Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_11g0008170 | OGI:11020870 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr11:7132821-7137826 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | tcatagccagccggtcaacatgttccctcccaaggtcagctcggtcagcttgcttaggttaccgatctccggtggtatcacgccggagaacgagttattcgaaaggtatagcttcttgagccgccagagccggccgatctccctggggatctcgccgtcgagccggttattgtgcaaccagagctccttcagcctctgcgccttgctgatcgccggcgagattcttccggtgaacccattgttcgaaacatcaatgatctccgcagattgttgtccccacacccacgctgggaggctgccggtgagcctgttactgtgaatccggaagatcaccaaatggtggcaggcggagtattcctccgggagctcgccggagaagctgttccggatggtgagaaggtactggagattcttgccgtggcacagatacctcgggaatgggccagagaatgcattctcggagatatcgatgccgtaaagcggcgagaagcggccgaagttcgccgggaactcgccggagaaattgttctcatagacagcaaatctcttcaggaaccgtagctccccccacgctgccgggatcggcccagatagattgttccactggagatgtatcacctcgaagttcctgagcaccgcaagagacgccgggatctcgccgctgagcttgttcccggagacgtcgagctcgcgtagcccggtcagcttcccgagctccggtgggagctcgcctgtgaggttattactatacagctgaatgctccacaactcgcagaggttgccgatggccgccgggattccgccggtgagatagttcttcgacatgtccagcgtccgcagcgccgtgagcccgaagatggattcaggtatctcccctgtcaggtagcagctcgacaagtagagatgcgtcaacttcttgaggtttccgatgctcggcggagtctcgcctcggtcgtagctgttctcgccgacggcgaggatgacgagaccggacaggttgccgacccacgccgggaacctcccggacaagcaattgttcgcgacgtcgagggtgtcgagcgccgccagcttcgccgacaagttcggcagctcgccggtgaggccgttgcaggagaggttgaggaactggagctgcgtgcagttgctcagctcaggaggcactccccccgaaatggtgttgtcgccgagatcgagccgtgttagggccgcgagggcgccgatcgccggcgatatcctgccggagaggttcatgctcgccagcgagatctcggtgaccgtgccggtcaccggatcacactggacgccgaggtagctgcacggcgaggtggtggcgttcgtcgtccatgattgaagattgtcgagagggtcaatcaagctggccttgaattggacaagtgcctgaatctgaatttggtggtcagatcggcagcttgagctgagtgatgaggagaggagtatgataagtgggagatggcagacaaggatgtgccttctcattgcatgcaggagatggtgttcaggattgtcctgctgttggttcagctcagctgatctgaatgaagaagagaggctacttatcagtttaggatacaactaatttatggtgctatttggtagccctacatcatcatgtcattgtagaaactattttgatacctcgagaggatatctcctcgttgtttgcatgtcacttaaatagttatgaaaaaatatgaaaaaatttaagaagatatatgaacatgtgatatatcacttcaaattcaacttctacttctcgcaacgaaaaaaacaaatttaactacaactagttaatgtatattcacactcaattttgtttttttcgttgcgagatatagaagttggatttaaactcgcatgtttgtagagtgatatatcacatattattacatcttctcaatttttttaattttttataactatttgaactattttttataacatgcaaataacgagggaatatccctcgagggatcaaaatcaactccccatgttattgatacgtggagtaaagattctatgaaacaaaaggtcaacaatctatagacttggggatagagcgggtcttcagtgagatttggggcatccggattttatatccgtataaacacatcattatcatcttggacatgcagagattggtatgctcggcattatatccatcccggtctttactcttttgcttcctattcagattaaagatgtcaacccaaacatggaaagctgtatataaatagaacactttaaccatacgcatagttggtcaactttaaagatatatcccatatttatgtcaccgacaattctcaccattgtcaacaagtcgttttgactttggttaaaggcaaactactctaaatttgattaggtttgtaaataaatatactaatatttacaacacgaattagtgtcattaaatcaataatttaatatatttttataatatatttgtcttgggttgaaaatatttatttttctactagaaaaaatgctcgtgcgttgcaataggtgaatgttattttaatattattattattgttatacaatttagttaaagtgaaatatattatgggaattcgcttggatatatattctgtttttagaaaatcatgagctgcaattaggaatccgatcgtctcaagttagcatgcgagttgttttaagagatttcttatacgaatccttctatatttctaaaagcaaacagatttagaaactgactcaaatatgaatatgtatttccaaaggcaaatgaacttagaaaccgacttatacacgaatgatgtaccaaagtaccggtaaaaacatctttaatatttataatagtagagataaacttggttaaacttgaaacaatttgaccgaagttaaaatgacttataatatgaaacaggggagtactgaattaatcattaattagtcaagtaatgggtcaaaattgcctgagcactcattgcagaatgtaatgggggtttaatgatgacatagagagtctgggaagaaaatatggtaagggcaattttagtgggatatgctttaccagttagtcttctagtgtggatagctttttttttcccttaaaagaatgtcccgctcgtttcttccatgcatcaaaatagttatgatttttttaaaaaatatttggatattatatatcaatatatgatatgtcactccacgatgatgcatgtttaaatttgacctatacaattcaaatatgattgtgaatgttacacgtactattcaaaattatatttgactttttctcaatttctataggttgaatttaaacttgtgtatttataaagatgtatactacatattgatttatgttgtcaatttttttataattttttaaccaaaaggcaggagttctgctagtccaatattaagaagaaaagagttcttcaccaataacaacatcgatatcacagtggcttcgagaagggcttacgagctgctccctccatttcgaaatgtatgacgtcgttgacttttcacataatattttaccattcgtgttattaaaaaaatatataaatattgttaatcttgttatgacttattttatcatcaaatgaagtataatcataacttataattttaaatatatatttgtactaaatttttaaataagataaatggttaaacgttgtgtggaaattcaatggcgtcatacatatacatacatatacattttaaaaggaggtaggattttacccgtgattatcaaaaacacgacttaataaacctccacagccagctaggaaactaacaagtgtcgattcaagtattgcactagtcagatacgcaactggttcttcatttctttccacctaatggaagactcttctgtttctttcgagtcaaatactcaaatgttccccgagtggcgagtaagccccccacaaatttcttttttttttcatccttaattatgatgtctggttctcccaccagcttgccaccactccgaaattcctgcgtgttcatctggatgcacgaccggttgtaaatctctccaaattgcgacaagatttgacactactttttgtatactcacattccttggcaagatgaatccacaatttcaaaggcttcatgccacatagcaaatccagtatattcacgccagtgtctacagagcaaaatttcagccattagcgtgtgtttttttttttttggagcaagaggcaaccgaagtttatgttcgggcccatccactgacttccacaagtttttgaattttatttgaggaaacgagccatggaattgtaccacggatttttttataatggattcgttaatctggcctttatatccacgaaaaatatacatagcgaaaagaatataaggatactaagactcatatctccacgagaggagaacacataaccaaagaaagaacaaacctactaccttggcacacccatggttcacgagtggaagttgtctagttgtcgcagtccctagtgcaccgtcgttgtgtacctccgatgttgccatcttcatctgcttcaggtgagttcacgcctttcatcagtcgtcatctagtcataactagccgaccagacgcgaaccgataggatccgtttttgcttcgccggatcctaggcctcccccatccatagggctaccgccgtcatcgggatcctcttccgcctctcggactcacatcctgccgccgcccctagggccgcggcctctgccgaggtccacaaatcttgccgaaatctcagtcctcctccgccactgccgaggatatccttttccacccggactcccaagcctccgtcacccctagggccgccgttgtcaacgagattcacccctgtctaaactgcctcctcctcgccgagaaccttgcacagttacatcggcactcaggccactactacccctagggctgccgccaccattgaggaggtccttttcatccggactcctaggtcgctgctgctgccttctccttgccgaggactggccat
