Basic Info

Gene ID OGI # | Score   Accession | Assembly | Annotation Location Links
OsLima_11g0023750 OGI:11079110 | 9/16 LIMA | Os127564RS1 | Gramene(+IsoSeq) Chr11:29464312-29469522
Gene Symbol -
DNA seq

atggcagcggtattagatgctttgattgtctcatgcatcaagaagttgcagtttatcattacagacaaggcaatactcattttaggggtagaagatgaacttgaagaactgcagcgaagaacagacgtcataagatcttctcttcaggatgctgaggcaaggaggatggaagattcagcagttgaaaaatggcttgaccagctaagagatgttatgtatgatgtcgatgatattattgatttggctagatttaaaggaagcatcctactagctgaccatccttcatcatcatcaagcaaaccaacacgttgcaattgcccttcgtgtcattgtaatatttggacacgtcatgaggttgctgttaagattagaagcctgaacaaaaagatagcgaacatttcaaatgatgaagtacttcaagatctcagacgtagaccgcatccgagaaatggttcgatatggacaccgataaaaacctccagcatagttgaacccaaccttgtgggtgaagaggtcatacttgcttgcagagaattggtggatttggttattgaaaataaggaaaagaaggattacaagcttggtattgtagggacaggaggagttggcaagacaacacttgctcagcaaatatataatgatgaaaaaataacagggaatttcgataaacatgcatgggtttgtgtttcaacagacagcacacaaacttctctattggaagaagttcttcggatcatgaaaattcgatatgggaaagcaaaatcagttgaagagctccaaaacaagctcaaatcagccattaaagagaagagttttttccttgtgctagatgatgtatgggaatctaatgcgtggactaattcacttcAaaaaccattgcatgctgcagccaaggggatagttatagtaactacgagaaatgaaaaagtagctcaggaaattaaagtggaccatacccataaagttcatttgatgtcagaaaatgtaggatgggatctactttggaagagcatgggcataaccgaagagaaacaagttcatcatctgcgggacatagggattgagattgttcaccaatgtggttatctcccactagcaataaagatcatcgccaaagttttaattagcaaagagaaaacaaatgatgaatggaaaaggatattgagcaacaatggttcatgaataatcttcctgatgaactaagagctttatatctgagttacagtgagctatcacaccaactgaaacaatgttttctttattgtgctatatatcctgaacattcaaccattaaccgtgatgatcttattagtatgtgggtggctgaagacttcattgatgagcagaaaggccaactactagaagatacagcagtagaatactacaatgagctgatccatcggaacctccttcaactagacctttcatattttgacctaggtgggtgcaagatgcatggtctcttaaggcagcttgtttgctatttatcaagagaagaatgttttgttggagatccagaatcacaaaatggtaataaaatgagtaaaatgcgacgtgtttctgtggtgacagagaaggacacggtggtgttaccaagtatggataagaagcagtataaagtgaggacttacagaacttcatattccaagtcactgagagtttacaatccacttttcaagaggcttacatatctccgtgttttggatttgactggcacacttgtacagagcatcccaagtcacattggaaatttgattcatatgcgtttgattaatcttgatgggacaaacatatctcgtctcccagagtccattggtaaccttcaaaatcttcaagtactgaacctgcaaaggtgtaaatctttgtacaggcttcctttggcaaccacgaaactatgcaatttaaggcggcttggtcttcttgatacaccaataaataaggttccaaaagggataggaagactgcaattccttaatgatttggaaggatttcctattggaagtgtaacttacaataaaaaaatgcaagatggatggaatttggaagacttggctgatctttcacagttgaggcggcttgttatgataaaactagaaagatgtactccttgcagcagtgaagattcatttctcctaacaaacaaagaacatctgaaagttctatatctagaatgcactgaaccaacaaatgaagcatgttcagatgaacatgttaaacatgttgagaatatcttcgagcagctagtccctccacagaacttgaaagatctatctgttcTGAGATTCCTTGGTCAGAACTTACCCTCCTGGCTTTGTAATGTCTATCTGCCTTCACTGAAATATTttgatcctctctgattgcaaatcttgcatacatcttccaccaatatggcagctacccaacttggaacgcctgaaaattgtgaaagcaactgcaattaccaagatcggacccgaatttattgggcaatttccaagatccagggaagcagttgctttccccaagcttgaatggttgatcatcaatgatatgcccaactgggaggaatgggcctttactggagaagatgagatatcacttgcagcaatgaaggaaggaggaggggatggaactgctgtggccgaagaggaggagatatcacttgcagcaatgaatgaaggaggagaggatggaaccactgtgacggaaaagggggaagcctcatttccaaggttgtgtgtgctgccctctttgaagaggttggacattgataactgccccaagctgagggctctcccacaacagcttggacacgaggccaccagtttgaaagagctctcccttgtagcagcaagctgcttgaagtcggtgaaggaccttccatccctatctggtttcctttctgtttgtagatgtgaaggcctggagagggttacagaacttcccaaagtgagaaagctgtttgtaagtgtttgtccaaatttgagctgtgttgaggagttaggcagtttggagcagctatggttggatgtgaatatggaggactcatcaccgtgggtgcatgggcttcgagagcagtaccgccacctggatgtctacacgtggcctagagagtgagatgtgaagacccaactaaaagacagtagattggtagagacacaaggtaagggcattggctttgtatttgttgatacatatttttattctatcgttatctaaaatagtggaaacatattttaatttcattccaactttgcatattttcagccaaaatcatgcatgtctaatgttattctcacctgtacactttacattcattgatgttgcacactttgcatcattcttagtaaggagatcatcatatatattagacaaaatgtcaaactttcggtagttgttatgattaatttttgtacctatattactgaccttgtcacctaacactagtacagaaatccttaaactttgtgttgtaattattctcaatgtccataaccagtacagaaacaagtgttatagcattttataatctattatatcctaaagtacattaaacttcctacagacgcttctaagccatcacgtagcactcctacgaacactcctaagcctccacatgacattctaataaattaaagaaatttctaaaaattctgagaaaaacaaaaacatcttgtcatttatctttattaaatctagtgaaccaatcatttacaaccattagatctagtcgtcaacccgtgcgttgtatgggttattaaaatatttaagaaattcaattgtacatgtggttgaatacatgggttaaaatgattattttgcttAaaaaaatgttggaatggcggcattcggacatccggtctcttgtacttaaccatgatttgacttggaaaacagtgagggaagtctCcacggttcggatataatgatgattaatccAaaactaattaattaattcaattAAaaatactcaactacagtaccatgactatagctggccaaatgggtggcccggcccaacacgcacggccccactagtggcacgacccactaaggcacggcaactatagcaggccgtgcacgtggcccataaaaaattgaaaattgagggaaaaataatatgaagttaaaaaatgaataaagataggacaaacgtgaggaaaatttaggaaatataggaaatatattagaaaatatatggtaaaaataggataaaatatgaaaaaaaaatAaaaaaaatatgagaaaaatatggaaaaaattagaaaattgtagggaaaataaatgggcagctgggccgtgctcgtgccgacccgtcaacaggcatgccgtgccgtgtaagtccatgggctaaggtgctggcccaagcacgacacggacaaatgggccatgccggcacagcacacagtccgcccaacatctgttcctagtgtagggctcctaattaattaaggtttgtttggtgaaacaaaaaagccacctaaatgtctttgtattggttcaaattgattaatagttttgttcgtgttctacctgttaaaagaagaagaggatattgctgatcgacatgcctatgtatagtccatgtgtgtcttttccttatgccttttgtaatgcacgtgtattgtttggtaagttcaattccagaaaatatgattgttgaaaaactgatagcacatatattttcttttccttaattaagttattaaattaccaaaatacttatgtatatatacatccatgattaatttctgtgtgcttatttattttgtaggttgttaatcttgaagaatttgggctgtgcagtcacttgtaatatgtatttttgttttacctagttattggtctttcaaatattaaaaaaatgttatttttttaaaaataaataaaacaaaaatatcaaaaaagggaaaatgtcaaaaaaaatattttttctttagctcttgtaaaATatattgtcatgtttcgttagattttgcgtgtgtgtttcttttctatttattttttactgtaggtgtgtaggtaactccgcctatgtcatcgtaggtataactaaatgacatagccggtcccaagcccgAaaaaaggaggaGgggatagtttggtatatatgtgtgttgaaatgatgctccgttgctagatcattGggaattttctgcacttttattagattaatttcattttcagtgatggaatagttgtggaaacatttctggagactcatccaccctt

