Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_12g0013840 | OGI:12051120 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr12:18578299-18584408 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atgcgggtggtgtggcgtgacgtgtggggtgcgcgggcgtagccgtgggcgtgtcacggcgctagacctccgcaggcttggcctaggaggcgccatcgtcgcccaatcgtccctgtccagcctcacctacctccggtggcttgacctctcccagaaccgcctgtgtggtggcgtccccacaccgctgccactctccctcgagtacctcaacctcagtcgtaacgcgctgcagggggcggtgtcctcagagcttgggtcgcttcgccgcctccgggtgctcgtcctcgacaccaacaacctcaccggcggcatcCCTGcctccctcggaaacctcacctccctcaccgatctcgccctcaccagcaaccacctcagcggccacatccccagtgccctcggcaacctccgtgccctcaccagcctctacttgaacgacaacatgctcgagggatccatacccctctcggtgttcaacctctcctctctgcagcattgtcaagccagagcattcgtcatcagactcgggcgcggaaggaaggatcaaatcaagtgggccgtcgactaccgctcggcccagacgggagaggcgcgacaacctgcgcgtgaaggggaaggattgggtccagtagcttctggctaagtctataaatagattacccttgtactgaaagaagtgaactgtatccccttctccaagtctgtatctgctctgttcttctctgttcttctctattccttccaaattccagattctaTCtctaaTTCttcttgctgagatctcggttcgtaacatcttggtatcagagctcgtttccatcctggagaagccaaggttccagacgcggctacagcttcaagtcgatgccatggagaaacaagcgggaggattcgagaagatgctcgagggaatccagaacgccatcggcgctgttgcggtgaagcaggatgaaacacaagcggtggtgctccagatggataaagcgatggctagctggcgacctcaagtggatgcagcagtcaagggacttcaatctgagatgggtgagctgaagaaacaagtggagattctggagaagcttcgtggcgagttgggcaattcgtcgaacatgttgcaggcaggcgccatctccacgcggaagcaaggcgacgacaacgatcaacgtccaccgctacttcccacgccggagtcgttcgttgcttcgacgtcggcgggagattctggctcaaatggccaCcgcgttgcaatcaacaaccaggggaaggcaacaggagtgattattcctcctgtgccacctccggtcacgggtacgactaattctccattttcccatcgctttgcttgtgattcattgcatcgggatgaagttgggggttctgaggatcgaggctataatcatcgggttccgaaattggattttccacagtttgatggggtagatccacaaaattggcgcatgagatgtgagcattactttggggtttatggtactcatccaatactttgggtcagggtggctaccatttactttactggaagagcagcctcatggttacgctcgtcgaaggctcatttgcggTtttctgagtggtcggatttttgcttagcagtggataggaaatttgatcgagataggcatcagatgttgattcgtcagatagagcagattaagcaaaccgggacggtggaggagttttatgagcgctttgatgatgttacgaatcaattgcttgcttttgatcctatgtacaatcagctcacgattgtgcataggttcactgaagggttgcgttttgacattcgtcatgctgttatgatgcaacgtcctcgcgacctagagactgctctggctattgcttgtttataggaggaatggacggagactcagaagcccaaggaatttcgtaaattgggtgatcatgttctgcggattaaaggagcttatcctcttccacttcctcctagcaaggtgtcggaatctagtgcaggggctggcaagtcttcatctgaacctgtcaagactactgctattgctgacagaatgcgagctctcaaggctcatcggcgagcccaaggtctctgttatctttgtgcagagaaatggtcaccatctcacaagtgttcaggttctgtgcagttgaatgctgtgcaggaggtgtttgctctactgcaacaaaatgacagtgattctggtgattcttctggagaggatactgagcctcattctctgttcttgtcagtccatgctattcagggtacaactactgctcaaactatgcgtttgcaagggattattcagggctatgatattctaattctagtagactctggcagttcctgcagtttcatcagttcgtcagtgatgcctcagttgtcgaacttgatacagttgcctgtttcttttcaagttaaggtggctaatggacaaatgttgtcttgtgaaactgaattggctaatgtttcttggtcagttcagggacatcatttttgttctgccttgaaggtgttaccacttcagagttatgatatgattttaggaatggattggttggagcgatacaaccctatggatattgactggcagcagaagacaattcggtttacattggatggccagttgattactttatgtggggtggttccatcagtatctgctaatcctgtcttatcggtactggagttacatcaattgtatcagtccggttctattgaaggtctagttcagttatacacccttgattctgagtctagttctgatttgccaattccggacaatattcagcaattgttacagagctttgcggatgtgtttcaagaaccacaaggacttcctcctgttcgggaatatgatcacactattccgttaattcctggtgcgcaaccagttaatgttcgccTttatcgttatacaccgttgcagaaggatgaaattgaacgccaagttgctgatatattggccagaggtatcatcaaacccagttcaagtcctttctcttctccggttcttttggtcaaaaagaaagatggttcttggcggttttgcgttgattatcgccatcttaatgcgattactgtcaaaaacaaatatcctttgcctataattgatgaactcttggatgaattagcgggcgcttgttggttctctaaattggatttgcgttccggctatcaccaaattcgcatgcatccggatgatgagcataagattgcctttaagacgcatcatgggcattttaagtttcttgtgcttccttttgggttgactagtgctccagcaacatttcagagtattatgaactcggttttagctccatatctgcgacgcagtgtattggtgtttgtcgatgacatccttgtttatagtcactctttggcagagcatgaagtgcatttgcgccaagttttgcaaatcttatctgataatcacttgaaggttaagcaatcgaaatgttcttttgctcagccccagttggcttatttgggtcatgtgattagtgccaatggggtagctactgatgaggacaaaattgtggctgttcggaattggattactcctacatcagtcaaagaattgcgcagttttctcgggttatcaggctattaccgcaagtttgtgcgcaattatgggattatttgtaaacctttgactaacttgttaaggaagggacagttgtttgtctggaCATcATCTGTTCATGAGGAGGCTTTTGTTACTCTGAAATATGCCTTGATCTCAGCTCCTGCTTTGGCCATGCCAGACTTTCAGAAACAATTTGTTGTCGAAACAGATGCATCTGACAAAGGAATTGGTGCTGTCTTAATACAGTCAGATCACCCTATTGCTTCACCCTATTGCTTTTCTCAGTAAAGCATTAGGACCTCGCACTCAGGGTCTCTCTACTTATGAGAAGGAAAGTTTGGCAATTATCTTGGCTGTGGAGCATTGGAGATCGTATTTGCAACATGATGAATTTGTAATACGGACTGACCACCGTAGTTTGGCCTTCTTAGATAATCAACGATTGTCCACCACTTGGCAACAGAAAGCTCTTACCAAGTTATTggggttgcgttatcgtattgtctataaaagggtttggaaaatggagctgctgatgcgttatctcgacaatctcctgttgatatggtggagatttcggcgctatctgtcagtattcctgcttggctgcaggaggtacctctgggatatgctaatgattctgacactcagcggattctcacttctctgcttaataatggaaagcatcatgcacattatgaattgcaatctaatatcctgtattttaagaaaaggatttggattggtaacaataaatctttgcaacagcaaattctggccaatttgcatactgcagctgtgggtggacactctggtaatttggctacttatcatcgagtgaagcaactttttgcttggccaggtttaaggcaatctgtgcacaattttgttcaggcttgtgatgtttgtcaacgagctaagtctgagcatatcaagttacctgggctattacaacctttggaagtacctgatcatgcttggcaagtaatttcaatggatttcattgagggtttaccgttatcagaccattgcaacgtcattttggtcattgtggacaaattttcgaagtttgctcactttttggctcttcgacatccttacacagctttgtctgtctcaactttttatggatcacatacattgcattcatggtctgcctcgtgccatcatttctgaccgagatcgggtatttactagcactttgtggaaggaattatttttaagagctggcactcaattgcgaatgagttcttcttatcatccgcagactgatggacaaacggagagagttaatcaatgtttagagacatttcttcgttgttttgtgcattcttgtcccaaacagtggaagcattggttaggaatggctcagttttggtacaactcttcttaccattcagccattgctatgactccttttgaagcattgtttggtcataaaccatcctatttcggattaactattactgccgttgatgctcctgtgagtttggcttcctggttgactgatctcaataacatgagtgctttgattcatcatcatttgctgcgggctcagcaacgcatgaaacatcaagcagatttacatcggtctgagcgtatcttcactgtgggtgattgggtgttccttaagctccaaccatatgtgcagcaatctgtcatgaccagagccaacaggaaattatccttcaaattttatggaccttttcaagtcttgcaacgagtgggcagtgtggcttacaagttggatttgccgtctacaagtatgatccatcctgtggtgcatgtctctcaactgaagaaggcattggcaccagctgaaaaagttcaggcttctcttcccacgctggattctgaatttggtccattagctgttcctcatcgtattttggaacgccgccttcgtcaacggggtgccaaactaattgaacaagttcaggttgaatggaagggtacttcttctccagctattacatgggagaatcttgaggaacttcgtcacaagtttccagctgcaccagcttggggtggttctcaaggagggaggaatgtcacgccaaagcattcgtcatcagactcgggcgcggaaggaaggatcaaatcaagtgggccgtcgactaccgctcggcccagacgggagaggcgcgacaacccgcgcgtgaaggggaaggattgggtccagtagCttctggctaagtctataaatagattacccttgtactgaaagaagtgaactgtattgaacaaacatattctgaataccaatcccttccccttctccaagtctgtatctgctctgtTCttctctgttcttctctattccttccaaattccagattctatctctaattcttcttgctgagatctcggttcgtaacaagcatctcgtcatgcagttcaacaatctcactgggacacttcctccctgcgccggcaacaggctgccccgcctcaaggtgctcagtgttgacagaaaccagccccatggtgccattccggtctctctctgcaattcctccaagctcgaagtga