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| CDS seq | atgagaaggcacatccttgtctgccatctcccacttatcatactcctctcctcatcactcagctcaagctgccgatctgaccaccaaattcagattcaggcacttgtccaattcaaggccagcttgattgaccctctcgacaatcttcaatcatggacgacgaacgccaccacctcgccgtgcagctacctcggcgtccagtgtgatccggtgaccggcacggtcaccgagatctcgctggcgagcatgaacctctccggcaggatatcgccggcgatcggcgccctcgcggccctaacacggctcgatctcggcgacaacaccatttcggggggagtgcctcctgagctgagcaactgcacgcagctccagttcctcaacctctcctgcaacggcctcaccggcgagctgccgaacttgtcggcgaagctggcggcgctcgacaccctcgacgtcgcgaacaattgcttgtccgggaggttcccggcgtgggtcggcaacctgtccggtctcgtcatcctcgccgtcggcgagaacagctacgaccgaggcgagactccgccgagcatcggaaacctcaagaagttgacgcatctctacttgtcgagctgctacctgacaggggagatacctgaatccatcttcgggctcacggcgctgcggacgctggacatgtcgaagaactatctcaccggcggaatcccggcggccatcggcaacctctgcgagttgtggagcattcagctgtatagtaataacctcacaggcgagctcccaccggagctcgggaagctgaccgggctacgcgagctcgacgtctccgggaacaagctcagcggcgagatcccggcgtctcttgcggtgctcaggaacttcgaggtgatacatctccagtggaacaatctatctgggccgatcccggcagcgtggggggagctacggttcctgaagagatttgctgtctatgagaacaatttctccggcgagttcccggcgaacttcggccgcttctcgccgctttacggcatcgatatctccgagaatgcattctctggcccattcccgaggtatctgtgccacggcaagaatctccagtaccttctcaccatccggaacagcttctccggcgagctcccggaggaatactccgcctgccaccatttggtgatcttccggattcacagtaacaggctcaccggcagcctcccagcgtgggtgtggggacaacaatctgcggagatcattgatgtttcgaacaatgggttcaccggaagaatctcgccggcgatcagcaaggcgcagaggctgaaggagctctggttgcacaataaccggctcgacggcgagatccccagggagatcggccggctctggcggctcaagaagctatacctttcgaataactcgttctccggcgtgataccaccggagatcggtaacctaagcaagctgaccgagctgaccttgggagggaacatgttgaccggctggctatga
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| Protein seq | MRRHILVCHLPLIILLSSSLSSSCRSDHQIQIQALVQFKASLIDPLDNLQSWTTNATTSPCSYLGVQCDPVTGTVTEISLASMNLSGRISPAIGALAALTRLDLGDNTISGGVPPELSNCTQLQFLNLSCNGLTGELPNLSAKLAALDTLDVANNCLSGRFPAWVGNLSGLVILAVGENSYDRGETPPSIGNLKKLTHLYLSSCYLTGEIPESIFGLTALRTLDMSKNYLTGGIPAAIGNLCELWSIQLYSNNLTGELPPELGKLTGLRELDVSGNKLSGEIPASLAVLRNFEVIHLQWNNLSGPIPAAWGELRFLKRFAVYENNFSGEFPANFGRFSPLYGIDISENAFSGPFPRYLCHGKNLQYLLTIRNSFSGELPEEYSACHHLVIFRIHSNRLTGSLPAWVWGQQSAEIIDVSNNGFTGRISPAISKAQRLKELWLHNNRLDGEIPREIGRLWRLKKLYLSNNSFSGVIPPEIGNLSKLTELTLGGNMLTGWL |
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| Function | Receptor protein-tyrosine kinase CEPR2 [UniProtKB/Swiss-Prot:Q9C7T7] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_11g0008170 | OsLima_11g0008170.01 | Chr11 | 7132821 | 7137826 | - | NAM | ||
| CDS seq | atgagaaggcacatccttgtctgccatctcccacttatcatactcctctcctcatcactcagctcaagctgccgatctgaccaccaaattcagattcaggcacttgtccaattcaaggccagcttgattgaccctctcgacaatcttcaatcatggacgacgaacgccaccacctcgccgtgcagctacctcggcgtccagtgtgatccggtgaccggcacggtcaccgagatctcgctggcgagcatgaacctctccggcaggatatcgccggcgatcggcgccctcgcggccctaacacggctcgatctcggcgacaacaccatttcggggggagtgcctcctgagctgagcaactgcacgcagctccagttcctcaacctctcctgcaacggcctcaccggcgagctgccgaacttgtcggcgaagctggcggcgctcgacaccctcgacgtcgcgaacaattgcttgtccgggaggttcccggcgtgggtcggcaacctgtccggtctcgtcatcctcgccgtcggcgagaacagctacgaccgaggcgagactccgccgagcatcggaaacctcaagaagttgacgcatctctacttgtcgagctgctacctgacaggggagatacctgaatccatcttcgggctcacggcgctgcggacgctggacatgtcgaagaactatctcaccggcggaatcccggcggccatcggcaacctctgcgagttgtggagcattcagctgtatagtaataacctcacaggcgagctcccaccggagctcgggaagctgaccgggctacgcgagctcgacgtctccgggaacaagctcagcggcgagatcccggcgtctcttgcggtgctcaggaacttcgaggtgatacatctccagtggaacaatctatctgggccgatcccggcagcgtggggggagctacggttcctgaagagatttgctgtctatgagaacaatttctccggcgagttcccggcgaacttcggccgcttctcgccgctttacggcatcgatatctccgagaatgcattctctggcccattcccgaggtatctgtgccacggcaagaatctccagtaccttctcaccatccggaacagcttctccggcgagctcccggaggaatactccgcctgccaccatttggtgatcttccggattcacagtaacaggctcaccggcagcctcccagcgtgggtgtggggacaacaatctgcggagatcattgatgtttcgaacaatgggttcaccggaagaatctcgccggcgatcagcaaggcgcagaggctgaaggagctctggttgcacaataaccggctcgacggcgagatccccagggagatcggccggctctggcggctcaagaagctatacctttcgaataactcgttctccggcgtgataccaccggagatcggtaacctaagcaagctgaccgagctgaccttgggagggaacatgttgaccggctggctatga
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| Protein seq | MRRHILVCHLPLIILLSSSLSSSCRSDHQIQIQALVQFKASLIDPLDNLQSWTTNATTSPCSYLGVQCDPVTGTVTEISLASMNLSGRISPAIGALAALTRLDLGDNTISGGVPPELSNCTQLQFLNLSCNGLTGELPNLSAKLAALDTLDVANNCLSGRFPAWVGNLSGLVILAVGENSYDRGETPPSIGNLKKLTHLYLSSCYLTGEIPESIFGLTALRTLDMSKNYLTGGIPAAIGNLCELWSIQLYSNNLTGELPPELGKLTGLRELDVSGNKLSGEIPASLAVLRNFEVIHLQWNNLSGPIPAAWGELRFLKRFAVYENNFSGEFPANFGRFSPLYGIDISENAFSGPFPRYLCHGKNLQYLLTIRNSFSGELPEEYSACHHLVIFRIHSNRLTGSLPAWVWGQQSAEIIDVSNNGFTGRISPAISKAQRLKELWLHNNRLDGEIPREIGRLWRLKKLYLSNNSFSGVIPPEIGNLSKLTELTLGGNMLTGWL
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0233000 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g12560 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0233000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0017830 | SBH | 0.128877 | 6.788608 | 1.696541 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0008190 | RBH | 0.0 | 0.566301 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0008140 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0008020 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0008080 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0061400 | SBH | 4.575236 | 3.059625 | 1.525088 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0004810 | SBH | 0.297846 | 0.021683 | 0.170285 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0114300 | RBH | 0 | 0.166558 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_Ung0000780 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0008250 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0017710 | SBH | 0.429796 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0008110 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0004850 | SBH | 0.056974 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G008260 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0008120 | RBH | 0.0 | 0.0 | 0.0 |
