Basic Info |
Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
Os09g0301800 | OGI:09023160 | 16/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr09:7519040-7523188 | ||||||||
Gene Symbol | - | ||||||||||
DNA seq | TAATTTAATTTTACTGTAACAGTTTCAGAATAGTTATTACGGCTTGTTTCTTCAGTGCATTTGTATCTATGTAATTAATTAATGGTCACTGGGGTCATATTGATTTTACTGTGCAACAGTTTCAGAATAGTTTTGAACATAAACATGATTCTGTTGTGTTCTGTATAAATTATCAGTCGCCTGAAACTCTGACGTATCCGGCCCCAAAACCTAGATCTACGCTCCGGCCGTCCAATATATAGCCAATATATAGCATGCTACAAGACGCATATAATTTCAATTTAGAAGAGCACTGTTGTAATCTATTCTCAAATGTCCTCTATTTTTTTTCTGTATTTCATGGGTCTTTCTTCCTTCTATTCTTCATAATGCTTAAAGTTTTATTATGTCCATGCAACATTTCTGAGCCATTAATTACTTACTTTAAATTTTAAAATTTGATTCAGGGTAAAGCTAAAAGTTAAAAAATCAGACTAAGCCAACGGATTAGGATATATATAGGATAGACTTGTTTCTTACTCGGTACGGTAGGAAAACCATTCTGTTAATATGATATGGGCTACAATTATCATTCATAAACGCTAAAAGACAATTAATTTCTAGTAATCAATCAGGCGATTTTTTTAATTGTTTCCATATTGCACTTGATGATCCAATATGAACCAAATAGTGAACGTGAAATCTACTATCTCAATCCCAGAATATAAGAATTTTTAAAGTTAGATACAGTTATTAAGAAAGTAGGAATATTTAATAGAGGAAGGTTGACATTTGTTGAAACCTGGAGATAGGTAGGGATATTGAATGTTGGAAGGTGTGATTAGTTAGGAAGAGAATGCTGATGGAAAAATTGTTTCGTTTTAAGATAAATTGTAAAGTGTACAATTTGTTATATTTTGGGACGGATGGAGTACATTTTTTCGGATAATGTCAAGTTATAGTTGTTCAATTAAAAACAGTATTAACGTGTTTAATTATATAGTTATATACATTTAAATATGTATCAAGGCCCCCCTCAGTCGTATAGAAAGAACAACCTAATATAGCTGTCACAGATTTGCAGTAGATTGCAATTTGCAAGTGACAATTTTGTTATATTGTTTGGCGATGCTGAATTTAGTGTGAACAATATATCTGTACTTTTATTTCCTCAGCTTGCTTTGTGGTCTTTTAATTAATTCAATAATTACACCGCTGGCATATGAACTTGCGAGGTGGGTGCGATTTAGTACGTAAACAAGTAAATCACTTATTTTGATGCATAAACCTGTCTAGTGTGTACAATCCAAACCCAAAATAATACATCATAACTAATTTCACTAAGTTGAATACTGATTAGGATTGTTATATAGGCTTTCATGTCAAGATGAGGTTACCTAAATACACATATGTTCAATCAAATATATAAAAGTCATGTTAATTATACATATTAAAGGTGAATATATACAAAATAATAGAAGAAATAATTGTTACCCATTTACAAACACGACATTTGTCATGCCCTTGATCGTTTGTGCACGAAATTATATATCAGACTAACTCAACATGATTAGTCACAAATATATCGATTTGAACTATTTCGCACTACATACTAGACAAGTTTGCACATCATAATAAGCAATTTAAAAGTTTATGTACTAAAATACAGTCACTTCATAAGTTTGTATACCGGCGACACAATTTAATTACTCTCTAATTAATTTCTTCCTGCCGCGTATGAACAGTGTTTTTTTTTTAGCTATGCTACATCGTCATCATGCAAACCTAAGTCTGCTAGTACGGCAGATATCCCTTAGTTTTTTGAATGCTTGCAACACTGACTGTAAACATTATTCAGCAGAAGGCCAAGCAGAAATTTGCATTGAAACTCTGCTCACCAACTTGACGGCCTGCTGGGAGAGAAGCAGGACAGGGAGCAACCGACCCGAGTGTAAGATTCCGTTATTATGCCCTCCGCAGAGGCCGGCTGCGGTGTGCATCGGCCCCAACCACCACAATCCCTTCTACCACCTGATGGAGCAGGAGAAGAAGGTGATGCTCTACGGCATTCTGATCCTGGTGGACGAGCAGCACAAGGCTGCCGTGCTGAGGAGATTAGTGGATGCGGTCACTGCCCTCGAAAGCGTTGCGAAGGAGCATTATTACATGGAGCAGGTGCCTTGCGATGCCATGAGACGTACTGCGGGTTTCGTGCAGATGCTGCTCCTCGACGGATGCTACATCCTTGGCAAGTTCGTGCTCCATGACCTCTTACCCGTCAGGGCCAACGGTGCGGGGACGAGCCAGCAGCAGCAACATGGTACTGGAAGCGCGATGCAGAACATGGAATTGGTGCGCGACGTGTTCTACCGCCTGGATAACCAGATACCCTTCTGTGTCCTCCGCGCCATCTACGGGGTGCTCCGTGAATGTAGAACCACGCCGGGGGTGATGGCGAGGGAGCTCGATGAGACGTTGGCCGTCCAAGTCCAGGCACTTCTCAAACATTTCGGATACTCCATTAGGAACCAAGTGCCCCGCGAGATCTGGCACCTGCATCACATGCTGCACAAGCACTTCGTCCCACAGGACGATCCTATTCCTACCGGCGATGCTGTTCGGCTGCCGGTCGACGTCGTCGACACCGGCCGGAGATCAGCTACGGCAGCCGCCCCCACCTTGTACCGGTGGCGCGCAGCGACGTTCTACCATGCCACCGGCGTGATCTTCATGAAACGCCACCTCCGCCACGGCGCCAGCAGCGGCGCGTGGCGCTGGTTCGTCGACGGCGGCGGCGCCCGCTCCGTTCTGGACGTGAAGTTCCATCCGCTGACGCTGCGGCTGAGCATCCCGCCGCTCATGGTGGACATGAACACGTCCACGGTCCTCCGGAACCTGATGATGCTGGAGCAGCACAACCCGAGCCTGGGGAGCCAGGTCACGGCCTACTGCTACTTCCTGTCGCAGCTAGCCGGCACGGCGAGCGACGTCGCGCTCCTCGCCAAGAAGGGGATCATCGTGAGCCTCCTGGCCAGCGACGGCGACGTCGCCAGGATGCTCGGCGAGCTCTGCGTCGGCATCACCATCAACCCGGCCGACGAGCGCAGCCACAACTACCTGCTCGACACGAGGAAGGGCCTCGAACGTATGTACAAGACCCGCGTGATTAGGTGGATAGCGCAGCTCTACCACCGCTACTTGAGCAATCCGTTCGTGCTGACGGTGCTGGTGGCTGCCATGGTTGGATTTGTCTGTGAACTTATACAGGCAATCTATGCAGTCAAGTCCTTCAAGCGCCGACCATAACATCTACATGTGGAGCTGGCAAACCTTAAATATCGAACTACCCGCCTTTTGTTAGGTTTATTTTTCTCTCCTTTCACTCCATTAAGAGTAGTTAACATTGGGAGTACTTAATTTTTATCCGGGTTCTGTAAATTGTAATAAGGCGCCAATTCCATTTTATTTAGATCCGTGTGCCGGGCATGTCGCGTTCGTTGTAGCTTACACAGGCCAGCTTGTTTGTGTCATGTCATCAAAAGTAGTACCATTTTTTTCCAAAAAACTTTTAACATCAACATTGCTTAAATAAATAGCATAAGTTTTAATACTAGAACCAACTATTAGCTATAAGCTTATGTTTGACCTAATATAAGATGTACAATAGTTTATTTATAAGGTTAATTACCTCTCTATTTTGCTCATCTATATATGTAATACAATTTTCTTGGAGCATGTGAAGACCAGGTTTTTTTTTATGAGAATTTCGCTTTGGACCAGTTCTTTTTACCAGAGTTTCACAATAGACCAGGCCTAACATTAGGTTTTCACTTAACACCATATAATTTTGCACTAGGTTGCACTTTGGACTAGGGGTTGGTGATTTGGGATAGGATGTTGGCTGTGGCCCATCCACGTTAGCAGGCAACACCCTCTCTTCTTCGGCACCGGCAATGCTGATCTGGCCACCGCCAAGCAACAAGGATGTGGGTGAGCTCTGCACGTGCATAACAGCTGAGCATATGCGGGGAGAAGAGCAGCCGAGAAGGTGCGGCAAGTGGGAGAAGCAATGATCTCGAACGACAAGAATGTGCTTGGAGATTGTTGAGGTCACCGGTCACAGAACAAAGAGATCGGCGACGGGCTTGAATGGGTCGCGGACGTGGAGAC
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CDS seq | ATGAACAGTGTTTTTTTTTTAGCTATGCTACATCGTCATCATGCAAACCTAAGTCTGCTAGTACGGCAGATATCCCTTAGTTTTTTGAATGCTTGCAACACTGACTGTAAACATTATTCAGCAGAAGGCCAAGCAGAAATTTGCATTGAAACTCTGCTCACCAACTTGACGGCCTGCTGGGAGAGAAGCAGGACAGGGAGCAACCGACCCGAGTGTAAGATTCCGTTATTATGCCCTCCGCAGAGGCCGGCTGCGGTGTGCATCGGCCCCAACCACCACAATCCCTTCTACCACCTGATGGAGCAGGAGAAGAAGGTGATGCTCTACGGCATTCTGATCCTGGTGGACGAGCAGCACAAGGCTGCCGTGCTGAGGAGATTAGTGGATGCGGTCACTGCCCTCGAAAGCGTTGCGAAGGAGCATTATTACATGGAGCAGGTGCCTTGCGATGCCATGAGACGTACTGCGGGTTTCGTGCAGATGCTGCTCCTCGACGGATGCTACATCCTTGGCAAGTTCGTGCTCCATGACCTCTTACCCGTCAGGGCCAACGGTGCGGGGACGAGCCAGCAGCAGCAACATGGTACTGGAAGCGCGATGCAGAACATGGAATTGGTGCGCGACGTGTTCTACCGCCTGGATAACCAGATACCCTTCTGTGTCCTCCGCGCCATCTACGGGGTGCTCCGTGAATGTAGAACCACGCCGGGGGTGATGGCGAGGGAGCTCGATGAGACGTTGGCCGTCCAAGTCCAGGCACTTCTCAAACATTTCGGATACTCCATTAGGAACCAAGTGCCCCGCGAGATCTGGCACCTGCATCACATGCTGCACAAGCACTTCGTCCCACAGGACGATCCTATTCCTACCGGCGATGCTGTTCGGCTGCCGGTCGACGTCGTCGACACCGGCCGGAGATCAGCTACGGCAGCCGCCCCCACCTTGTACCGGTGGCGCGCAGCGACGTTCTACCATGCCACCGGCGTGATCTTCATGAAACGCCACCTCCGCCACGGCGCCAGCAGCGGCGCGTGGCGCTGGTTCGTCGACGGCGGCGGCGCCCGCTCCGTTCTGGACGTGAAGTTCCATCCGCTGACGCTGCGGCTGAGCATCCCGCCGCTCATGGTGGACATGAACACGTCCACGGTCCTCCGGAACCTGATGATGCTGGAGCAGCACAACCCGAGCCTGGGGAGCCAGGTCACGGCCTACTGCTACTTCCTGTCGCAGCTAGCCGGCACGGCGAGCGACGTCGCGCTCCTCGCCAAGAAGGGGATCATCGTGAGCCTCCTGGCCAGCGACGGCGACGTCGCCAGGATGCTCGGCGAGCTCTGCGTCGGCATCACCATCAACCCGGCCGACGAGCGCAGCCACAACTACCTGCTCGACACGAGGAAGGGCCTCGAACGTATGTACAAGACCCGCGTGATTAGGTGGATAGCGCAGCTCTACCACCGCTACTTGAGCAATCCGTTCGTGCTGACGGTGCTGGTGGCTGCCATGGTTGGATTTGTCTGTGAACTTATACAGGCAATCTATGCAGTCAAGTCCTTCAAGCGCCGACCATAA
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Protein seq | MNSVFFLAMLHRHHANLSLLVRQISLSFLNACNTDCKHYSAEGQAEICIETLLTNLTACWERSRTGSNRPECKIPLLCPPQRPAAVCIGPNHHNPFYHLMEQEKKVMLYGILILVDEQHKAAVLRRLVDAVTALESVAKEHYYMEQVPCDAMRRTAGFVQMLLLDGCYILGKFVLHDLLPVRANGAGTSQQQQHGTGSAMQNMELVRDVFYRLDNQIPFCVLRAIYGVLRECRTTPGVMARELDETLAVQVQALLKHFGYSIRNQVPREIWHLHHMLHKHFVPQDDPIPTGDAVRLPVDVVDTGRRSATAAAPTLYRWRAATFYHATGVIFMKRHLRHGASSGAWRWFVDGGGARSVLDVKFHPLTLRLSIPPLMVDMNTSTVLRNLMMLEQHNPSLGSQVTAYCYFLSQLAGTASDVALLAKKGIIVSLLASDGDVARMLGELCVGITINPADERSHNYLLDTRKGLERMYKTRVIRWIAQLYHRYLSNPFVLTVLVAAMVGFVCELIQAIYAVKSFKRRP |