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CDS seq

atggcagcggtattagatgctttgattgtctcatgcatcaagaagttgcagtttatcattacagacaaggcaatactcattttaggggtagaagatgaacttgaagaactgcagcgaagaacagacgtcataagatcttctcttcaggatgctgaggcaaggaggatggaagattcagcagttgaaaaatggcttgaccagctaagagatgttatgtatgatgtcgatgatattattgatttggctagatttaaaggaagcatcctactagctgaccatccttcatcatcatcaagcaaaccaacacgttgcaattgcccttcgtgtcattgtaatatttggacacgtcatgaggttgctgttaagattagaagcctgaacaaaaagatagcgaacatttcaaatgatgaagtacttcaagatctcagacgtagaccgcatccgagaaatggttcgatatggacaccgataaaaacctccagcatagttgaacccaaccttgtgggtgaagaggtcatacttgcttgcagagaattggtggatttggttattgaaaataaggaaaagaaggattacaagcttggtattgtagggacaggaggagttggcaagacaacacttgctcagcaaatatataatgatgaaaaaataacagggaatttcgataaacatgcatgggtttgtgtttcaacagacagcacacaaacttctctattggaagaagttcttcggatcatgaaaattcgatatgggaaagcaaaatcagttgaagagctccaaaacaagctcaaatcagccattaaagagaagagttttttccttgtgctagatgatgtatgggaatctaatgcgtggactaattcacttcAaaaaccattgcatgctgcagccaaggggatagttatagtaactacgagaaatgaaaaagtagctcaggaaattaaagtggaccatacccataaagttcatttgatgtcagaaaatgtaggatgggatctactttggaagagcatgggcataaccgaagagaaacaagttcatcatctgcgggacatagggattgagattgttcaccaatgtggttatctcccactagcaataaagatcatcgccaaagttttaattagcaaagagaaaacaaatgatgaatggaaaaggatattgagcaacaatgacttcattgatgagcagaaaggccaactactagaagatacagcagtagaatactacaatgagctgatccatcggaacctccttcaactagacctttcatattttgacctaggtgggtgcaagatgcatggtctcttaaggcagcttgtttgctatttatcaagagaagaatgttttgttggagatccagaatcacaaaatggtaataaaatgagtaaaatgcgacgtgtttctgtggtgacagagaaggacacggtggtgttaccaagtatggataagaagcagtataaagtgaggacttacagaacttcatattccaagtcactgagagtttacaatccacttttcaagaggcttacatatctccgtgttttggatttgactggcacacttgtacagagcatcccaagtcacattggaaatttgattcatatgcgtttgattaatcttgatgggacaaacatatctcgtctcccagagtccattggtaaccttcaaaatcttcaagtactgaacctgcaaaggtgtaaatctttgtacaggcttcctttggcaaccacgaaactatgcaatttaaggcggcttggtcttcttgatacaccaataaataaggttccaaaagggataggaagactgcaattccttaatgatttggaaggatttcctattggaagtgtaacttacaataaaaaaatgcaagatggatggaatttggaagacttggctgatctttcacagttgaggcggcttgttatgataaaactagaaagatgtactccttgcagcagtgaagattcatttctcctaacaaacaaagaacatctgaaagttctatatctagaatgcactgaaccaacaaatgaagcatgttcagatgaacatgttaaacatgttgagaatatcttcgagcagctagtccctccacagaacttgaaagatctatctgttcTGAGATTCCTTGcaactgcaattaccaagatcggacccgaatttattgggcaatttccaagatccagggaagcagttgctttccccaagcttgaatggttgatcatcaatgatatgcccaactgggaggaatgggcctttactggagaagatgagatatcacttgcagcaatgaaggaaggaggaggggatggaactgctgtggccgaagaggaggagatatcacttgcagcaatgaatgaaggaggagaggatggaaccactgtgacggaaaagggggaagcctcatttccaaggttgtgtgtgctgccctctttgaagaggttggacattgataactgccccaagctgagggctctcccacaacagcttggacacgaggccaccagtttgaaagagctctcccttgtagcagcaagctgcttgaagtcggtgaaggaccttccatccctatctggtttcctttctgtttgtagatgtgaaggcctggagagggttacagaacttcccaaagtgagaaagctgtttgtaagtgtttgtccaaatttgagctgtgttgaggagttaggcagtttggagcagctatggttggatgtgaatatggaggactcatcaccgtgggtgcatgggcttcgagagcagtaccgccacctggatgtctacacgtggcctagagagtga

