Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_08g0023460 | OGI:08078130 | 14/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr08:28210599-28217773 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | tagcatcaacataatccattaaaatgcattaagtataacagaaccccccaaaaagtatcaagcaaacaacgtttattcatatacatgtatggtggtgaatggctagtagttcttgtgagctactgctactaaccggtggagagattctccataggaaaatgccttatcaagagaaaaaaaaaaagtagtttacactgccatctatttggatatcagagtgccacgtcacctggagaatggagatgacctctcatatttctgaacagaagcatgtatacatgcaaacgtgtctataagggtttctagttctacaacctttcatctatgagaaatataggttctataaacacaaagaccttggttttaagggtggaacatcactattctatgttctgaatatatcttgtgcttgtgtctgtcaaggcacctgggagaactggtcttgttatcatccacagcttgggacacagtgcaccttgctctcttttcacaatcttctgcacctaccagccatgcacaatttgtatgccccttcagtctaaaagttcaatccatctgaattctgaacccttgcaccatcaatcaagctcgaatcgtccatgctgaagtcttggtagtcaagcagccagtctgttgtgcttccatcccatgctgactgcttaacgatgccactgaagtcatcttcattgctgctagtaaaatttagccatggctcgtcagctggaagctctgcctccaacagccagttcaccaatgggtccaggccatgactgctggtgttcctgcttgactgctccatcgagtctgtgggcactgacatgtccctgctgcagcctccctcgggatcgaacggatatgccatgccattcgacttggctgattcggttgtggcagtggacagcgtggaggttcttgtttggctaaccaccttggtgttgggcagaggctgatgtgtggctgggtcgatgcccatcttgatgagcttcttcttgatgtgcgtgttccaatggttcttgatctcgttgtctgttctccctggtaatttggcggcgatcttggaccatctgtgtacggatacaaggtatcaagaatcaagagtaatgaaaatggtaatgttattccagtaaaaaaatatggtaatgttatcttctttgtgcaaggaaccgaaagggtgaaaaagacaagccattcgaccaatttcaagtattttcccagtttgctaatgatagcagtgtattcgatatcatgtttcaacattttttgcactaagctaggttgattacgacatgattggtgctatcacttttactttgtagcctttgaattgttctatttctttctctctctggttcatctacataacatatggaggttacatcaacataacatttgtcggtttagagggcaataacaaaacaagcattactattccattattcttttgagtcacattagcatcattgtaatgaccaaaggcacggaacaataaatcaacaacagaggttacagagaagaagataataaaaggaacaagaatcactcattcaggacctagtgaaataatgacatgcaaaacccacgggttaattaactgtcaaaaatgtcgaacgctgatacagttgcacttagacagctaacagtaagtttttagaagatatgaggtcctattatcagcaatttcctttccagatagattattctaagcagttccaacaaaaatgttaaccaagggtagcttactctcagtatataaggacttgtttcattctaaacaaagtactaatagtttttagataagcttgtagtgattaatagtcatggaggcagactggaggtttgagatttgacaaggataccgtgtgcatatgactttgacgctcttggttaaattcagctggttgagtattgggcacatatagtcatttgctaattagttgtatacaaaaataatctcaattattttgttgggacgccaatactgatattagatagcaatctgtcatactatctatgctcctttactttcagctttagaaattgatatgatctgtagcacacaccttcgaccatcattttttctcaataaagatttcaagtataattatacgaagaagttacatgaaaaattaaaaatctagtaatctcattttgaaataacaaatccaaacagtttgatgcatattagtggtcaaagctttatgagtttgatccataaaagaaacagagggagtgatgtatcactatgcatcttgtaataattaataaatgcatgcatgcatacatcatgttttttgttcatatacatagtaaacatactacaagttaagtgctcatacgatctttagaaacacaaatgcactgcttctaaagcataccaagagattgatatgtaactacacactgctacatacacgatgcacacactaactgcatgcaatttggtttttgagaagcatggtggcaccactgctcattaacatgaagttttgctttacctatattccgtttttcctggatgcttctaaacttaatcaaaaggaattcactcatgggtaaagcagtaccaagagattgatatgtaactacacactgctacatacacgatgcacacactaactgcatgcaatttggtttttgagaagcatggtggcaccactgctcattaacatgaagttttgctttacctatattccgtttttcctggatgcttctaaacttaatcaaaaggaattcactcatgggttcatgcccaggaatgcatgcagatagcattttctagcatagcaggaggcagatggatcaacatatgagatgccctatatgcaagcttataagcgtgctacaatatatcatatcatatcatgagatatccatgcaagtaggcgtacctgttaccaagcttggcatggaggtccacaacaagctgctcctcgtctgcggtgaggaggccacgcttgaggtcagggcggagatagttggtccaccgcaaccggcagctcttgccacagcgcagcagccctgccaacttaggcactgctcgccagcagcagcggccatgtgtcaggatgaaactgatgagcttcttgtcctcctctgccgtccatggccccctcttcaccttcttcttgtcacagcacggctgcctccccatttgctagttactgcagacttgcaccagatagatggaatcctgtataaaatgaacacttataaatttctagtgcttgcacatgtccagtgagctgcaaaactcctgtgcacaagcgtcagatgaaagggtggtgacagctctgttgcaactgcaattggtgtctgtgcttgcatatttataggtcagctcctcacttcctcagtttctcgaaaaaaatgtgtctttcatgaattttgtgtggtggtgatgatgatttggcttaatttagtgtgcttagaaagcaaggcctcaatccgtgctacagtagacttgcacccaaaaatccacatatatgcattgctgcaacgtggtgcatctacagtttagttgttgatcgaatttacaaattaagtataaaaaatatgtactattttattagcacaacagcaatttggtcgcacatgatgctacaggaaactcagatgtgattttctctggaatgaagttgcattttaactagtatttttaaagcttttgctgctttcatttcccacaaggctacacatttatgctgcctttgctacccacctatgtagccatttcgtcatcagctgtgaactatagctaactgctaaccaaagtaccaaaccatttgaggagcccccctaacttcatgtgattgctgtgagctgtaactcatcgtatggaccagaataatgactttgagcacatggtggtgtatattttgctacagtaatatgtagaaaaataatcacgatcagtgactccagtggtgaaaattgtcatacaagatacaggcaatttaggatgtcatagcactgaatttcatgacatcagctttcagtaggcaagaactcaaccaagtgatttcttctggcatacatgtacaggtgcaaattgtttttctagggcttgttcggttaataccgaagaggaagggattggaggggattaattccacacctcaataggtgtggaacaaatcccctctaattccccttcaatccccttctaagagggattaactgagcaaagccttaaggaaccaatgctaagtctgttggggaaaaaaattacaagtatacctggggctgggacatactttgtcaatagcaacactgaagatggaaagagtcacaaacataaaaatatcaaccatgtcatatatcagcttcctcgaatatgcaattactcatttactttacgatcaaccagaaaaggctagcctccaatagctctgccgatatctaggcattaaagcatatcaggaaaaacagtaactaattgatttgagttgagaaaacagtgcccaccatcagtaactttcaagtaccctgttccatcaaacaactgattcaatgtgcaagataactgattattttgtagcaggatacaaaatggaaaactagtgaactatgaactgtatgatctaggcatctaaccacactcttcagatccaactcaccacaggaacgggaaaagaaatggataattgtaccttcacccagaaatgacagcaagggatagcttattatctgtgggcacacaacagaatctgccgacatgaagaagaaaatgaccttgtgctgtaacaagataacaatgtcaacttggtgatacatactttggagtattgatgtaagaaggggacattcaatcaatcaatcagcaagcttgtaaccaagctatctattagtagatgtaagatttacatgtgtacttagaatgttgaaaccaagctcattgtgtattttctggaagtcatactccagatttcaagaagtgatatataaaactacaaaaagtgagaacaaactcttgagaaaacatatgcttaggaaacaaacactctgtaaggaatgcatctgttgtatatttacacccagtgctgttgcatgtttctgagatgaaacagtaaataaacgtagcttttagaagaaggaaactcccatcatcatgggggtaattttctttctagtcggttggtctattccatcctgccttccactatctgtagtctgtactagttagaaccaatggactgcatttctagatgagaagatttagctgacatcatccagttggtattatcatgcaaaattggtcctgaaaaaaactaaacaggagggattatctgggaatagtaacttcaacatttttctcttgtttttccccctcttatgtgagaggggtagttgattattcagtgcccaacttcaagcaagcttgtacagtaggacttagtgggaggtctgtgtgtcctttcagtataacttctggctgcttccctgaagctctgactataccttgacaggataggaagatattactaaaagaacaagtgacattatctatatatgaggtcatttaataataaaaacccttcaaaattacatgtgcatgtaagtgagactaccaatatttaggctcctcagtcctcaccaacccatctgagttacagctttcaagtaaaagacctgacactttcaagtccgtaccatgattctccaatggttgagctagtcaatgttatagataagatcacatagaagtaaccactgagctaccatctcgtgtttgtgcagtaaccactaaccaacaggctcatgattccattaaaatgcaaggttttagacagattacatggatttggtatacattcgatggatatggttagttgattactgctcatgtaacggaggtggctagcttttaaaatgcatgaaaaagagaatgggtctagtatttccatcactacatcagctaaatgcactgaataacaacctggattaccaaccttccagctaagaaaacgcgtaatcgatgccgcttaacattaaaggtactcttgattagagagtaatttatatatttaggttttgaatattgatcttcatggccactttgcgttttgaactaaggtaccctcagtaaggtatccctcttgctttatttagcaattagcacaatgactttctgaaaaggttgaaagaaatgactgggcttaaaggaaaatgttgtgcctgcctcttcagacaaaaatataattaaaaaatgctaggaaatgtagcttgtctacctacaaaatcatccaagattgatcactctatctgacagataatgagagcatggaattagttctagcaggctgtaccaacggcatatgcatgacaaattggcaatgctaatagtaagctaacaattagaactggaatgctcctcttgttcattcattggcatcgttcccgagtacgacccaacgcagcatggagatcttgtgtgcattcctcgattcagtctcaagctatattgttgccgatgctgaattacatgagcacacggaagtattggtcttccaagatatcatcataagacaaaagtaccagaagaagggactagactgtacagaacctacaccctcatgggtccttgctgcaaccaaactctacgacttcgcgtatctgttcatgtcattgcagaggactactactgaaggttgcaaggtgtttcacatattgtcattcacatataacaacacttcactaaaaactagtgtgagaggagacacatgcctctaaatttggcctacatcaaagttgttcttccacccccaaaatcaacatgcatcgatcggttcatctcatggggggacaagacaagggcgacgcattcagatattgcgaccatgtgtgtcagtaagacaagcaagtatacccaccaagatcgcggcaagatcggaaagctagggcacggatcgcagcgaggagatgtgtacaggagactagaaagcgaagcgagcaaaagtgcagtggaatctttggttggtaatggacggaacgggcgcacactgaccgagcggaggcgcggacttcgccgaggtggcggtgacggcgacctcgcaccctttcccttcccccaccaccggaggaggaaggggagggcgccgtcggaggggagggcgtacggcccgcgcttggaaggggacgccattgacgagggcgcaacacaacagtgcgttggatgg
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| CDS seq | atggggaggcagccgtgctgtgacaagaagaaggtgaagagggggccatggacggcagaggaggacaagaagctcatcagtttcatcctgacacatggccgctgctgctggcgagcagtgcctaagttggcagggctgctgcgctgtggcaagagctgccggttgcggtggaccaactatctccgccctgacctcaagcgtggcctcctcaccgcagacgaggagcagcttgttgtggacctccatgccaagcttggtaacagatggtccaagatcgccgccaaattaccagggagaacagacaacgagatcaagaaccattggaacacgcacatcaagaagaagctcatcaagatgggcatcgacccagccacacatcagcctctgcccaacaccaaggtggttagccaaacaagaacctccacgctgtccactgccacaaccgaatcagccaagtcgaatggcatggcatatccgttcgatcccgagggaggctgcagcagggacatgtcagtgcccacagactcgatggagcagtcaagcaggaacaccagcagtcatggcctggacccattggtgaactggctgttggaggcagagcttccagctgacgagccatggctaaattttactagcagcaatgaagatgacttcagtggcatcgttaagcagtcagcatgggatggaagcacaacagactggctgcttgactaccaagacttcagcatggacgattcgagcttgattgatggtgcaagggttcagaattcagatggattgaacttttag
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| Protein seq | MGRQPCCDKKKVKRGPWTAEEDKKLISFILTHGRCCWRAVPKLAGLLRCGKSCRLRWTNYLRPDLKRGLLTADEEQLVVDLHAKLGNRWSKIAAKLPGRTDNEIKNHWNTHIKKKLIKMGIDPATHQPLPNTKVVSQTRTSTLSTATTESAKSNGMAYPFDPEGGCSRDMSVPTDSMEQSSRNTSSHGLDPLVNWLLEAELPADEPWLNFTSSNEDDFSGIVKQSAWDGSTTDWLLDYQDFSMDDSSLIDGARVQNSDGLNF |
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| Function | Protein ODORANT1 [UniProtKB/Swiss-Prot:Q50EX6] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_08g0023460 | OsLima_08g0023460.02 | Chr08 | 28210599 | 28217694 | - | NAM | ||
| CDS seq | atggggaggcagccgtgctgtgacaagaagaaggtgaagagggggccatggacggcagaggaggacaagaagctcatcagtttcatcctgacacatggccgctgctgctggcgagcagtgcctaagttggcagggctgctgcgctgtggcaagagctgccggttgcggtggaccaactatctccgccctgacctcaagcgtggcctcctcaccgcagacgaggagcagcttgttgtggacctccatgccaagcttggtaacagatggtccaagatcgccgccaaattaccagggagaacagacaacgagatcaagaaccattggaacacgcacatcaagaagaagctcatcaagatgggcatcgacccagccacacatcagcctctgcccaacaccaaggtggttagccaaacaagaacctccacgctgtccactgccacaaccgaatcagccaagtcgaatggcatggcatatccgttcgatcccgagggaggctgcagcagggacatgtcagtgcccacagactcgatggagcagtcaagcaggaacaccagcagtcatggcctggacccattggtgaactggctgttggaggcagagcttccagctgacgagccatggctaaattttactagcagcaatgaagatgacttcagtggcatcgttaagcagtcagcatgggatggaagcacaacagactggctgcttgactaccaagacttcagcatggacgattcgagcttgattgatggtgcaagggttcagaattcagatggattgaacttttag
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| Protein seq | MGRQPCCDKKKVKRGPWTAEEDKKLISFILTHGRCCWRAVPKLAGLLRCGKSCRLRWTNYLRPDLKRGLLTADEEQLVVDLHAKLGNRWSKIAAKLPGRTDNEIKNHWNTHIKKKLIKMGIDPATHQPLPNTKVVSQTRTSTLSTATTESAKSNGMAYPFDPEGGCSRDMSVPTDSMEQSSRNTSSHGLDPLVNWLLEAELPADEPWLNFTSSNEDDFSGIVKQSAWDGSTTDWLLDYQDFSMDDSSLIDGARVQNSDGLNF
