Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_10g0013690 | OGI:10040130 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr10:19289535-19292929 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ctacagatattgggcagtattccctcttgaaagaagttgattaatacaggacaccttctgcataaccttacgctgaatgtcatcaacaaagcagaaaacggcataccttaagttcccaattgaaaataacattccaaaccatagccaagacccAaaaaccactccagccatcacaaagtacaatagatactggtcctcgcatgttctacaatatctctcgtctgatgcaagtgcataatttgtgcatgagatgttcaacggaaggccacatagcccagaattgttgctgtagattgatgggtcagtgagggtttgaagttgattcccggtgggtatcttgcctgatagatgattattcgagagattcagactgctaagggtagatataccggcaaggcttggaggaatggctcctgaaagttcgtttgatgataggtcaagagactcaagatttttcaaactaccaatgttctcaggtatgctgcgtgacagatagtttcttgacaagttcagaaattgaaggtcttggaggttcattaattcatcagggatgcattgtgataatgagttacctgacaaactgatacccgtcactaattgaatatctattgcataagtctttatttcaaatatttgctccttccccttccagattgtattgattctatcatgattaaaagaccattgtaataattcccgactagatataagctttggattcttcatggaagtaagtttaccaaaagatctgggaatcaaccctgtcaaaccattgttggtcatgtctagcagttgaagttgagaaagctgtgacaactctgatggaatttcaccactgaagttgtttgatttaaggctaagaatcttcaatgatggaaggcctttcccaatccaaataggaatatcaccaaaaaaattgttattcccaatatctaaattgatcaacttcttgcatccctctaacgctgatggaaaaactccagtgaagtcattgctggaaagatgaaccgatataagggaacaactgtagcttgcctttgctgcagggatttcacctgagaatgcattgttggaaaggtccaagaactgcagattttgcaagtaccataggcagtcgggcagttttccagtcagctggttgttcgacaggatcagaatctgaagagagagcagtttgcagaaggctgcctgggggatccaacccgatAaaaaattgctgctcaaatcaagtagggtctgcagctgaaccagattaccaagttcccttggtatcttccctgacaacctgttcttgctcaaatcaagaaatgtcagagcaccaagcttgccaagagcaactggtatcgtgccattaagcatgtttcctgacatatctattttctgtagcttagaattgttgcccaaacttgtcgggataggcccggaaaaggaattatggctcaggttgagattgaacaaaaggttgagatgacccaaatcaagtggaatacctcctgtcagattgtttccagccaagctgagaatctgcaatcttgtcatgctcccaaatgtttcaggaatgcggccggatatgcgattgccgtccatgctcaggagcgtgaggttggtacactgtccccagtcggaggacagctcaccggtaagcttgttgccggagatgtccaggtactccaggctggggtgcacgccgaaggcctccgagatgtcgccggtgaagtggttctcctctagccgaaccctgaacagccccgtgcagttcttcaggcacggtggcagcgtgccggtgaagttgttgtagttcaccgtgaagtgctccagcgcgaagccgtcgcagatgcccttgccgaggtccgcgggatggtgccgctcatgaagttgtcgaacacggcgaggtattggaggttcttgagggccgtgatggtggctggcagctcgccgtgcagaatgttggtgttgacgtcgaagctttgcaacgccgtcatgttgccaatctccggcgggattacgccggtgagattgttgaagaatagcgccaactttatgagctgcttgaggttgccgagcgagctggggatcggtccggtgagcgagttcaccgacaaatccagctctaccaggttctccaactcgccaagctctgccgggatggaaccgttaaggttgttcaggaataggtaaaggatttccagtttcctcgccttgccgagctccgatggaatcttgccggtgaacgagttgttctgcacttcgaaggatatgagctcgggccagctcgtgaacaacgccggtgggatctcaccagtgacattggtcgtggaaaggccgaactcctgcattgcccgcatccctgcaaacgtcggcggcaacccaccggagaactggttcaaggacaggtccagataagcgagattattaagattgcctagttgaggcggcaaagttgaaacaaggctagcgttcttgatgtcgagcctctgaagcatctggagctggccaagaaccgacgggattggaccgccgagctggttgtccccgagctcaagaatcctcaactgtgccatcgacccgaggaactccgggacgccgccggtgagattgttgccggccattcgcaggtcctggagcttcgtcaacctcccaagcgacgccggaatcgggccggagaacgcattgaaggacaggttgaggaacctcagattcgggagcatgtccggtattggcccgaacagagcattctgcgacaggtcgaggtaggtgatgctgccgctcctgaggacgaactccgggaagcttccattgaaggagttgaggtagagcgacatgaacgtgacggtgggcatcggcgagaacttgcggaagtcatggtcggtcaggtagtttgctcccagatcgaaatggacaatgttggggagacggcttaactggtgggggatggcgccgacgaggttgttgttgtagaggcgaagctcgacgaggccggagaggtcgccgagctgcggcggtatagagccatccaaccagttgctgccgagatcgagcaaagaaagggagcgcagccgcgagatgctggccgggatggaaccggtgaagttgttcctgttgaggtcaagctcggtcagcgccgggagcgccgcgaagtcgagcgtgtcgaggccgccgctgagaccggcgtcccggagccggagcgaagtgacgcggccggcggcgtcgcaggccacgccgcgccaggtgcagaccggcgcggcccgcgtccagccggacaGCgcggccgcgtcgcccagcagcaggctggctttccacgccagcagcgcatcggtctgtgatgtcgctgcggtgaccgatgctggcatggcggcggccgccacgaagaggacgaggaagacgacgccggccat
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| CDS seq | atggccggcgtcgtcttcctcgtcctcttcgtggcggccgccgccatgccagcatcggtcaccgcagcgacatcacagaccgatgcgctgctggcgtggaaagccagcctgctgctgggcgacgcggccgcGCtgtccggctggacgcgggccgcgccggtctgcacctggcgcggcgtggcctgcgacgccgccggccgcgtcacttcgctccggctccgggacgccggtctcagcggcggcctcgacacgctcgacttcgcggcgctcccggcgctgaccgagcttgacctcaacaggaacaacttcaccggttccatcccggccagcatctcgcggctgcgctccctttctttgctcgatctcggcagcaactggttggatggctctataccgccgcagctcggcgacctctccggcctcgtcgagcttcgcctctacaacaacaacctcgtcggcgccatcccccaccagttaagccgtctccccaacattgtccatttcgatctgggagcaaactacctgaccgaccatgacttccgcaagttctcgccgatgcccaccgtcacgttcatgtcgctctacctcaactccttcaatggaagcttcccggagttcgtcctcaggagcggcagcatcacctacctcgacctgtcgcagaatgctctgttcgggccaataccggacatgctcccgaatctgaggttcctcaacctgtccttcaatgcgttctccggcccgattccggcgtcgcttgggaggttgacgaagctccaggacctgcgaatggccggcaacaatctcaccggcggcgtcccggagttcctcgggtcgatggcacagttgaggattcttgagctcggggacaaccagctcggcggtccaatcccgtcggttcttggccagctccagatgcttcagaggctcgacatcaagaacgctagccttgtttcaactttgccgcctcaactaggcaatcttaataatctcgcttatctggacctgtccttgaaccagttctccggtgggttgccgccgacgtttgcagggatgcgggcaatgcaggagttcggcctttccacgaccaatgtcactggtgagatcccaccggcgttgttcacgagctggcccgagctcatatccttcgaagtgcagaacaactcgttcaccggcaagattccatcggagctcggcaaggcgaggaaactggaaatcctttacctattcctgaacaaccttaacggttccatcccggcagagcttggcgagttggagaacctggtagagctggatttgtcggtgaactcgctcaccggaccgatccccagctcgctcggcaacctcaagcagctcataaagttggcgctattcttcaacaatctcaccggcgtaatcccgccggagattggcaacatgacggcgttgcaaagcttcgacgtcaacaccaacattctgcacggcgagctgccagccaccatcacggccctcaagaacctccaatacctcgcccggcaccatcccgcggacctcggcaagggcatctgcgacggcttcgcgctggagcacttcacggtgaactacaacaacttcaccggcacgctgccaccgtgcctgaagaactgcacggggctgttcagggttcggctagaggagaaccacttcaccggcgacatctcggaggccttcggcgtgcaccccagcctggagtacctggacatctccggcaacaagcttaccggtgagctgtcctccgactggggacagtgtaccaacctcacgctcctgagcatggacggcaatcgcatatccggccgcattcctgaaacatttgggagcatgacaagattgcagattctcagcttggctggaaacaatctgacaggaggtattccacttgatttgggtcatctcaaccttttgttcaatctcaacctgagccataattccttttccgggcctatcccgacaagtttgggcaacaattctaagctacagaaaatagatatgtcaggaaacatgcttaatggcacgataccagttgctcttggcaagcttggtgctctgacatttcttgatttgagcaagaacaggttgtcagggaagataccaagggaacttggtaatctggttcagctgcagaccctacttgatttgagcagcaatttttTatcgggttggatcccccaggcagccttctgcaaactgctctctcttcagattctgatcctgtcgaacaaccagctgactggaaaactgcccgactgcctatggtacttgcaaaatctgcagttcttggacctttccaacaatgcattctcaggtgaaatccctgcagcaaaggcaagctacagttgttcccttatatcggttcatctttccagcaatgacttcactggagtttttccatcagcgttagagggatgcaagaagttgatcaatttagatattgggaataacaatttttttggtgatattcctatttggattgggaaaggccttccatcattgaagattcttagccttaaatcaaacaacttcagtggtgaaattccatcagagttgtcacagctttctcaacttcaactgctagacatgaccaacaatggtttgacagggttgattcccagatcttttggtaaacttacttccatgaagaatccaaagcttatatctagtcgggaattattacaatggtcttttaatcatgatagaatcaatacaatctggaaggggaaggagcaaatatttgaaataaagacttatgcaatagatattcaattagtgacgggtatcagtttgtcaggcaagatacccaccgggaatcaacttcaaaccctcactgacccatcaatctacagcaacaattctgggctatgtggccttccgttgaacatctcatgcacaaattatgcacttgcatcagacgagagatattgtagaacatgcgaggaccagtatctattgtactttgtgatggctggagtggttttTgggtcttggctatggtttggaatgtatgccgttttctgctttgttgatgacattcagcgtaaggttatgcagaaggtgtcctgtattaatcaacttctttcaagagggaatactgcccaatatctgtag
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| Protein seq | MAGVVFLVLFVAAAAMPASVTAATSQTDALLAWKASLLLGDAAALSGWTRAAPVCTWRGVACDAAGRVTSLRLRDAGLSGGLDTLDFAALPALTELDLNRNNFTGSIPASISRLRSLSLLDLGSNWLDGSIPPQLGDLSGLVELRLYNNNLVGAIPHQLSRLPNIVHFDLGANYLTDHDFRKFSPMPTVTFMSLYLNSFNGSFPEFVLRSGSITYLDLSQNALFGPIPDMLPNLRFLNLSFNAFSGPIPASLGRLTKLQDLRMAGNNLTGGVPEFLGSMAQLRILELGDNQLGGPIPSVLGQLQMLQRLDIKNASLVSTLPPQLGNLNNLAYLDLSLNQFSGGLPPTFAGMRAMQEFGLSTTNVTGEIPPALFTSWPELISFEVQNNSFTGKIPSELGKARKLEILYLFLNNLNGSIPAELGELENLVELDLSVNSLTGPIPSSLGNLKQLIKLALFFNNLTGVIPPEIGNMTALQSFDVNTNILHGELPATITALKNLQYLARHHPADLGKGICDGFALEHFTVNYNNFTGTLPPCLKNCTGLFRVRLEENHFTGDISEAFGVHPSLEYLDISGNKLTGELSSDWGQCTNLTLLSMDGNRISGRIPETFGSMTRLQILSLAGNNLTGGIPLDLGHLNLLFNLNLSHNSFSGPIPTSLGNNSKLQKIDMSGNMLNGTIPVALGKLGALTFLDLSKNRLSGKIPRELGNLVQLQTLLDLSSNFLSGWIPQAAFCKLLSLQILILSNNQLTGKLPDCLWYLQNLQFLDLSNNAFSGEIPAAKASYSCSLISVHLSSNDFTGVFPSALEGCKKLINLDIGNNNFFGDIPIWIGKGLPSLKILSLKSNNFSGEIPSELSQLSQLQLLDMTNNGLTGLIPRSFGKLTSMKNPKLISSRELLQWSFNHDRINTIWKGKEQIFEIKTYAIDIQLVTGISLSGKIPTGNQLQTLTDPSIYSNNSGLCGLPLNISCTNYALASDERYCRTCEDQYLLYFVMAGVVFGSWLWFGMYAVFCFVDDIQRKVMQKVSCINQLLSRGNTAQYL |
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| Function | Probable leucine-rich repeat receptor-like protein kinase At1g35710 [UniProtKB/Swiss-Prot:Q9LP24] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_10g0013690 | OsLima_10g0013690.01 | Chr10 | 19289535 | 19292929 | - | NAM | ||
