Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_09g0004870 | OGI:09022860 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr09:8371971-8373947 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atgacaattgacatcgaatctctggtaaaggatgtgacgatctgctggcagcgtgccgagggagcgaagagccgatcgagatgcaagattccgtcgcttgatcagagagacaggccggctgcgatgtgcatcggccctaaccaccacaatcccttctaccgccagatggaggaggagaagaaggcgatgctctacagcatactgacccaggtggacgagcaacacaaggctgcagtgctgaccagattaatggacgcgatcaaagccctcgaaaacgaagcaagggaccattacctcgaccgcgccgagagcatgagcagttcggagttcgtgcagatgctggtaatcgacgggTgctacatccttggcaagttcgtgctgcctcactcctgctgccccagcacttcagacggcggggcgcagaacgggagcgcgatgcagaacatggaattggtgcgcgacgtgttctaccgcctggataaccagatacccttctgtgtcctcgacgagatccacaaggtgctccatggtaagatcatccgctcgtgcacggcggtcgccgacgtgttggtaacccacgtcggggatctgctcgagaacctgagctactccagggtgcacgcactcgatgttcacgcgaacccctggcacttgcttcacttgctgcacacgcgcctccagcccaccgccgagtggggcagcgagaagcctaccaagggcgccgctgcgcatgtcgtcgtcagctgcgcatccacgcccggtttctaccgctggcgcccagcgacgcagtacgacgccgctggcgtgcggttcaggaagttcgatggctccagctgcatcctggacgtgaagctcgacggcgccacgctgcgcgtgccgtcgcttgtggtggacacgaacacgtacgccctcctgcgaaacctgatgatgctggagcagcacaacccagaccagctcggcagccacgtcacggcgtactgcgtcttcctctcgcagctcgccggaacgcccggcgacgtcgcgctgctcgcgaggaaggggatcatcgtgcacctcctgcccagcgacagcgacgtcgccgtgatgttcgccggcctctgcgtcggcatcaccatcggcatggacgagcccaaacacaactacctgcacaaggagaggaatgatctcgagcgaatctacaacagccgcctcatggtgcaacacactaggaactgcatgacactgccgcatcgcaacccgatgctggtggtcgcgcttcttgccgccacgcttgggttagtctgccttcttctccaggccatctataccatgaagagctactattgtaagggaaatacatcttgacagagcgttcgatgcaagaccaaacgtcggatggtcatataattaaggtgaggttcacagtcgattcaatccatatcctacaaccttatcctcttattttcagctcatcgttttttttgcgctcataggaagcacaggatggcatcaccatcatcgccacgcccaccgagatgtgaagagggaggaggttgccggcggctacgcgggtggcgacggggcaacagaagagggaggaggacgcccgacgccgatgaccatgctggtgacggcgggggatgctgaggcgaaaGggaggacaggatgaggtgctagcactctgccggcggtgttgatttatttcagctgtggcccaatgcaagccgattctctcggagcttatcgggaggacgaattagtctagcagagtttgttagagatgcaaataagtcgcgaatcagttgatcgtgaccgagtcgagcgctgggagtggcgtgcgtgtgtgcgtggagttcagaaaaagcggatcgtgggatggcgcgattttagcctcggattccaaatttgtttgttgagtataagtagttgtcttagctctttatttcagttgtaaggtttacattcagttgaatgagaaaaaccccagaaaattgcccc
More
|
||||||||||
| CDS seq | atgacaattgacatcgaatctctggtaaaggatgtgacgatctgctggcagcgtgccgagggagcgaagagccgatcgagatgcaagattccgtcgcttgatcagagagacaggccggctgcgatgtgcatcggccctaaccaccacaatcccttctaccgccagatggaggaggagaagaaggcgatgctctacagcatactgacccaggtggacgagcaacacaaggctgcagtgctgaccagattaatggacgcgatcaaagccctcgaaaacgaagcaagggaccattacctcgaccgcgccgagagcatgagcagttcggagttcgtgcagatgctggtaatcgacgggTgctacatccttggcaagttcgtgctgcctcactcctgctgccccagcacttcagacggcggggcgcagaacgggagcgcgatgcagaacatggaattggtgcgcgacgtgttctaccgcctggataaccagatacccttctgtgtcctcgacgagatccacaaggtgctccatggtaagatcatccgctcgtgcacggcggtcgccgacgtgttggtaacccacgtcggggatctgctcgagaacctgagctactccagggtgcacgcactcgatgttcacgcgaacccctggcacttgcttcacttgctgcacacgcgcctccagcccaccgccgagtggggcagcgagaagcctaccaagggcgccgctgcgcatgtcgtcgtcagctgcgcatccacgcccggtttctaccgctggcgcccagcgacgcagtacgacgccgctggcgtgcggttcaggaagttcgatggctccagctgcatcctggacgtgaagctcgacggcgccacgctgcgcgtgccgtcgcttgtggtggacacgaacacgtacgccctcctgcgaaacctgatgatgctggagcagcacaacccagaccagctcggcagccacgtcacggcgtactgcgtcttcctctcgcagctcgccggaacgcccggcgacgtcgcgctgctcgcgaggaaggggatcatcgtgcacctcctgcccagcgacagcgacgtcgccgtgatgttcgccggcctctgcgtcggcatcaccatcggcatggacgagcccaaacacaactacctgcacaaggagaggaatgatctcgagcgaatctacaacagccgcctcatggtgcaacacactaggaactgcatgacactgccgcatcgcaacccgatgctggtggtcgcgcttcttgccgccacgcttgggttagtctgccttcttctccaggccatctataccatgaagagctactattgtaagggaaatacatcttga
More
|
||||||||||
| Protein seq | MTIDIESLVKDVTICWQRAEGAKSRSRCKIPSLDQRDRPAAMCIGPNHHNPFYRQMEEEKKAMLYSILTQVDEQHKAAVLTRLMDAIKALENEARDHYLDRAESMSSSEFVQMLVIDGCYILGKFVLPHSCCPSTSDGGAQNGSAMQNMELVRDVFYRLDNQIPFCVLDEIHKVLHGKIIRSCTAVADVLVTHVGDLLENLSYSRVHALDVHANPWHLLHLLHTRLQPTAEWGSEKPTKGAAAHVVVSCASTPGFYRWRPATQYDAAGVRFRKFDGSSCILDVKLDGATLRVPSLVVDTNTYALLRNLMMLEQHNPDQLGSHVTAYCVFLSQLAGTPGDVALLARKGIIVHLLPSDSDVAVMFAGLCVGITIGMDEPKHNYLHKERNDLERIYNSRLMVQHTRNCMTLPHRNPMLVVALLAATLGLVCLLLQAIYTMKSYYCKGNTS |
||||||||||
| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_09g0004870 | OsLima_09g0004870.01 | Chr09 | 8371971 | 8373314 | + | NAM | ||
| CDS seq | atgacaattgacatcgaatctctggtaaaggatgtgacgatctgctggcagcgtgccgagggagcgaagagccgatcgagatgcaagattccgtcgcttgatcagagagacaggccggctgcgatgtgcatcggccctaaccaccacaatcccttctaccgccagatggaggaggagaagaaggcgatgctctacagcatactgacccaggtggacgagcaacacaaggctgcagtgctgaccagattaatggacgcgatcaaagccctcgaaaacgaagcaagggaccattacctcgaccgcgccgagagcatgagcagttcggagttcgtgcagatgctggtaatcgacgggTgctacatccttggcaagttcgtgctgcctcactcctgctgccccagcacttcagacggcggggcgcagaacgggagcgcgatgcagaacatggaattggtgcgcgacgtgttctaccgcctggataaccagatacccttctgtgtcctcgacgagatccacaaggtgctccatggtaagatcatccgctcgtgcacggcggtcgccgacgtgttggtaacccacgtcggggatctgctcgagaacctgagctactccagggtgcacgcactcgatgttcacgcgaacccctggcacttgcttcacttgctgcacacgcgcctccagcccaccgccgagtggggcagcgagaagcctaccaagggcgccgctgcgcatgtcgtcgtcagctgcgcatccacgcccggtttctaccgctggcgcccagcgacgcagtacgacgccgctggcgtgcggttcaggaagttcgatggctccagctgcatcctggacgtgaagctcgacggcgccacgctgcgcgtgccgtcgcttgtggtggacacgaacacgtacgccctcctgcgaaacctgatgatgctggagcagcacaacccagaccagctcggcagccacgtcacggcgtactgcgtcttcctctcgcagctcgccggaacgcccggcgacgtcgcgctgctcgcgaggaaggggatcatcgtgcacctcctgcccagcgacagcgacgtcgccgtgatgttcgccggcctctgcgtcggcatcaccatcggcatggacgagcccaaacacaactacctgcacaaggagaggaatgatctcgagcgaatctacaacagccgcctcatggtgcaacacactaggaactgcatgacactgccgcatcgcaacccgatgctggtggtcgcgcttcttgccgccacgcttgggttagtctgccttcttctccaggccatctataccatgaagagctactattgtaagggaaatacatcttga
