Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_09g0004910 | OGI:09023160 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr09:8491413-8494868 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atggagcttgcaggtaagtaattaagctcgtacgtacgatgtaatctatgtatacgtccgtcacatttacggcttgtttctgcagtgcatatatatctatgtaattaatggtcactgggatccggaaaacgtaatttgctaagagaaatgtcgactgggaagcatatattaattaatttaattttactgtaacagtttcagaatagttattacggcttgtttcttcagtgcatttgtatctatgtaattaattaatggtcactggggtcatattaattttactgtgcaacagtttccgaatagtttttaacataaacatgattctgttgtgttctctataaattatcagtcgcctgaaactctgacgtatccggccccaaaacctagatctacgctccggccgtccaatatatagccaatatatagcatgctacaagacgcatataatttcaatttagaagagcactgttgtaatctattctcaaatgtcctctatttttttctgtatttcatgggtctttcttccttctattcttcataatgcttaaagttttattatgtccatgcaacatttctgagccattaattacttactttaaattttaaaatttgattcagggtaaagctaaaagttaaaaaatcagactaagccaacggattaggatatatataggATagacttgtttcttactcggtacggtaggaaaaccattctgttaatatgatatgggctacaattatcattcataaacgctaaaagacaattaatttctagtaatcaatcaggcgaTttttttaattgtttccatattgcacttgatgatccaatatgaaccaaatagtgagcgtgaaatctactatctcaatcccagaatataagaatttttaaagttagatacagttattaagaaagtaggaatatttaatagaggaaggttgacatttgttgaaaactggagataggtagggatattgaatgttggaaagtgtgattagttaggaagagaatgctgatggaaaaattgtttcgttttaagataaattgtaaagtgtacaatttgttatattttgggacggatggagtacattttttcggataatgtcaagttatagttgttcaattaaaaacagtattaacgtgtttaatcatatagttatatacatttaaatatgtatcaaggcccccCTcagtcgtatagaaagaacaacctaatatagctgtcacagatttgcagtagattgcaatttgcaagtgacaattttgttatattgtttggcgatgctgaatttagtgtgaacaatatatctgtacttttatttcctcagcttgctttgtggtcttttaattaattcaataattacaccgctggcatatgaacttgcgaggtggatgcgatttagtacgtaaacaagtaaatcacttattttgatgcataaacctgtctagtgtgtacaatccaaacccaaaataatacatcataactaatttcactaagttgaatactgattaggattgttatataggctttcatgtcaagatgaggttacctaaatacacatatgttcaatcaaatatataaaagtcatgttaattatacatattaaaggtgaatatatacaaaataatagaagaaataattgttacccatttacaaacacgacatttgtcatgcccttgatcgtttgtgcacgaaattatatatcagactaactcaacatgattagtcacaaatatatcgatttgaactatttcgcactacatactagacaagtttgcacatcataataagcaatttacaagtttAtgtactaaaatacattcacttcataagtttgtataccggcgacacaatttaattactctctaattaatttcttcctgccgcgtatgaacagtgtttttttttagctatgctacatcgtcatcatgcaaacctaagtctgctagtacggcagatatcccttagttttttgaatgcttgcaacactgactgtaaacattattcagcagaaggccaagcagaaatttgcattgaaactctgctcaccaacttgacggcctgctgggagagaagcaggacagggagcaaccgacccgagtgtaagattccgttattatgccctccgcagaggccggctgcggtgtgcatcggccccaaccaccacaatcccttctaccacctgatggagcaggagaagaaggtgatgctctacggcattctgatcctggtggacgagcagcacaaggctgccgtgctgaggagattagtggatgcggtcactgccctcgaaagcgttgcgaaggagcattattacatggagcaggtgccttgcgatgccatgagacgtactgcgggtttcgtgcagatgctgctcctcgacggatgctacatccttggcaagttcgtgctccatgacctcttacccgtcagggccaacggtgcggggacgagccagcagcagcaacatggtactggaagcgcgatgcagaacatggaattggtgcgcgacgtgttctaccgcctggataaccagatacccttctgtgtcctccgcgccatctacggggtgctccgtgaatgtagcaccacgccgggggtgatggcgagggggctcgatgagacgttggccgtccaagtccaggcacttctcaaacatttcggatactccattaggaaccaagtgcccggcgagatctggcacctgcatcacatgctgcacaagcacttcgtcccacaggacgatcctattcctaccggcgatgctgttcggctgccggtcgacgtcgtcgacaccggccggagatcagctacggcagccgcccccaccttgtaccggtggcgcgcagcgacgttctaccatgccaccggcgtgatcttcatgaaacgccacctccgccacggcgccagcagcggcgcgtggcgctggttcgtcgacggcggcggcgcccgctccgttctggacgtgaagttccatccgctgacgctgcggctgagcatcccgccgctcatggtggacatgaacacgtccacggtcctccggaacctgatgatgctggagcagcacaacccgagcctggggagccaggtcacggcctactgctacttcctgtcgcagcttgccggcacggcgagcgacgtcgcgctcctcgccaagaaggggatcatcgtgagcctcctggccagcgacggcgacgtcgccaggatgctcggcgagctctgcgtcggcatcaccatcaacccggccgacgagcgcagccacaactacctgctcgacacgaggaagggcctcgaacgtatgtacaagacccgcgtgattaggtggatagcgcagctctaccaccgacacttgagcaatccgttcgtgctgatggtgctggtggctgccatggttggatttgtctgtgaacttatacaggcaatctatgcagtcaagtccttcaagcgccaaccataa
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| CDS seq | atggagcttgcagcagaaggccaagcagaaatttgcattgaaactctgctcaccaacttgacggcctgctgggagagaagcaggacagggagcaaccgacccgagtgtaagattccgttattatgccctccgcagaggccggctgcggtgtgcatcggccccaaccaccacaatcccttctaccacctgatggagcaggagaagaaggtgatgctctacggcattctgatcctggtggacgagcagcacaaggctgccgtgctgaggagattagtggatgcggtcactgccctcgaaagcgttgcgaaggagcattattacatggagcaggtgccttgcgatgccatgagacgtactgcgggtttcgtgcagatgctgctcctcgacggatgctacatccttggcaagttcgtgctccatgacctcttacccgtcagggccaacggtgcggggacgagccagcagcagcaacatggtactggaagcgcgatgcagaacatggaattggtgcgcgacgtgttctaccgcctggataaccagatacccttctgtgtcctccgcgccatctacggggtgctccgtgaatgtagcaccacgccgggggtgatggcgagggggctcgatgagacgttggccgtccaagtccaggcacttctcaaacatttcggatactccattaggaaccaagtgcccggcgagatctggcacctgcatcacatgctgcacaagcacttcgtcccacaggacgatcctattcctaccggcgatgctgttcggctgccggtcgacgtcgtcgacaccggccggagatcagctacggcagccgcccccaccttgtaccggtggcgcgcagcgacgttctaccatgccaccggcgtgatcttcatgaaacgccacctccgccacggcgccagcagcggcgcgtggcgctggttcgtcgacggcggcggcgcccgctccgttctggacgtgaagttccatccgctgacgctgcggctgagcatcccgccgctcatggtggacatgaacacgtccacggtcctccggaacctgatgatgctggagcagcacaacccgagcctggggagccaggtcacggcctactgctacttcctgtcgcagcttgccggcacggcgagcgacgtcgcgctcctcgccaagaaggggatcatcgtgagcctcctggccagcgacggcgacgtcgccaggatgctcggcgagctctgcgtcggcatcaccatcaacccggccgacgagcgcagccacaactacctgctcgacacgaggaagggcctcgaacgtatgtacaagacccgcgtgattaggtggatagcgcagctctaccaccgacacttgagcaatccgttcgtgctgatggtgctggtggctgccatggttggatttgtctgtgaacttatacaggcaatctatgcagtcaagtccttcaagcgccaaccataa
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| Protein seq | MELAAEGQAEICIETLLTNLTACWERSRTGSNRPECKIPLLCPPQRPAAVCIGPNHHNPFYHLMEQEKKVMLYGILILVDEQHKAAVLRRLVDAVTALESVAKEHYYMEQVPCDAMRRTAGFVQMLLLDGCYILGKFVLHDLLPVRANGAGTSQQQQHGTGSAMQNMELVRDVFYRLDNQIPFCVLRAIYGVLRECSTTPGVMARGLDETLAVQVQALLKHFGYSIRNQVPGEIWHLHHMLHKHFVPQDDPIPTGDAVRLPVDVVDTGRRSATAAAPTLYRWRAATFYHATGVIFMKRHLRHGASSGAWRWFVDGGGARSVLDVKFHPLTLRLSIPPLMVDMNTSTVLRNLMMLEQHNPSLGSQVTAYCYFLSQLAGTASDVALLAKKGIIVSLLASDGDVARMLGELCVGITINPADERSHNYLLDTRKGLERMYKTRVIRWIAQLYHRHLSNPFVLMVLVAAMVGFVCELIQAIYAVKSFKRQP |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_09g0004910 | OsLima_09g0004910.01 | Chr09 | 8491413 | 8494868 | + | NAM | ||