| CDS seq | atggccggcgtcgtcttcctcgtcctcttcgtggcggccgccgccatgccagcatcggtcaccgcagcgacatcacagaccgatgcgctgctggcgtggaaagccagcctgctgctgggcgacgcggccgcGCtgtccggctggacgcgggccgcgccggtctgcacctggcgcggcgtggcctgcgacgccgccggccgcgtcacttcgctccggctccgggacgccggtctcagcggcggcctcgacacgctcgacttcgcggcgctcccggcgctgaccgagcttgacctcaacaggaacaacttcaccggttccatcccggccagcatctcgcggctgcgctccctttctttgctcgatctcggcagcaactggttggatggctctataccgccgcagctcggcgacctctccggcctcgtcgagcttcgcctctacaacaacaacctcgtcggcgccatcccccaccagttaagccgtctccccaacattgtccatttcgatctgggagcaaactacctgaccgaccatgacttccgcaagttctcgccgatgcccaccgtcacgttcatgtcgctctacctcaactccttcaatggaagcttcccggagttcgtcctcaggagcggcagcatcacctacctcgacctgtcgcagaatgctctgttcgggccaataccggacatgctcccgaatctgaggttcctcaacctgtccttcaatgcgttctccggcccgattccggcgtcgcttgggaggttgacgaagctccaggacctgcgaatggccggcaacaatctcaccggcggcgtcccggagttcctcgggtcgatggcacagttgaggattcttgagctcggggacaaccagctcggcggtccaatcccgtcggttcttggccagctccagatgcttcagaggctcgacatcaagaacgctagccttgtttcaactttgccgcctcaactaggcaatcttaataatctcgcttatctggacctgtccttgaaccagttctccggtgggttgccgccgacgtttgcagggatgcgggcaatgcaggagttcggcctttccacgaccaatgtcactggtgagatcccaccggcgttgttcacgagctggcccgagctcatatccttcgaagtgcagaacaactcgttcaccggcaagattccatcggagctcggcaaggcgaggaaactggaaatcctttacctattcctgaacaaccttaacggttccatcccggcagagcttggcgagttggagaacctggtagagctggatttgtcggtgaactcgctcaccggaccgatccccagctcgctcggcaacctcaagcagctcataaagttggcgctattcttcaacaatctcaccggcgtaatcccgccggagattggcaacatgacggcgttgcaaagcttcgacgtcaacaccaacattctgcacggcgagctgccagccaccatcacggccctcaagaacctccaatacctcgcccggcaccatcccgcggacctcggcaagggcatctgcgacggcttcgcgctggagcacttcacggtgaactacaacaacttcaccggcacgctgccaccgtgcctgaagaactgcacggggctgttcagggttcggctagaggagaaccacttcaccggcgacatctcggaggccttcggcgtgcaccccagcctggagtacctggacatctccggcaacaagcttaccggtgagctgtcctccgactggggacagtgtaccaacctcacgctcctgagcatggacggcaatcgcatatccggccgcattcctgaaacatttgggagcatgacaagattgcagattctcagcttggctggaaacaatctgacaggaggtattccacttgatttgggtcatctcaaccttttgttcaatctcaacctgagccataattccttttccgggcctatcccgacaagtttgggcaacaattctaagctacagaaaatagatatgtcaggaaacatgcttaatggcacgataccagttgctcttggcaagcttggtgctctgacatttcttgatttgagcaagaacaggttgtcagggaagataccaagggaacttggtaatctggttcagctgcagaccctacttgatttgagcagcaatttttTatcgggttggatcccccaggcagccttctgcaaactgctctctcttcagattctgatcctgtcgaacaaccagctgactggaaaactgcccgactgcctatggtacttgcaaaatctgcagttcttggacctttccaacaatgcattctcaggtgaaatccctgcagcaaaggcaagctacagttgttcccttatatcggttcatctttccagcaatgacttcactggagtttttccatcagcgttagagggatgcaagaagttgatcaatttagatattgggaataacaatttttttggtgatattcctatttggattgggaaaggccttccatcattgaagattcttagccttaaatcaaacaacttcagtggtgaaattccatcagagttgtcacagctttctcaacttcaactgctagacatgaccaacaatggtttgacagggttgattcccagatcttttggtaaacttacttccatgaagaatccaaagcttatatctagtcgggaattattacaatggtcttttaatcatgatagaatcaatacaatctggaaggggaaggagcaaatatttgaaataaagacttatgcaatagatattcaattagtgacgggtatcagtttgtcaggcaagatacccaccgggaatcaacttcaaaccctcactgacccatcaatctacagcaacaattctgggctatgtggccttccgttgaacatctcatgcacaaattatgcacttgcatcagacgagagatattgtagaacatgcgaggaccagtatctattgtactttgtgatggctggagtggttttTgggtcttggctatggtttggaatgtatgccgttttctgctttgttgatgacattcagcgtaaggttatgcagaaggtgtcctgtattaatcaacttctttcaagagggaatactgcccaatatctgtag
