLENWLHLNQITYGLNIQLSLSSRITIAADIAAALDYLHNHCVPPIVHCDLKPSNVLVDDAMGARLGDFGLSKFLHSYSMSNSSTSLVGPRGSIGYIAPEYGFGSKISTEGDVYSYGIIILEMLTGKRPTDGMFNDGLSLHIFVDKAFPHNIGKIIDPKIIPNLEHEHHNHATVRILSCITQLAKLGLSCSVEIPKDRPVMQEVYAEVVAIKEAFLELQG

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Event Type Chromosome Start End Strand Alternative mRNAs Total mRNAs Source

Expression

Leaf Root Panicle
FPKM 0.0 1.293095 0.484840

Homologues

Genome & Annotation Homologs Type Expression(FPKM)
Leaf Root Panicle
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) OsNip_06g0581500 SBH 0.767197 0.973630 0.0
Nipponbare | IRGSP 1.0 | MSU LOC_Os06g38830 SBH 0.260518 0.066984 0.061100
Nipponbare | IRGSP 1.0 | RAP-db Os06g0581500 SBH None None None
Azucena | AzucenaRS1 | Gramene(+IsoSeq) OsAzu_06g0020610 RBH 0.000000 0.0 0.000000
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) OsKeNa_06g0020400 RBH 0.0 0.0 0.0
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) OsCMeo_06g0020560 SBH 0.551134 0.650744 0.193256
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) OsARC_06g0020270 SBH 0.0 0.0 None
PR 106 | Os127742RS1 | Gramene(+IsoSeq) OsPr106_06g0020700 RBH 0.0 0.0 0.888569
Minghui 63 | MH63RS3 | HZAU OsMH63_06G0361000 SBH 0.9463535 1.501984 0.4159195
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) OsIR64_06g0020110 RBH 0.081516 0.0 0.069260
Zhenshan 97 | ZS97RS3 | HZAU OsZS97_06G0343000 SBH 0.56284 0.471313 0.0964065
LIMA | Os127564RS1 | Gramene(+IsoSeq) OsLima_06g0020570 RBH 0.0 0.0 None
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) OsKYG_06g0020610 SBH 0.0 0.0 None
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) OsGoSa_06g0020220 RBH 0.0 0.0 None
LIU XU | Os125827RS1 | Gramene(+IsoSeq) OsLiXu_Ung0036870 RBH 0.0 0.0 0.0
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) OsLaMu_06g0020370 RBH 0.0 0.0 None
N22 | OsN22RS2 | Gramene(+IsoSeq) OsN22_06G020280 RBH 0.046913 0.0 0.000000
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) OsNaBo_06g0020520 RBH 0.0 1.110716 0.0
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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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