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Function | - |
Transcripts
Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
Os09g0301800 | Os09t0301800-01 | Chr09 | 7519040 | 7523188 | + | irgsp1_rep | ||
CDS seq | ATGAACAGTGTTTTTTTTTTAGCTATGCTACATCGTCATCATGCAAACCTAAGTCTGCTAGTACGGCAGATATCCCTTAGTTTTTTGAATGCTTGCAACACTGACTGTAAACATTATTCAGCAGAAGGCCAAGCAGAAATTTGCATTGAAACTCTGCTCACCAACTTGACGGCCTGCTGGGAGAGAAGCAGGACAGGGAGCAACCGACCCGAGTGTAAGATTCCGTTATTATGCCCTCCGCAGAGGCCGGCTGCGGTGTGCATCGGCCCCAACCACCACAATCCCTTCTACCACCTGATGGAGCAGGAGAAGAAGGTGATGCTCTACGGCATTCTGATCCTGGTGGACGAGCAGCACAAGGCTGCCGTGCTGAGGAGATTAGTGGATGCGGTCACTGCCCTCGAAAGCGTTGCGAAGGAGCATTATTACATGGAGCAGGTGCCTTGCGATGCCATGAGACGTACTGCGGGTTTCGTGCAGATGCTGCTCCTCGACGGATGCTACATCCTTGGCAAGTTCGTGCTCCATGACCTCTTACCCGTCAGGGCCAACGGTGCGGGGACGAGCCAGCAGCAGCAACATGGTACTGGAAGCGCGATGCAGAACATGGAATTGGTGCGCGACGTGTTCTACCGCCTGGATAACCAGATACCCTTCTGTGTCCTCCGCGCCATCTACGGGGTGCTCCGTGAATGTAGAACCACGCCGGGGGTGATGGCGAGGGAGCTCGATGAGACGTTGGCCGTCCAAGTCCAGGCACTTCTCAAACATTTCGGATACTCCATTAGGAACCAAGTGCCCCGCGAGATCTGGCACCTGCATCACATGCTGCACAAGCACTTCGTCCCACAGGACGATCCTATTCCTACCGGCGATGCTGTTCGGCTGCCGGTCGACGTCGTCGACACCGGCCGGAGATCAGCTACGGCAGCCGCCCCCACCTTGTACCGGTGGCGCGCAGCGACGTTCTACCATGCCACCGGCGTGATCTTCATGAAACGCCACCTCCGCCACGGCGCCAGCAGCGGCGCGTGGCGCTGGTTCGTCGACGGCGGCGGCGCCCGCTCCGTTCTGGACGTGAAGTTCCATCCGCTGACGCTGCGGCTGAGCATCCCGCCGCTCATGGTGGACATGAACACGTCCACGGTCCTCCGGAACCTGATGATGCTGGAGCAGCACAACCCGAGCCTGGGGAGCCAGGTCACGGCCTACTGCTACTTCCTGTCGCAGCTAGCCGGCACGGCGAGCGACGTCGCGCTCCTCGCCAAGAAGGGGATCATCGTGAGCCTCCTGGCCAGCGACGGCGACGTCGCCAGGATGCTCGGCGAGCTCTGCGTCGGCATCACCATCAACCCGGCCGACGAGCGCAGCCACAACTACCTGCTCGACACGAGGAAGGGCCTCGAACGTATGTACAAGACCCGCGTGATTAGGTGGATAGCGCAGCTCTACCACCGCTACTTGAGCAATCCGTTCGTGCTGACGGTGCTGGTGGCTGCCATGGTTGGATTTGTCTGTGAACTTATACAGGCAATCTATGCAGTCAAGTCCTTCAAGCGCCGACCATAA
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Protein seq | MNSVFFLAMLHRHHANLSLLVRQISLSFLNACNTDCKHYSAEGQAEICIETLLTNLTACWERSRTGSNRPECKIPLLCPPQRPAAVCIGPNHHNPFYHLMEQEKKVMLYGILILVDEQHKAAVLRRLVDAVTALESVAKEHYYMEQVPCDAMRRTAGFVQMLLLDGCYILGKFVLHDLLPVRANGAGTSQQQQHGTGSAMQNMELVRDVFYRLDNQIPFCVLRAIYGVLRECRTTPGVMARELDETLAVQVQALLKHFGYSIRNQVPREIWHLHHMLHKHFVPQDDPIPTGDAVRLPVDVVDTGRRSATAAAPTLYRWRAATFYHATGVIFMKRHLRHGASSGAWRWFVDGGGARSVLDVKFHPLTLRLSIPPLMVDMNTSTVLRNLMMLEQHNPSLGSQVTAYCYFLSQLAGTASDVALLAKKGIIVSLLASDGDVARMLGELCVGITINPADERSHNYLLDTRKGLERMYKTRVIRWIAQLYHRYLSNPFVLTVLVAAMVGFVCELIQAIYAVKSFKRRP