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Protein seq

MAAVLDALIVSCIKKLQFIITDKAILILGVEDELEELQRRTDVIRSSLQDAEARRMEDSAVEKWLDQLRDVMYDVDDIIDLARFKGSILLADHPSSSSSKPTRCNCPSCHCNIWTRHEVAVKIRSLNKKIANISNDEVLQDLRRRPHPRNGSIWTPIKTSSIVEPNLVGEEVILACRELVDLVIENKEKKDYKLGIVGTGGVGKTTLAQQIYNDEKITGNFDKHAWVCVSTDSTQTSLLEEVLRIMKIRYGKAKSVEELQNKLKSAIKEKSFFLVLDDVWESNAWTNSLQKPLHAAAKGIVIVTTRNEKVAQEIKVDHTHKVHLMSENVGWDLLWKSMGITEEKQVHHLRDIGIEIVHQCGYLPLAIKIIAKVLISKEKTNDEWKRILSNNDFIDEQKGQLLEDTAVEYYNELIHRNLLQLDLSYFDLGGCKMHGLLRQLVCYLSREECFVGDPESQNGNKMSKMRRVSVVTEKDTVVLPSMDKKQYKVRTYRTSYSKSLRVYNPLFKRLTYLRVLDLTGTLVQSIPSHIGNLIHMRLINLDGTNISRLPESIGNLQNLQVLNLQRCKSLYRLPLATTKLCNLRRLGLLDTPINKVPKGIGRLQFLNDLEGFPIGSVTYNKKMQDGWNLEDLADLSQLRRLVMIKLERCTPCSSEDSFLLTNKEHLKVLYLECTEPTNEACSDEHVKHVENIFEQLVPPQNLKDLSVLRFLATAITKIGPEFIGQFPRSREAVAFPKLEWLIINDMPNWEEWAFTGEDEISLAAMKEGGGDGTAVAEEEEISLAAMNEGGEDGTTVTEKGEASFPRLCVLPSLKRLDIDNCPKLRALPQQLGHEATSLKELSLVAASCLKSVKDLPSLSGFLSVCRCEGLERVTELPKVRKLFVSVCPNLSCVEELGSLEQLWLDVNMEDSSPWVHGLREQYRHLDVYTWPRE

Function Putative disease resistance protein RGA4 [UniProtKB/Swiss-Prot:Q7XA39]

Transcripts

Gene Transcript Chromosome Start End Strand Source
OsLima_11g0023750 OsLima_11g0023750.01 Chr11 29464312 29469522 + NAM
CDS seq