| CDS seq | atggagcttgcagcagaaggccaagcagaaatttgcattgaaactctgctcaccaacttgacggcctgctgggagagaagcaggacagggagcaaccgacccgagtgtaagattccgttattatgccctccgcagaggccggctgcggtgtgcatcggccccaaccaccacaatcccttctaccacctgatggagcaggagaagaaggtgatgctctacggcattctgatcctggtggacgagcagcacaaggctgccgtgctgaggagattagtggatgcggtcactgccctcgaaagcgttgcgaaggagcattattacatggagcaggtgccttgcgatgccatgagacgtactgcgggtttcgtgcagatgctgctcctcgacggatgctacatccttggcaagttcgtgctccatgacctcttacccgtcagggccaacggtgcggggacgagccagcagcagcaacatggtactggaagcgcgatgcagaacatggaattggtgcgcgacgtgttctaccgcctggataaccagatacccttctgtgtcctccgcgccatctacggggtgctccgtgaatgtagcaccacgccgggggtgatggcgagggggctcgatgagacgttggccgtccaagtccaggcacttctcaaacatttcggatactccattaggaaccaagtgcccggcgagatctggcacctgcatcacatgctgcacaagcacttcgtcccacaggacgatcctattcctaccggcgatgctgttcggctgccggtcgacgtcgtcgacaccggccggagatcagctacggcagccgcccccaccttgtaccggtggcgcgcagcgacgttctaccatgccaccggcgtgatcttcatgaaacgccacctccgccacggcgccagcagcggcgcgtggcgctggttcgtcgacggcggcggcgcccgctccgttctggacgtgaagttccatccgctgacgctgcggctgagcatcccgccgctcatggtggacatgaacacgtccacggtcctccggaacctgatgatgctggagcagcacaacccgagcctggggagccaggtcacggcctactgctacttcctgtcgcagcttgccggcacggcgagcgacgtcgcgctcctcgccaagaaggggatcatcgtgagcctcctggccagcgacggcgacgtcgccaggatgctcggcgagctctgcgtcggcatcaccatcaacccggccgacgagcgcagccacaactacctgctcgacacgaggaagggcctcgaacgtatgtacaagacccgcgtgattaggtggatagcgcagctctaccaccgacacttgagcaatccgttcgtgctgatggtgctggtggctgccatggttggatttgtctgtgaacttatacaggcaatctatgcagtcaagtccttcaagcgccaaccataa
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| Protein seq | MELAAEGQAEICIETLLTNLTACWERSRTGSNRPECKIPLLCPPQRPAAVCIGPNHHNPFYHLMEQEKKVMLYGILILVDEQHKAAVLRRLVDAVTALESVAKEHYYMEQVPCDAMRRTAGFVQMLLLDGCYILGKFVLHDLLPVRANGAGTSQQQQHGTGSAMQNMELVRDVFYRLDNQIPFCVLRAIYGVLRECSTTPGVMARGLDETLAVQVQALLKHFGYSIRNQVPGEIWHLHHMLHKHFVPQDDPIPTGDAVRLPVDVVDTGRRSATAAAPTLYRWRAATFYHATGVIFMKRHLRHGASSGAWRWFVDGGGARSVLDVKFHPLTLRLSIPPLMVDMNTSTVLRNLMMLEQHNPSLGSQVTAYCYFLSQLAGTASDVALLAKKGIIVSLLASDGDVARMLGELCVGITINPADERSHNYLLDTRKGLERMYKTRVIRWIAQLYHRHLSNPFVLMVLVAAMVGFVCELIQAIYAVKSFKRQP
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_09g0301800 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os09g13040 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os09g0301800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_09g0004820 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_09g0004840 | RBH | 0.0 | 1.472149 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_09g0004950 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_09g0004720 | RBH | 0.0 | 0.040374 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_09g0004780 | RBH | 0.0 | 2.212817 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_09G0132700 | RBH | 0.062336 | 0.17557 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_09g0004930 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_09G0126300 | RBH | 0.0113035 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_09g0004870 | RBH | 0.0 | 0.045204 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_09g0004780 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_09g0004850 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_09g0004650 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_09g0004710 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_09G005010 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_09g0004850 | RBH | 0.0 | 0.0 | 0.0 |
