Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_11g0014470 | OGI:11051090 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr11:18895942-18898599 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atgaatcaacttgagggcaccatccctgagggttttggcaggctcagtggtctcaaggacattcatctgggtgtaaaccacctctcaggcatgatcccaacaagcatctttaatatttcctcgctaagtcgcttcggtgtacccatgaaccagttgcatggtttgctcccctgtgacttgggggttcacctaccaaagctccagtacctcctcctaggctataaccactttacaggaagccttccagcctctatcgccaattcaactgagatatattccctcgacatatcgttcaacaacttcagtggaagcatacctccagagattggaacactttgcccagacttcctctcatttgatacaaatcagctcatagcaactactgctgaagactggaaattcatgacattcttgacaaactgcacacgcctgcgtattcttgacctccaggacaacatgctaggtggcgtgctgccaacctctgtttccaacctttcagcacaactccaactactatatgttggattcaacaagatctcaggaaatataccatttggcatcagcaacctggttgggctaaatcagttgcaactcgctaataaccaatttactggtaccttgcctgataacattggaaggctaagttttctacatctcttgggcatcgataataacctattgacagggttcattccatcatcagtgggaaatttaacacagctcttacgtctttccatggataacaacatgcttgagggacctctcccaacaagcctagggaacctgcagaagataactctagccttatttgcaagcaataaatttacaggaccattgcccagagagatctttaacttatcttccctgtcatatgctctggttttgtcagggaactattttgttggtcctcttcctcctgaagttggcagcttgacaaatcttgcatacttgtacatatccagcaacaacttatcagggccactacctaacgaacttagtaattgccaaagcttgatagacctccggctggaccaaaacttattcagtggtaacattccagcaactttcagcaaactgcggggcttgacattgctgactttaaccaaaaacacactctcaggagtgattcctcaagagttgggcctcatggatggcatgaaagaattgtatcttgcacacaacaacttatctggtcatatcccaggaagcattggaaacatgacatcattgaaccgtctagatctctctttcaaccatcttgatggtgaagttccatcaaagggagtgttcagtaacatgacagggttcgtgtttaatgggaatttggggctctgcggtggtatcccagaattaggcttgcccccatgtccgctagtgtccatgggacacagcctaaggaaaagtcatcttgtcttcagagtagttatcccagttgttggcaccattctgttcttaagtttgatgcttgctatctttgtcttaagaaagaaaccaaaagctcaatctaaaaagacgataggatttcaattgatagatgataagtatcctagagtttcttatgctgagttggtccaaggaacaaatggctttgccacaaacagcttgatgggaagaggaagatatggatcagtgtataagtgtggtttgctgctaaaaagtatgatgaccacggttgctgtgaaagtgtttgatcttcaacaatctggttcttccaaaagttttctagctgagtgtgaggcactaagtaagatccgccatcgtaatttgattaatgtcataacttgctgttcaagctctgatccaaagcagaatgacttcaaggccattgtttttgagttcatgcctaatgggagcctggataggtggttacatctagatgtgacggcatcacaaccaccacaaggtttgacactgatgcagagattgaacattaccgttgatgttgctgatgcactagattatttgcacaacaactgcgatccacccatagttcactgtgacttgaagccaagtaacattcttcttgatgaagatttagttgctcatgttggtgactttggccttgcaaagattcttgctgattcagaaggtgaacaaccgattaattcaaagagctctattggaatacgaggaacgattggatatgtcgctccaggtaattcattttctataatattttaatcttgtaaacgaaactgcatgcaaaatcactatttttgtctatgcaacatagagtatggggaaggcaggcaagtttctccctgtggagactcgtacagctttggaattgtcatcctcgagctgtttacaggcatggtacctactcatgacatgttcagagatgggttaaccttgcagaagcatgtcgagaacacatttccagggattcttatgaagattgtcgatccaatactactgtctattgaaggagtttatacaagtcatttgccccctggaagaaatgcagtggaacatatgaaccatgccatattgtctgtcatgaaaatagccctctcatgcagcagacaggcaccaacagagaggatgaggatcagagatgcagcagcaaatttgcgcagggtaagggatagccatgtaagaagaaacgaggagcatctagaactgtgcagtgatatcactaatctagccagtgcttga
