Basic Info |
Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
OsLima_11g0023750 | OGI:11079110 | 9/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr11:29464312-29469522 | ||||||||
Gene Symbol | - | ||||||||||
DNA seq | atggcagcggtattagatgctttgattgtctcatgcatcaagaagttgcagtttatcattacagacaaggcaatactcattttaggggtagaagatgaacttgaagaactgcagcgaagaacagacgtcataagatcttctcttcaggatgctgaggcaaggaggatggaagattcagcagttgaaaaatggcttgaccagctaagagatgttatgtatgatgtcgatgatattattgatttggctagatttaaaggaagcatcctactagctgaccatccttcatcatcatcaagcaaaccaacacgttgcaattgcccttcgtgtcattgtaatatttggacacgtcatgaggttgctgttaagattagaagcctgaacaaaaagatagcgaacatttcaaatgatgaagtacttcaagatctcagacgtagaccgcatccgagaaatggttcgatatggacaccgataaaaacctccagcatagttgaacccaaccttgtgggtgaagaggtcatacttgcttgcagagaattggtggatttggttattgaaaataaggaaaagaaggattacaagcttggtattgtagggacaggaggagttggcaagacaacacttgctcagcaaatatataatgatgaaaaaataacagggaatttcgataaacatgcatgggtttgtgtttcaacagacagcacacaaacttctctattggaagaagttcttcggatcatgaaaattcgatatgggaaagcaaaatcagttgaagagctccaaaacaagctcaaatcagccattaaagagaagagttttttccttgtgctagatgatgtatgggaatctaatgcgtggactaattcacttcAaaaaccattgcatgctgcagccaaggggatagttatagtaactacgagaaatgaaaaagtagctcaggaaattaaagtggaccatacccataaagttcatttgatgtcagaaaatgtaggatgggatctactttggaagagcatgggcataaccgaagagaaacaagttcatcatctgcgggacatagggattgagattgttcaccaatgtggttatctcccactagcaataaagatcatcgccaaagttttaattagcaaagagaaaacaaatgatgaatggaaaaggatattgagcaacaatggttcatgaataatcttcctgatgaactaagagctttatatctgagttacagtgagctatcacaccaactgaaacaatgttttctttattgtgctatatatcctgaacattcaaccattaaccgtgatgatcttattagtatgtgggtggctgaagacttcattgatgagcagaaaggccaactactagaagatacagcagtagaatactacaatgagctgatccatcggaacctccttcaactagacctttcatattttgacctaggtgggtgcaagatgcatggtctcttaaggcagcttgtttgctatttatcaagagaagaatgttttgttggagatccagaatcacaaaatggtaataaaatgagtaaaatgcgacgtgtttctgtggtgacagagaaggacacggtggtgttaccaagtatggataagaagcagtataaagtgaggacttacagaacttcatattccaagtcactgagagtttacaatccacttttcaagaggcttacatatctccgtgttttggatttgactggcacacttgtacagagcatcccaagtcacattggaaatttgattcatatgcgtttgattaatcttgatgggacaaacatatctcgtctcccagagtccattggtaaccttcaaaatcttcaagtactgaacctgcaaaggtgtaaatctttgtacaggcttcctttggcaaccacgaaactatgcaatttaaggcggcttggtcttcttgatacaccaataaataaggttccaaaagggataggaagactgcaattccttaatgatttggaaggatttcctattggaagtgtaacttacaataaaaaaatgcaagatggatggaatttggaagacttggctgatctttcacagttgaggcggcttgttatgataaaactagaaagatgtactccttgcagcagtgaagattcatttctcctaacaaacaaagaacatctgaaagttctatatctagaatgcactgaaccaacaaatgaagcatgttcagatgaacatgttaaacatgttgagaatatcttcgagcagctagtccctccacagaacttgaaagatctatctgttcTGAGATTCCTTGGTCAGAACTTACCCTCCTGGCTTTGTAATGTCTATCTGCCTTCACTGAAATATTttgatcctctctgattgcaaatcttgcatacatcttccaccaatatggcagctacccaacttggaacgcctgaaaattgtgaaagcaactgcaattaccaagatcggacccgaatttattgggcaatttccaagatccagggaagcagttgctttccccaagcttgaatggttgatcatcaatgatatgcccaactgggaggaatgggcctttactggagaagatgagatatcacttgcagcaatgaaggaaggaggaggggatggaactgctgtggccgaagaggaggagatatcacttgcagcaatgaatgaaggaggagaggatggaaccactgtgacggaaaagggggaagcctcatttccaaggttgtgtgtgctgccctctttgaagaggttggacattgataactgccccaagctgagggctctcccacaacagcttggacacgaggccaccagtttgaaagagctctcccttgtagcagcaagctgcttgaagtcggtgaaggaccttccatccctatctggtttcctttctgtttgtagatgtgaaggcctggagagggttacagaacttcccaaagtgagaaagctgtttgtaagtgtttgtccaaatttgagctgtgttgaggagttaggcagtttggagcagctatggttggatgtgaatatggaggactcatcaccgtgggtgcatgggcttcgagagcagtaccgccacctggatgtctacacgtggcctagagagtgagatgtgaagacccaactaaaagacagtagattggtagagacacaaggtaagggcattggctttgtatttgttgatacatatttttattctatcgttatctaaaatagtggaaacatattttaatttcattccaactttgcatattttcagccaaaatcatgcatgtctaatgttattctcacctgtacactttacattcattgatgttgcacactttgcatcattcttagtaaggagatcatcatatatattagacaaaatgtcaaactttcggtagttgttatgattaatttttgtacctatattactgaccttgtcacctaacactagtacagaaatccttaaactttgtgttgtaattattctcaatgtccataaccagtacagaaacaagtgttatagcattttataatctattatatcctaaagtacattaaacttcctacagacgcttctaagccatcacgtagcactcctacgaacactcctaagcctccacatgacattctaataaattaaagaaatttctaaaaattctgagaaaaacaaaaacatcttgtcatttatctttattaaatctagtgaaccaatcatttacaaccattagatctagtcgtcaacccgtgcgttgtatgggttattaaaatatttaagaaattcaattgtacatgtggttgaatacatgggttaaaatgattattttgcttAaaaaaatgttggaatggcggcattcggacatccggtctcttgtacttaaccatgatttgacttggaaaacagtgagggaagtctCcacggttcggatataatgatgattaatccAaaactaattaattaattcaattAAaaatactcaactacagtaccatgactatagctggccaaatgggtggcccggcccaacacgcacggccccactagtggcacgacccactaaggcacggcaactatagcaggccgtgcacgtggcccataaaaaattgaaaattgagggaaaaataatatgaagttaaaaaatgaataaagataggacaaacgtgaggaaaatttaggaaatataggaaatatattagaaaatatatggtaaaaataggataaaatatgaaaaaaaaatAaaaaaaatatgagaaaaatatggaaaaaattagaaaattgtagggaaaataaatgggcagctgggccgtgctcgtgccgacccgtcaacaggcatgccgtgccgtgtaagtccatgggctaaggtgctggcccaagcacgacacggacaaatgggccatgccggcacagcacacagtccgcccaacatctgttcctagtgtagggctcctaattaattaaggtttgtttggtgaaacaaaaaagccacctaaatgtctttgtattggttcaaattgattaatagttttgttcgtgttctacctgttaaaagaagaagaggatattgctgatcgacatgcctatgtatagtccatgtgtgtcttttccttatgccttttgtaatgcacgtgtattgtttggtaagttcaattccagaaaatatgattgttgaaaaactgatagcacatatattttcttttccttaattaagttattaaattaccaaaatacttatgtatatatacatccatgattaatttctgtgtgcttatttattttgtaggttgttaatcttgaagaatttgggctgtgcagtcacttgtaatatgtatttttgttttacctagttattggtctttcaaatattaaaaaaatgttatttttttaaaaataaataaaacaaaaatatcaaaaaagggaaaatgtcaaaaaaaatattttttctttagctcttgtaaaATatattgtcatgtttcgttagattttgcgtgtgtgtttcttttctatttattttttactgtaggtgtgtaggtaactccgcctatgtcatcgtaggtataactaaatgacatagccggtcccaagcccgAaaaaaggaggaGgggatagtttggtatatatgtgtgttgaaatgatgctccgttgctagatcattGggaattttctgcacttttattagattaatttcattttcagtgatggaatagttgtggaaacatttctggagactcatccaccctt