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| Protein seq | MAGVVFLVLFVAAAAMPASVTAATSQTDALLAWKASLLLGDAAALSGWTRAAPVCTWRGVACDAAGRVTSLRLRDAGLSGGLDTLDFAALPALTELDLNRNNFTGSIPASISRLRSLSLLDLGSNWLDGSIPPQLGDLSGLVELRLYNNNLVGAIPHQLSRLPNIVHFDLGANYLTDHDFRKFSPMPTVTFMSLYLNSFNGSFPEFVLRSGSITYLDLSQNALFGPIPDMLPNLRFLNLSFNAFSGPIPASLGRLTKLQDLRMAGNNLTGGVPEFLGSMAQLRILELGDNQLGGPIPSVLGQLQMLQRLDIKNASLVSTLPPQLGNLNNLAYLDLSLNQFSGGLPPTFAGMRAMQEFGLSTTNVTGEIPPALFTSWPELISFEVQNNSFTGKIPSELGKARKLEILYLFLNNLNGSIPAELGELENLVELDLSVNSLTGPIPSSLGNLKQLIKLALFFNNLTGVIPPEIGNMTALQSFDVNTNILHGELPATITALKNLQYLARHHPADLGKGICDGFALEHFTVNYNNFTGTLPPCLKNCTGLFRVRLEENHFTGDISEAFGVHPSLEYLDISGNKLTGELSSDWGQCTNLTLLSMDGNRISGRIPETFGSMTRLQILSLAGNNLTGGIPLDLGHLNLLFNLNLSHNSFSGPIPTSLGNNSKLQKIDMSGNMLNGTIPVALGKLGALTFLDLSKNRLSGKIPRELGNLVQLQTLLDLSSNFLSGWIPQAAFCKLLSLQILILSNNQLTGKLPDCLWYLQNLQFLDLSNNAFSGEIPAAKASYSCSLISVHLSSNDFTGVFPSALEGCKKLINLDIGNNNFFGDIPIWIGKGLPSLKILSLKSNNFSGEIPSELSQLSQLQLLDMTNNGLTGLIPRSFGKLTSMKNPKLISSRELLQWSFNHDRINTIWKGKEQIFEIKTYAIDIQLVTGISLSGKIPTGNQLQTLTDPSIYSNNSGLCGLPLNISCTNYALASDERYCRTCEDQYLLYFVMAGVVFGSWLWFGMYAVFCFVDDIQRKVMQKVSCINQLLSRGNTAQYL
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_10g0375400 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os10g33080 | RBH | 0.039527 | 0.040316 | 0.336083 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os10g0375400 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_10g0014060 | SBH | 0.425012 | 13.887116 | 1.809068 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_10g0014270 | SBH | 0.088633 | 2.990202 | 1.026245 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_10g0013710 | SBH | 0.0 | 6.074656 | 0.503720 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_10g0014060 | SBH | 0.000000 | 0.089605 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_10g0013910 | SBH | 0.181931 | 21.960766 | 0.247718 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_10G0288600 | SBH | 0.936499 | 2.2112275 | 2.144864 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_10g0013930 | SBH | 0.0 | 0.637118 | 0.109359 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_10G0310300 | SBH | 0.5951745 | 0.3719285 | 0.127059 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_10g0013710 | SBH | 0.014096 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_10g0013570 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_10g0013930 | SBH | 0.0 | 2.543053 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_10g0013640 | SBH | 0.0 | 0.0 | 0.057709 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_10g0014180 | SBH | 0.040970 | 2.252450 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_10G013900 | SBH | 0.0 | 0.476957 | 0.127443 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_10g0013840 | SBH | 0.0 | 0.0 | 0.0 |