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_08g0023460 | OsLima_08g0023460.01 | Chr08 | 28210599 | 28217773 | - | NAM | ||
| CDS seq | atggggaggcagccgtgctgtgacaagaagaaggtgaagagggggccatggacggcagaggaggacaagaagctcatcagtttcatcctgacacatggccgctgctgctggcgagcagtgcctaagttggcagggctgctgcgctgtggcaagagctgccggttgcggtggaccaactatctccgccctgacctcaagcgtggcctcctcaccgcagacgaggagcagcttgttgtggacctccatgccaagcttggtaacagatggtccaagatcgccgccaaattaccagggagaacagacaacgagatcaagaaccattggaacacgcacatcaagaagaagctcatcaagatgggcatcgacccagccacacatcagcctctgcccaacaccaaggtggttagccaaacaagaacctccacgctgtccactgccacaaccgaatcagccaagtcgaatggcatggcatatccgttcgatcccgagggaggctgcagcagggacatgtcagtgcccacagactcgatggagcagtcaagcaggaacaccagcagtcatggcctggacccattggtgaactggctgttggaggcagagcttccagctgacgagccatggctaaattttactagcagcaatgaagatgacttcagtggcatcgttaagcagtcagcatgggatggaagcacaacagactggctgcttgactaccaagacttcagcatggacgattcgagcttgattgatggtgcaagggttcagaattcagatggattgaacttttag
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| Protein seq | MGRQPCCDKKKVKRGPWTAEEDKKLISFILTHGRCCWRAVPKLAGLLRCGKSCRLRWTNYLRPDLKRGLLTADEEQLVVDLHAKLGNRWSKIAAKLPGRTDNEIKNHWNTHIKKKLIKMGIDPATHQPLPNTKVVSQTRTSTLSTATTESAKSNGMAYPFDPEGGCSRDMSVPTDSMEQSSRNTSSHGLDPLVNWLLEAELPADEPWLNFTSSNEDDFSGIVKQSAWDGSTTDWLLDYQDFSMDDSSLIDGARVQNSDGLNF
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A5 | Chr08 | 28215335 | 28217602 | - | OsLima_08g0023460.02 | OsLima_08g0023460.02,OsLima_08g0023460.01 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.216851 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_08g0548000 | RBH | 0.0 | 0.0 | 0.341893 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g43450 | RBH | 0.0 | 0.0 | 0.128112 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os08g0548000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0024500 | RBH | 0.0 | 10.780577 | 0.755009 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0024280 | RBH | 0.0 | 0.633763 | 0.569717 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0024280 | RBH | 0.0 | 5.308245 | 1.178402 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0024610 | RBH | 0.0 | 0.227989 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0024250 | RBH | 0.482869 | 0.000000 | 6.137151 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0329000 | SBH | 1.4769045 | 0.148857 | 0.575356 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0024090 | RBH | 0.0 | 0.337380 | 0.376238 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0350700 | SBH | 1.4665425 | 0.233385 | 0.280128 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_09g0017670 | RBH | 0.084233 | 0.417929 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0023820 | RBH | 0.200716 | 3.596476 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0023640 | RBH | 0.0 | 7.516965 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0024520 | RBH | 0.0 | 0.395101 | 0.959206 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0023740 | RBH | 0.0 | 1.641618 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G023960 | RBH | 0.0 | 1.281798 | 1.209692 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0024120 | RBH | 0.0 | 0.000000 | 0.932876 |