atggcagcggtattagatgctttgattgtctcatgcatcaagaagttgcagtttatcattacagacaaggcaatactcattttaggggtagaagatgaacttgaagaactgcagcgaagaacagacgtcataagatcttctcttcaggatgctgaggcaaggaggatggaagattcagcagttgaaaaatggcttgaccagctaagagatgttatgtatgatgtcgatgatattattgatttggctagatttaaaggaagcatcctactagctgaccatccttcatcatcatcaagcaaaccaacacgttgcaattgcccttcgtgtcattgtaatatttggacacgtcatgaggttgctgttaagattagaagcctgaacaaaaagatagcgaacatttcaaatgatgaagtacttcaagatctcagacgtagaccgcatccgagaaatggttcgatatggacaccgataaaaacctccagcatagttgaacccaaccttgtgggtgaagaggtcatacttgcttgcagagaattggtggatttggttattgaaaataaggaaaagaaggattacaagcttggtattgtagggacaggaggagttggcaagacaacacttgctcagcaaatatataatgatgaaaaaataacagggaatttcgataaacatgcatgggtttgtgtttcaacagacagcacacaaacttctctattggaagaagttcttcggatcatgaaaattcgatatgggaaagcaaaatcagttgaagagctccaaaacaagctcaaatcagccattaaagagaagagttttttccttgtgctagatgatgtatgggaatctaatgcgtggactaattcacttcAaaaaccattgcatgctgcagccaaggggatagttatagtaactacgagaaatgaaaaagtagctcaggaaattaaagtggaccatacccataaagttcatttgatgtcagaaaatgtaggatgggatctactttggaagagcatgggcataaccgaagagaaacaagttcatcatctgcgggacatagggattgagattgttcaccaatgtggttatctcccactagcaataaagatcatcgccaaagttttaattagcaaagagaaaacaaatgatgaatggaaaaggatattgagcaacaatgacttcattgatgagcagaaaggccaactactagaagatacagcagtagaatactacaatgagctgatccatcggaacctccttcaactagacctttcatattttgacctaggtgggtgcaagatgcatggtctcttaaggcagcttgtttgctatttatcaagagaagaatgttttgttggagatccagaatcacaaaatggtaataaaatgagtaaaatgcgacgtgtttctgtggtgacagagaaggacacggtggtgttaccaagtatggataagaagcagtataaagtgaggacttacagaacttcatattccaagtcactgagagtttacaatccacttttcaagaggcttacatatctccgtgttttggatttgactggcacacttgtacagagcatcccaagtcacattggaaatttgattcatatgcgtttgattaatcttgatgggacaaacatatctcgtctcccagagtccattggtaaccttcaaaatcttcaagtactgaacctgcaaaggtgtaaatctttgtacaggcttcctttggcaaccacgaaactatgcaatttaaggcggcttggtcttcttgatacaccaataaataaggttccaaaagggataggaagactgcaattccttaatgatttggaaggatttcctattggaagtgtaacttacaataaaaaaatgcaagatggatggaatttggaagacttggctgatctttcacagttgaggcggcttgttatgataaaactagaaagatgtactccttgcagcagtgaagattcatttctcctaacaaacaaagaacatctgaaagttctatatctagaatgcactgaaccaacaaatgaagcatgttcagatgaacatgttaaacatgttgagaatatcttcgagcagctagtccctccacagaacttgaaagatctatctgttcTGAGATTCCTTGcaactgcaattaccaagatcggacccgaatttattgggcaatttccaagatccagggaagcagttgctttccccaagcttgaatggttgatcatcaatgatatgcccaactgggaggaatgggcctttactggagaagatgagatatcacttgcagcaatgaaggaaggaggaggggatggaactgctgtggccgaagaggaggagatatcacttgcagcaatgaatgaaggaggagaggatggaaccactgtgacggaaaagggggaagcctcatttccaaggttgtgtgtgctgccctctttgaagaggttggacattgataactgccccaagctgagggctctcccacaacagcttggacacgaggccaccagtttgaaagagctctcccttgtagcagcaagctgcttgaagtcggtgaaggaccttccatccctatctggtttcctttctgtttgtagatgtgaaggcctggagagggttacagaacttcccaaagtgagaaagctgtttgtaagtgtttgtccaaatttgagctgtgttgaggagttaggcagtttggagcagctatggttggatgtgaatatggaggactcatcaccgtgggtgcatgggcttcgagagcagtaccgccacctggatgtctacacgtggcctagagagtga