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| CDS seq | atgcgggtggtgtggcgtgacgtgtggggtgcgcgggcccgtgggcgtgtcacggcgctagacctccgcaggcttggcctaggaggcgccatcgtcgcccaatcgtccctgtccagcctcacctacctccggtggcttgacctctcccagaaccgcctgtgtggtggcgtccccacaccgctgccactctccctcgagtacctcaacctcagtcgtaacgcgctgcagggggcggtgtcctcagagcttgggtcgcttcgccgcctccgggtgctcgtcctcgacaccaacaacctcaccggcggcatcCCTGcctccctcggaaacctcacctccctcaccgatctcgccctcaccagcaaccacctcagcggccacatccccagtgccctcggcaacctccaaaccagccccatggtgccattccggtctctctctgcaattcctccaagctcgaagtga
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| Protein seq | MRVVWRDVWGARARGRVTALDLRRLGLGGAIVAQSSLSSLTYLRWLDLSQNRLCGGVPTPLPLSLEYLNLSRNALQGAVSSELGSLRRLRVLVLDTNNLTGGIPASLGNLTSLTDLALTSNHLSGHIPSALGNLQTSPMVPFRSLSAIPPSSK |
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| Function | Probable leucine-rich repeat receptor-like protein kinase At1g35710 [UniProtKB/Swiss-Prot:Q9LP24] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_12g0013840 | OsLima_12g0013840.01 | Chr12 | 18578299 | 18584408 | + | NAM | ||
| CDS seq | atgcgggtggtgtggcgtgacgtgtggggtgcgcgggcccgtgggcgtgtcacggcgctagacctccgcaggcttggcctaggaggcgccatcgtcgcccaatcgtccctgtccagcctcacctacctccggtggcttgacctctcccagaaccgcctgtgtggtggcgtccccacaccgctgccactctccctcgagtacctcaacctcagtcgtaacgcgctgcagggggcggtgtcctcagagcttgggtcgcttcgccgcctccgggtgctcgtcctcgacaccaacaacctcaccggcggcatcCCTGcctccctcggaaacctcacctccctcaccgatctcgccctcaccagcaaccacctcagcggccacatccccagtgccctcggcaacctccaaaccagccccatggtgccattccggtctctctctgcaattcctccaagctcgaagtga
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| Protein seq | MRVVWRDVWGARARGRVTALDLRRLGLGGAIVAQSSLSSLTYLRWLDLSQNRLCGGVPTPLPLSLEYLNLSRNALQGAVSSELGSLRRLRVLVLDTNNLTGGIPASLGNLTSLTDLALTSNHLSGHIPSALGNLQTSPMVPFRSLSAIPPSSK |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0632800 | SBH | 4.831923 | 5.202940 | 3.219376 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g31470 | RBH | 0.524899 | 0.543281 | 0.321447 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0632800 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0006930 | SBH | 0.200743 | 0.0 | 0.927457 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0016440 | SBH | 0.0 | 0.0 | 13.846230 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0007170 | SBH | 1.891639 | 0.527976 | 1.866642 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0006980 | SBH | 0.0 | 0.097104 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0016530 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0259300 | SBH | 0.010403 | 3.172238 | 0.013012 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0013740 | RBH | 0.000000 | 0.0 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0280800 | RBH | 0.530293 | 1.5189 | 2.6828565 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_10g0013690 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0014060 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0014270 | SBH | 2.642038 | 15.824047 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0013930 | RBH | 0.382293 | 0.0 | 0.258029 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0014110 | RBH | 0.000000 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G003790 | SBH | 0.0 | 0.0 | 0.161586 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0006830 | SBH | 0.708414 | 0.0 | 2.183305 |