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CDS seq | atggcagcggtattagatgctttgattgtctcatgcatcaagaagttgcagtttatcattacagacaaggcaatactcattttaggggtagaagatgaacttgaagaactgcagcgaagaacagacgtcataagatcttctcttcaggatgctgaggcaaggaggatggaagattcagcagttgaaaaatggcttgaccagctaagagatgttatgtatgatgtcgatgatattattgatttggctagatttaaaggaagcatcctactagctgaccatccttcatcatcatcaagcaaaccaacacgttgcaattgcccttcgtgtcattgtaatatttggacacgtcatgaggttgctgttaagattagaagcctgaacaaaaagatagcgaacatttcaaatgatgaagtacttcaagatctcagacgtagaccgcatccgagaaatggttcgatatggacaccgataaaaacctccagcatagttgaacccaaccttgtgggtgaagaggtcatacttgcttgcagagaattggtggatttggttattgaaaataaggaaaagaaggattacaagcttggtattgtagggacaggaggagttggcaagacaacacttgctcagcaaatatataatgatgaaaaaataacagggaatttcgataaacatgcatgggtttgtgtttcaacagacagcacacaaacttctctattggaagaagttcttcggatcatgaaaattcgatatgggaaagcaaaatcagttgaagagctccaaaacaagctcaaatcagccattaaagagaagagttttttccttgtgctagatgatgtatgggaatctaatgcgtggactaattcacttcAaaaaccattgcatgctgcagccaaggggatagttatagtaactacgagaaatgaaaaagtagctcaggaaattaaagtggaccatacccataaagttcatttgatgtcagaaaatgtaggatgggatctactttggaagagcatgggcataaccgaagagaaacaagttcatcatctgcgggacatagggattgagattgttcaccaatgtggttatctcccactagcaataaagatcatcgccaaagttttaattagcaaagagaaaacaaatgatgaatggaaaaggatattgagcaacaatgacttcattgatgagcagaaaggccaactactagaagatacagcagtagaatactacaatgagctgatccatcggaacctccttcaactagacctttcatattttgacctaggtgggtgcaagatgcatggtctcttaaggcagcttgtttgctatttatcaagagaagaatgttttgttggagatccagaatcacaaaatggtaataaaatgagtaaaatgcgacgtgtttctgtggtgacagagaaggacacggtggtgttaccaagtatggataagaagcagtataaagtgaggacttacagaacttcatattccaagtcactgagagtttacaatccacttttcaagaggcttacatatctccgtgttttggatttgactggcacacttgtacagagcatcccaagtcacattggaaatttgattcatatgcgtttgattaatcttgatgggacaaacatatctcgtctcccagagtccattggtaaccttcaaaatcttcaagtactgaacctgcaaaggtgtaaatctttgtacaggcttcctttggcaaccacgaaactatgcaatttaaggcggcttggtcttcttgatacaccaataaataaggttccaaaagggataggaagactgcaattccttaatgatttggaaggatttcctattggaagtgtaacttacaataaaaaaatgcaagatggatggaatttggaagacttggctgatctttcacagttgaggcggcttgttatgataaaactagaaagatgtactccttgcagcagtgaagattcatttctcctaacaaacaaagaacatctgaaagttctatatctagaatgcactgaaccaacaaatgaagcatgttcagatgaacatgttaaacatgttgagaatatcttcgagcagctagtccctccacagaacttgaaagatctatctgttcTGAGATTCCTTGcaactgcaattaccaagatcggacccgaatttattgggcaatttccaagatccagggaagcagttgctttccccaagcttgaatggttgatcatcaatgatatgcccaactgggaggaatgggcctttactggagaagatgagatatcacttgcagcaatgaaggaaggaggaggggatggaactgctgtggccgaagaggaggagatatcacttgcagcaatgaatgaaggaggagaggatggaaccactgtgacggaaaagggggaagcctcatttccaaggttgtgtgtgctgccctctttgaagaggttggacattgataactgccccaagctgagggctctcccacaacagcttggacacgaggccaccagtttgaaagagctctcccttgtagcagcaagctgcttgaagtcggtgaaggaccttccatccctatctggtttcctttctgtttgtagatgtgaaggcctggagagggttacagaacttcccaaagtgagaaagctgtttgtaagtgtttgtccaaatttgagctgtgttgaggagttaggcagtttggagcagctatggttggatgtgaatatggaggactcatcaccgtgggtgcatgggcttcgagagcagtaccgccacctggatgtctacacgtggcctagagagtga
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Protein seq | MAAVLDALIVSCIKKLQFIITDKAILILGVEDELEELQRRTDVIRSSLQDAEARRMEDSAVEKWLDQLRDVMYDVDDIIDLARFKGSILLADHPSSSSSKPTRCNCPSCHCNIWTRHEVAVKIRSLNKKIANISNDEVLQDLRRRPHPRNGSIWTPIKTSSIVEPNLVGEEVILACRELVDLVIENKEKKDYKLGIVGTGGVGKTTLAQQIYNDEKITGNFDKHAWVCVSTDSTQTSLLEEVLRIMKIRYGKAKSVEELQNKLKSAIKEKSFFLVLDDVWESNAWTNSLQKPLHAAAKGIVIVTTRNEKVAQEIKVDHTHKVHLMSENVGWDLLWKSMGITEEKQVHHLRDIGIEIVHQCGYLPLAIKIIAKVLISKEKTNDEWKRILSNNDFIDEQKGQLLEDTAVEYYNELIHRNLLQLDLSYFDLGGCKMHGLLRQLVCYLSREECFVGDPESQNGNKMSKMRRVSVVTEKDTVVLPSMDKKQYKVRTYRTSYSKSLRVYNPLFKRLTYLRVLDLTGTLVQSIPSHIGNLIHMRLINLDGTNISRLPESIGNLQNLQVLNLQRCKSLYRLPLATTKLCNLRRLGLLDTPINKVPKGIGRLQFLNDLEGFPIGSVTYNKKMQDGWNLEDLADLSQLRRLVMIKLERCTPCSSEDSFLLTNKEHLKVLYLECTEPTNEACSDEHVKHVENIFEQLVPPQNLKDLSVLRFLATAITKIGPEFIGQFPRSREAVAFPKLEWLIINDMPNWEEWAFTGEDEISLAAMKEGGGDGTAVAEEEEISLAAMNEGGEDGTTVTEKGEASFPRLCVLPSLKRLDIDNCPKLRALPQQLGHEATSLKELSLVAASCLKSVKDLPSLSGFLSVCRCEGLERVTELPKVRKLFVSVCPNLSCVEELGSLEQLWLDVNMEDSSPWVHGLREQYRHLDVYTWPRE |
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Function | Putative disease resistance protein RGA4 [UniProtKB/Swiss-Prot:Q7XA39] |
Transcripts
Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
OsLima_11g0023750 | OsLima_11g0023750.01 | Chr11 | 29464312 | 29469522 | + | NAM | ||
CDS seq | atggcagcggtattagatgctttgattgtctcatgcatcaagaagttgcagtttatcattacagacaaggcaatactcattttaggggtagaagatgaacttgaagaactgcagcgaagaacagacgtcataagatcttctcttcaggatgctgaggcaaggaggatggaagattcagcagttgaaaaatggcttgaccagctaagagatgttatgtatgatgtcgatgatattattgatttggctagatttaaaggaagcatcctactagctgaccatccttcatcatcatcaagcaaaccaacacgttgcaattgcccttcgtgtcattgtaatatttggacacgtcatgaggttgctgttaagattagaagcctgaacaaaaagatagcgaacatttcaaatgatgaagtacttcaagatctcagacgtagaccgcatccgagaaatggttcgatatggacaccgataaaaacctccagcatagttgaacccaaccttgtgggtgaagaggtcatacttgcttgcagagaattggtggatttggttattgaaaataaggaaaagaaggattacaagcttggtattgtagggacaggaggagttggcaagacaacacttgctcagcaaatatataatgatgaaaaaataacagggaatttcgataaacatgcatgggtttgtgtttcaacagacagcacacaaacttctctattggaagaagttcttcggatcatgaaaattcgatatgggaaagcaaaatcagttgaagagctccaaaacaagctcaaatcagccattaaagagaagagttttttccttgtgctagatgatgtatgggaatctaatgcgtggactaattcacttcAaaaaccattgcatgctgcagccaaggggatagttatagtaactacgagaaatgaaaaagtagctcaggaaattaaagtggaccatacccataaagttcatttgatgtcagaaaatgtaggatgggatctactttggaagagcatgggcataaccgaagagaaacaagttcatcatctgcgggacatagggattgagattgttcaccaatgtggttatctcccactagcaataaagatcatcgccaaagttttaattagcaaagagaaaacaaatgatgaatggaaaaggatattgagcaacaatgacttcattgatgagcagaaaggccaactactagaagatacagcagtagaatactacaatgagctgatccatcggaacctccttcaactagacctttcatattttgacctaggtgggtgcaagatgcatggtctcttaaggcagcttgtttgctatttatcaagagaagaatgttttgttggagatccagaatcacaaaatggtaataaaatgagtaaaatgcgacgtgtttctgtggtgacagagaaggacacggtggtgttaccaagtatggataagaagcagtataaagtgaggacttacagaacttcatattccaagtcactgagagtttacaatccacttttcaagaggcttacatatctccgtgttttggatttgactggcacacttgtacagagcatcccaagtcacattggaaatttgattcatatgcgtttgattaatcttgatgggacaaacatatctcgtctcccagagtccattggtaaccttcaaaatcttcaagtactgaacctgcaaaggtgtaaatctttgtacaggcttcctttggcaaccacgaaactatgcaatttaaggcggcttggtcttcttgatacaccaataaataaggttccaaaagggataggaagactgcaattccttaatgatttggaaggatttcctattggaagtgtaacttacaataaaaaaatgcaagatggatggaatttggaagacttggctgatctttcacagttgaggcggcttgttatgataaaactagaaagatgtactccttgcagcagtgaagattcatttctcctaacaaacaaagaacatctgaaagttctatatctagaatgcactgaaccaacaaatgaagcatgttcagatgaacatgttaaacatgttgagaatatcttcgagcagctagtccctccacagaacttgaaagatctatctgttcTGAGATTCCTTGcaactgcaattaccaagatcggacccgaatttattgggcaatttccaagatccagggaagcagttgctttccccaagcttgaatggttgatcatcaatgatatgcccaactgggaggaatgggcctttactggagaagatgagatatcacttgcagcaatgaaggaaggaggaggggatggaactgctgtggccgaagaggaggagatatcacttgcagcaatgaatgaaggaggagaggatggaaccactgtgacggaaaagggggaagcctcatttccaaggttgtgtgtgctgccctctttgaagaggttggacattgataactgccccaagctgagggctctcccacaacagcttggacacgaggccaccagtttgaaagagctctcccttgtagcagcaagctgcttgaagtcggtgaaggaccttccatccctatctggtttcctttctgtttgtagatgtgaaggcctggagagggttacagaacttcccaaagtgagaaagctgtttgtaagtgtttgtccaaatttgagctgtgttgaggagttaggcagtttggagcagctatggttggatgtgaatatggaggactcatcaccgtgggtgcatgggcttcgagagcagtaccgccacctggatgtctacacgtggcctagagagtga