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Protein seq

MAAVLDALIVSCIKKLQFIITDKAILILGVEDELEELQRRTDVIRSSLQDAEARRMEDSAVEKWLDQLRDVMYDVDDIIDLARFKGSILLADHPSSSSSKPTRCNCPSCHCNIWTRHEVAVKIRSLNKKIANISNDEVLQDLRRRPHPRNGSIWTPIKTSSIVEPNLVGEEVILACRELVDLVIENKEKKDYKLGIVGTGGVGKTTLAQQIYNDEKITGNFDKHAWVCVSTDSTQTSLLEEVLRIMKIRYGKAKSVEELQNKLKSAIKEKSFFLVLDDVWESNAWTNSLQKPLHAAAKGIVIVTTRNEKVAQEIKVDHTHKVHLMSENVGWDLLWKSMGITEEKQVHHLRDIGIEIVHQCGYLPLAIKIIAKVLISKEKTNDEWKRILSNNDFIDEQKGQLLEDTAVEYYNELIHRNLLQLDLSYFDLGGCKMHGLLRQLVCYLSREECFVGDPESQNGNKMSKMRRVSVVTEKDTVVLPSMDKKQYKVRTYRTSYSKSLRVYNPLFKRLTYLRVLDLTGTLVQSIPSHIGNLIHMRLINLDGTNISRLPESIGNLQNLQVLNLQRCKSLYRLPLATTKLCNLRRLGLLDTPINKVPKGIGRLQFLNDLEGFPIGSVTYNKKMQDGWNLEDLADLSQLRRLVMIKLERCTPCSSEDSFLLTNKEHLKVLYLECTEPTNEACSDEHVKHVENIFEQLVPPQNLKDLSVLRFLATAITKIGPEFIGQFPRSREAVAFPKLEWLIINDMPNWEEWAFTGEDEISLAAMKEGGGDGTAVAEEEEISLAAMNEGGEDGTTVTEKGEASFPRLCVLPSLKRLDIDNCPKLRALPQQLGHEATSLKELSLVAASCLKSVKDLPSLSGFLSVCRCEGLERVTELPKVRKLFVSVCPNLSCVEELGSLEQLWLDVNMEDSSPWVHGLREQYRHLDVYTWPRE

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Event Type Chromosome Start End Strand Alternative mRNAs Total mRNAs Source

Expression

Leaf Root Panicle
FPKM 0.067782 1.569802 None

Homologues

Genome & Annotation Homologs Type Expression(FPKM)
Leaf Root Panicle
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) OsNip_11g0676500 RBH 0.0 0.000000 3.153747
Nipponbare | IRGSP 1.0 | MSU LOC_Os11g45130 RBH 0.0 0.000000 0.139361
Nipponbare | IRGSP 1.0 | RAP-db Os11g0676500 RBH None None None
Azucena | AzucenaRS1 | Gramene(+IsoSeq) OsAzu_11g0023840 SBH 0.069281 0.000000 1.847165
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) OsKeNa_11g0023440 SBH 0.068956 0.290150 0.153786
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) OsCMeo_11g0023090 SBH 0.067817 0.359010 0.315617
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) OsARC_11g0023030 SBH 0.081510 0.111143 None
PR 106 | Os127742RS1 | Gramene(+IsoSeq) OsPr106_11g0023130 SBH 0.0 2.865955 0.108137
Minghui 63 | MH63RS3 | HZAU OsMH63_11G0419900 SBH 0.593919 1.271223 0
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) OsIR64_11g0023950 SBH 0.170500 0.197489 0.487290
Zhenshan 97 | ZS97RS3 | HZAU OsZS97_11G0430900 RBH 0.8587925 169.4659275 0.384886
LIMA | Os127564RS1 | Gramene(+IsoSeq) NA NA NA NA NA
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) OsKYG_11g0022320 SBH 0.694426 0.0 None
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) OsGoSa_11g0023280 SBH 2.088418 9.239458 None
LIU XU | Os125827RS1 | Gramene(+IsoSeq) OsLiXu_11g0022970 RBH 0.0 0.0 0.0
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) OsLaMu_11g0023290 RBH 0.0 0.000000 None
N22 | OsN22RS2 | Gramene(+IsoSeq) OsN22_11G023340 RBH 0.478029 16.708927 1.419603
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) OsNaBo_11g0023770 RBH 1.450534 236.263718 0.217790
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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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