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Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
Leaf | Root | Panicle | |
FPKM | None | None | None |
Homologues
Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
---|---|---|---|---|---|
Leaf | Root | Panicle | |||
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_09g0301800 | RBH | 0.0 | 0.0 | 0.0 |
Nipponbare | IRGSP 1.0 | MSU | LOC_Os09g13040 | RBH | 0.0 | 0.0 | 0.0 |
Nipponbare | IRGSP 1.0 | RAP-db | Os09g0300800 | RBH | None | None | None |
Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_09g0004820 | RBH | 0.0 | 0.0 | 0.0 |
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_09g0004840 | RBH | 0.0 | 1.472149 | 0.0 |
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_09g0004950 | RBH | 0.0 | 0.0 | 0.0 |
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_09g0004720 | RBH | 0.0 | 0.040374 | None |
PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_09g0004780 | RBH | 0.0 | 2.212817 | 0.0 |
Minghui 63 | MH63RS3 | HZAU | OsMH63_09G0132700 | RBH | 0.062336 | 0.17557 | 0 |
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_09g0004930 | RBH | 0.0 | 0.0 | 0.0 |
Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_09G0129500 | SBH | 0.7123875 | 0.441969 | 0.87729 |
LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_09g0004910 | RBH | 0.0 | 0.0 | None |
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_09g0004780 | RBH | 0.0 | 0.0 | None |
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_09g0004850 | RBH | 0.0 | 0.0 | None |
LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_09g0004650 | RBH | 0.0 | 0.0 | 0.0 |
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_09g0004710 | RBH | 0.0 | 0.0 | None |
N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_09G005010 | RBH | 0.0 | 0.0 | 0.0 |
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_09g0004850 | RBH | 0.0 | 0.0 | 0.0 |