More
|
||||||||||
| CDS seq | atgaatcaacttgagggcaccatccctgagggttttggcaggctcagtggtctcaaggacattcatctgggtgtaaaccacctctcaggcatgatcccaacaagcatctttaatatttcctcgctaagtcgcttcggtgtacccatgaaccagttgcatggtttgctcccctgtgacttgggggttcacctaccaaagctccagtacctcctcctaggctataaccactttacaggaagccttccagcctctatcgccaattcaactgagatatattccctcgacatatcgttcaacaacttcagtggaagcatacctccagagattggaacactttgcccagacttcctctcatttgatacaaatcagctcatagcaactactgctgaagactggaaattcatgacattcttgacaaactgcacacgcctgcgtattcttgacctccaggacaacatgctagggttcattccatcatcagtgggaaatttaacacagctcttacgtctttccatggataacaacatgcttgagggacctctcccaacaagcctagggaacctgcagaagataactctagccttatttgcaagcaataaatttacaggaccattgcccagagagatctttaacttatcttccctgtcatatgctctggttttgtcagggaactattttgttggtcctcttcctcctgaagttggcagcttgacaaatcttgcatacttgtacatatccagcaacaacttatcagggccactacctaacgaacttagtaattgccaaagcttgatagacctccggctggaccaaaacttattcagtggtaacattccagcaactttcagcaaactgcggggcttgacattgctgactttaaccaaaaacacactctcaggagtgattcctcaagagttgggcctcatggatggcatgaaagaattgtatcttgcacacaacaacttatctggtcatatcccaggaagcattggaaacatgacatcattgaaccgtctagatctctctttcaaccatcttgatggtgaagttccatcaaagggagtgttcagtaacatgacagggttcgtgtttaatgggaatttggggctctgcggtggtatcccagaattaggcttgcccccatgtccgctagtgtccatgggacacagcctaaggaaaagtcatcttgtcttcagagtagttatcccagttgttggcaccattctgttcttaagtttgatgcttgctatctttgtcttaagaaagaaaccaaaagctcaatctaaaaagacgataggatttcaattgatagatgataagtatcctagagtttcttatgctgagttggtccaaggaacaaatggctttgccacaaacagcttgatgggaagaggaagatatggatcagtgtataagtgtggtttgctgctaaaaagtatgatgaccacggttgctgtgaaagtgtttgatcttcaacaatctggttcttccaaaagttttctagctgagtgtgaggcactaagtaagatccgccatcgtaatttgattaatgtcataacttgctgttcaagctctgatccaaagcagaatgacttcaaggccattgtttttgagttcatgcctaatgggagcctggataggtggttacatctagatgtgacggcatcacaaccaccacaaggtttgacactgatgcagagattgaacattaccgttgatgttgctgatgcactagattatttgcacaacaactgcgatccacccatagttcactgtgacttgaagccaagtaacattcttcttgatgaagatttagttgctcatgttggtgactttggccttgcaaagattcttgctgattcagaaggtgaacaaccgattaattcaaagagctctattggaatacgaggaacgattggatatgtcgctccagagtatggggaaggcaggcaagtttctccctgtggagactcgtacagctttggaattgtcatcctcgagctgtttacaggcatggtacctactcatgacatgttcagagatgggttaaccttgcagaagcatgtcgagaacacatttccagggattcttatgaagattgtcgatccaatactactgtctattgaaggagtttatacaagtcatttgccccctggaagaaatgcagtggaacatatgaaccatgccatattgtctgtcatgaaaatagccctctcatgcagcagacaggcaccaacagagaggatgaggatcagagatgcagcagcaaatttgcgcagggtaagggatagccatgtaagaagaaacgaggagcatctagaactgtgcagtgatatcactaatctagccagtgcttga
More
|
||||||||||
| Protein seq | MNQLEGTIPEGFGRLSGLKDIHLGVNHLSGMIPTSIFNISSLSRFGVPMNQLHGLLPCDLGVHLPKLQYLLLGYNHFTGSLPASIANSTEIYSLDISFNNFSGSIPPEIGTLCPDFLSFDTNQLIATTAEDWKFMTFLTNCTRLRILDLQDNMLGFIPSSVGNLTQLLRLSMDNNMLEGPLPTSLGNLQKITLALFASNKFTGPLPREIFNLSSLSYALVLSGNYFVGPLPPEVGSLTNLAYLYISSNNLSGPLPNELSNCQSLIDLRLDQNLFSGNIPATFSKLRGLTLLTLTKNTLSGVIPQELGLMDGMKELYLAHNNLSGHIPGSIGNMTSLNRLDLSFNHLDGEVPSKGVFSNMTGFVFNGNLGLCGGIPELGLPPCPLVSMGHSLRKSHLVFRVVIPVVGTILFLSLMLAIFVLRKKPKAQSKKTIGFQLIDDKYPRVSYAELVQGTNGFATNSLMGRGRYGSVYKCGLLLKSMMTTVAVKVFDLQQSGSSKSFLAECEALSKIRHRNLINVITCCSSSDPKQNDFKAIVFEFMPNGSLDRWLHLDVTASQPPQGLTLMQRLNITVDVADALDYLHNNCDPPIVHCDLKPSNILLDEDLVAHVGDFGLAKILADSEGEQPINSKSSIGIRGTIGYVAPEYGEGRQVSPCGDSYSFGIVILELFTGMVPTHDMFRDGLTLQKHVENTFPGILMKIVDPILLSIEGVYTSHLPPGRNAVEHMNHAILSVMKIALSCSRQAPTERMRIRDAAANLRRVRDSHVRRNEEHLELCSDITNLASA |
||||||||||
| Function | Probable LRR receptor-like serine/threonine-protein kinase At3g47570 [UniProtKB/Swiss-Prot:C0LGP4] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_11g0014470 | OsLima_11g0014470.01 | Chr11 | 18895942 | 18898599 | + | NAM | ||
| CDS seq | atgaatcaacttgagggcaccatccctgagggttttggcaggctcagtggtctcaaggacattcatctgggtgtaaaccacctctcaggcatgatcccaacaagcatctttaatatttcctcgctaagtcgcttcggtgtacccatgaaccagttgcatggtttgctcccctgtgacttgggggttcacctaccaaagctccagtacctcctcctaggctataaccactttacaggaagccttccagcctctatcgccaattcaactgagatatattccctcgacatatcgttcaacaacttcagtggaagcatacctccagagattggaacactttgcccagacttcctctcatttgatacaaatcagctcatagcaactactgctgaagactggaaattcatgacattcttgacaaactgcacacgcctgcgtattcttgacctccaggacaacatgctagggttcattccatcatcagtgggaaatttaacacagctcttacgtctttccatggataacaacatgcttgagggacctctcccaacaagcctagggaacctgcagaagataactctagccttatttgcaagcaataaatttacaggaccattgcccagagagatctttaacttatcttccctgtcatatgctctggttttgtcagggaactattttgttggtcctcttcctcctgaagttggcagcttgacaaatcttgcatacttgtacatatccagcaacaacttatcagggccactacctaacgaacttagtaattgccaaagcttgatagacctccggctggaccaaaacttattcagtggtaacattccagcaactttcagcaaactgcggggcttgacattgctgactttaaccaaaaacacactctcaggagtgattcctcaagagttgggcctcatggatggcatgaaagaattgtatcttgcacacaacaacttatctggtcatatcccaggaagcattggaaacatgacatcattgaaccgtctagatctctctttcaaccatcttgatggtgaagttccatcaaagggagtgttcagtaacatgacagggttcgtgtttaatgggaatttggggctctgcggtggtatcccagaattaggcttgcccccatgtccgctagtgtccatgggacacagcctaaggaaaagtcatcttgtcttcagagtagttatcccagttgttggcaccattctgttcttaagtttgatgcttgctatctttgtcttaagaaagaaaccaaaagctcaatctaaaaagacgataggatttcaattgatagatgataagtatcctagagtttcttatgctgagttggtccaaggaacaaatggctttgccacaaacagcttgatgggaagaggaagatatggatcagtgtataagtgtggtttgctgctaaaaagtatgatgaccacggttgctgtgaaagtgtttgatcttcaacaatctggttcttccaaaagttttctagctgagtgtgaggcactaagtaagatccgccatcgtaatttgattaatgtcataacttgctgttcaagctctgatccaaagcagaatgacttcaaggccattgtttttgagttcatgcctaatgggagcctggataggtggttacatctagatgtgacggcatcacaaccaccacaaggtttgacactgatgcagagattgaacattaccgttgatgttgctgatgcactagattatttgcacaacaactgcgatccacccatagttcactgtgacttgaagccaagtaacattcttcttgatgaagatttagttgctcatgttggtgactttggccttgcaaagattcttgctgattcagaaggtgaacaaccgattaattcaaagagctctattggaatacgaggaacgattggatatgtcgctccagagtatggggaaggcaggcaagtttctccctgtggagactcgtacagctttggaattgtcatcctcgagctgtttacaggcatggtacctactcatgacatgttcagagatgggttaaccttgcagaagcatgtcgagaacacatttccagggattcttatgaagattgtcgatccaatactactgtctattgaaggagtttatacaagtcatttgccccctggaagaaatgcagtggaacatatgaaccatgccatattgtctgtcatgaaaatagccctctcatgcagcagacaggcaccaacagagaggatgaggatcagagatgcagcagcaaatttgcgcagggtaagggatagccatgtaagaagaaacgaggagcatctagaactgtgcagtgatatcactaatctagccagtgcttga
More
|
|||||||
| Protein seq | MNQLEGTIPEGFGRLSGLKDIHLGVNHLSGMIPTSIFNISSLSRFGVPMNQLHGLLPCDLGVHLPKLQYLLLGYNHFTGSLPASIANSTEIYSLDISFNNFSGSIPPEIGTLCPDFLSFDTNQLIATTAEDWKFMTFLTNCTRLRILDLQDNMLGFIPSSVGNLTQLLRLSMDNNMLEGPLPTSLGNLQKITLALFASNKFTGPLPREIFNLSSLSYALVLSGNYFVGPLPPEVGSLTNLAYLYISSNNLSGPLPNELSNCQSLIDLRLDQNLFSGNIPATFSKLRGLTLLTLTKNTLSGVIPQELGLMDGMKELYLAHNNLSGHIPGSIGNMTSLNRLDLSFNHLDGEVPSKGVFSNMTGFVFNGNLGLCGGIPELGLPPCPLVSMGHSLRKSHLVFRVVIPVVGTILFLSLMLAIFVLRKKPKAQSKKTIGFQLIDDKYPRVSYAELVQGTNGFATNSLMGRGRYGSVYKCGLLLKSMMTTVAVKVFDLQQSGSSKSFLAECEALSKIRHRNLINVITCCSSSDPKQNDFKAIVFEFMPNGSLDRWLHLDVTASQPPQGLTLMQRLNITVDVADALDYLHNNCDPPIVHCDLKPSNILLDEDLVAHVGDFGLAKILADSEGEQPINSKSSIGIRGTIGYVAPEYGEGRQVSPCGDSYSFGIVILELFTGMVPTHDMFRDGLTLQKHVENTFPGILMKIVDPILLSIEGVYTSHLPPGRNAVEHMNHAILSVMKIALSCSRQAPTERMRIRDAAANLRRVRDSHVRRNEEHLELCSDITNLASA
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0490200 | RBH | 0.075493 | 0.000000 | 0.000000 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g29790 | RBH | 0.103580 | 0.054130 | 0.148126 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0490200 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0014330 | RBH | 0.064509 | 0.0 | 0.196107 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0014320 | RBH | 0.0 | 0.937035 | 0.295630 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0004950 | SBH | 0.351912 | 0.244407 | 1.702016 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0014060 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0014350 | RBH | 0.645249 | 2.135500 | 1.048938 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0268400 | RBH | 0.3968795 | 1.2657175 | 0.8301995 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0014560 | RBH | 0.102310 | 0.0 | 0.994583 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0281000 | RBH | 0.6965635 | 1.054025 | 0.994688 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0014460 | RBH | 0.220429 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0014100 | RBH | 0.990499 | 2.229682 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0013950 | RBH | 0.056996 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0004850 | SBH | 0.056974 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G017720 | SBH | 0.042523 | 0.0 | 0.112282 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0014250 | RBH | 0.394882 | 0.000000 | 0.592286 |