More
|
|||||||
| Protein seq | MTIDIESLVKDVTICWQRAEGAKSRSRCKIPSLDQRDRPAAMCIGPNHHNPFYRQMEEEKKAMLYSILTQVDEQHKAAVLTRLMDAIKALENEARDHYLDRAESMSSSEFVQMLVIDGCYILGKFVLPHSCCPSTSDGGAQNGSAMQNMELVRDVFYRLDNQIPFCVLDEIHKVLHGKIIRSCTAVADVLVTHVGDLLENLSYSRVHALDVHANPWHLLHLLHTRLQPTAEWGSEKPTKGAAAHVVVSCASTPGFYRWRPATQYDAAGVRFRKFDGSSCILDVKLDGATLRVPSLVVDTNTYALLRNLMMLEQHNPDQLGSHVTAYCVFLSQLAGTPGDVALLARKGIIVHLLPSDSDVAVMFAGLCVGITIGMDEPKHNYLHKERNDLERIYNSRLMVQHTRNCMTLPHRNPMLVVALLAATLGLVCLLLQAIYTMKSYYCKGNTS
More
|
|||||||
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_09g0004870 | OsLima_09g0004870.02 | Chr09 | 8372917 | 8373947 | + | IsoSeq | ||
| CDS seq | agaccagctcggcagccacgtcacggcgtactgcgtcttcctctcgcagctcgccggaacgcccggcgacgtcgcgctgctcgcgaggaaggggatcatcgtgcacctcctgcccagcgacagcgacgtcgccgtgatgttcgccggcctctgcgtcggcatcaccatcggcatggacgagcccaaacacaactacctgcacaaggagag
More
|
|||||||
| Protein seq | RPARQPRHGVLRLPLAARRNARRRRAAREEGDHRAPPAQRQRRRRDVRRPLRRHHHRHGRAQTQLPAQGE |
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.045204 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_09g0300800 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os09g12970 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os09g0300800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_09g0004780 | RBH | 3.336666 | 30.378599 | 20.419725 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_09g0004800 | RBH | 0.0 | 3.660344 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_09g0004910 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_09g0004680 | RBH | 0.0 | 0.238424 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_09g0004730 | RBH | 0.0 | 16.741993 | 0.166506 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_09G0130900 | RBH | 0.058049 | 2.594323 | 0.008864 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_09g0004870 | RBH | 0.0 | 0.804154 | 0.005093 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_09G0125200 | RBH | 0.01632 | 0.3453825 | 0.009155 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_09g0004910 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_09g0004740 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_09g0004810 | RBH | 0.0 | 14.078742 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_09g0004610 | RBH | 0.0 | 0.0 | 0.052893 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_09g0004640 | RBH | 0.0 | 3.611114 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_09G004970 | RBH | 0.0 | 4.360526 | 0.177068 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_09g0004810 | RBH | 0.0 | 18.145170 | 0.000000 |