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Protein seq | MAAVLDALIVSCIKKLQFIITDKAILILGVEDELEELQRRTDVIRSSLQDAEARRMEDSAVEKWLDQLRDVMYDVDDIIDLARFKGSILLADHPSSSSSKPTRCNCPSCHCNIWTRHEVAVKIRSLNKKIANISNDEVLQDLRRRPHPRNGSIWTPIKTSSIVEPNLVGEEVILACRELVDLVIENKEKKDYKLGIVGTGGVGKTTLAQQIYNDEKITGNFDKHAWVCVSTDSTQTSLLEEVLRIMKIRYGKAKSVEELQNKLKSAIKEKSFFLVLDDVWESNAWTNSLQKPLHAAAKGIVIVTTRNEKVAQEIKVDHTHKVHLMSENVGWDLLWKSMGITEEKQVHHLRDIGIEIVHQCGYLPLAIKIIAKVLISKEKTNDEWKRILSNNDFIDEQKGQLLEDTAVEYYNELIHRNLLQLDLSYFDLGGCKMHGLLRQLVCYLSREECFVGDPESQNGNKMSKMRRVSVVTEKDTVVLPSMDKKQYKVRTYRTSYSKSLRVYNPLFKRLTYLRVLDLTGTLVQSIPSHIGNLIHMRLINLDGTNISRLPESIGNLQNLQVLNLQRCKSLYRLPLATTKLCNLRRLGLLDTPINKVPKGIGRLQFLNDLEGFPIGSVTYNKKMQDGWNLEDLADLSQLRRLVMIKLERCTPCSSEDSFLLTNKEHLKVLYLECTEPTNEACSDEHVKHVENIFEQLVPPQNLKDLSVLRFLATAITKIGPEFIGQFPRSREAVAFPKLEWLIINDMPNWEEWAFTGEDEISLAAMKEGGGDGTAVAEEEEISLAAMNEGGEDGTTVTEKGEASFPRLCVLPSLKRLDIDNCPKLRALPQQLGHEATSLKELSLVAASCLKSVKDLPSLSGFLSVCRCEGLERVTELPKVRKLFVSVCPNLSCVEELGSLEQLWLDVNMEDSSPWVHGLREQYRHLDVYTWPRE
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Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
Leaf | Root | Panicle | |
FPKM | 0.067782 | 1.569802 | None |
Homologues
Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
---|---|---|---|---|---|
Leaf | Root | Panicle | |||
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0676500 | RBH | 0.0 | 0.000000 | 3.153747 |
Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g45130 | RBH | 0.0 | 0.000000 | 0.139361 |
Nipponbare | IRGSP 1.0 | RAP-db | Os11g0676500 | RBH | None | None | None |
Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0023840 | SBH | 0.069281 | 0.000000 | 1.847165 |
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0023440 | SBH | 0.068956 | 0.290150 | 0.153786 |
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0023090 | SBH | 0.067817 | 0.359010 | 0.315617 |
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0023030 | SBH | 0.081510 | 0.111143 | None |
PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0023130 | SBH | 0.0 | 2.865955 | 0.108137 |
Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0419900 | SBH | 0.593919 | 1.271223 | 0 |
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0023950 | SBH | 0.170500 | 0.197489 | 0.487290 |
Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0430900 | RBH | 0.8587925 | 169.4659275 | 0.384886 |
LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0022320 | SBH | 0.694426 | 0.0 | None |
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0023280 | SBH | 2.088418 | 9.239458 | None |
LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0022970 | RBH | 0.0 | 0.0 | 0.0 |
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0023290 | RBH | 0.0 | 0.000000 | None |
N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G023340 | RBH | 0.478029 | 16.708927 | 1.419603 |
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0023770 | RBH | 1.450534 | 236.263718 | 0.217790 |